Wall clock time and date at job start Tue Mar 31 2020 14:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46846 * 2 1 4 4 H 1.08999 * 109.47118 * 304.99763 * 3 2 1 5 5 C 1.53003 * 109.47064 * 65.00078 * 3 2 1 6 6 C 1.53004 * 109.47025 * 184.99627 * 3 2 1 7 7 C 1.52990 * 109.47242 * 174.99976 * 6 3 2 8 8 H 1.09003 * 109.47324 * 55.00241 * 7 6 3 9 9 C 1.53006 * 109.47396 * 175.00304 * 7 6 3 10 10 O 1.42895 * 109.46905 * 54.99974 * 9 7 6 11 11 N 1.46499 * 109.47423 * 295.00509 * 7 6 3 12 12 C 1.34778 * 120.00315 * 154.99920 * 11 7 6 13 13 O 1.21277 * 120.00178 * 359.97438 * 12 11 7 14 14 C 1.50699 * 120.00119 * 179.97438 * 12 11 7 15 15 C 1.50694 * 109.47196 * 180.02562 * 14 12 11 16 16 C 1.37640 * 120.12672 * 265.00221 * 15 14 12 17 17 C 1.38615 * 120.24944 * 179.97438 * 16 15 14 18 18 C 1.38666 * 120.49954 * 0.02562 * 17 16 15 19 19 C 1.37593 * 120.24622 * 0.02562 * 18 17 16 20 20 C 1.40698 * 120.12917 * 84.72952 * 15 14 12 21 21 C 1.41395 * 120.24178 * 359.97438 * 20 15 14 22 22 H 1.07998 * 119.99908 * 329.70096 * 21 20 15 23 23 C 1.39946 * 119.99955 * 149.70378 * 21 20 15 24 24 N 1.30822 * 119.99820 * 162.01275 * 23 21 20 25 25 Si 1.86799 * 120.00054 * 342.01171 * 23 21 20 26 26 H 1.48508 * 109.46862 * 95.40217 * 25 23 21 27 27 H 1.48496 * 109.47329 * 215.40187 * 25 23 21 28 28 H 1.48498 * 109.47111 * 335.40605 * 25 23 21 29 29 H 1.08994 * 109.46917 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47372 * 300.00115 * 1 2 3 31 31 H 1.09004 * 109.46684 * 60.00180 * 1 2 3 32 32 H 1.09000 * 109.46853 * 239.99841 * 2 1 3 33 33 H 1.08995 * 109.46855 * 119.99726 * 2 1 3 34 34 H 1.09005 * 109.46864 * 179.97438 * 5 3 2 35 35 H 1.08997 * 109.47142 * 299.99381 * 5 3 2 36 36 H 1.08999 * 109.47411 * 59.99864 * 5 3 2 37 37 H 1.09003 * 109.46607 * 55.00402 * 6 3 2 38 38 H 1.08993 * 109.47096 * 295.00545 * 6 3 2 39 39 H 1.08999 * 109.46810 * 295.00239 * 9 7 6 40 40 H 1.09001 * 109.47366 * 175.00207 * 9 7 6 41 41 H 0.96701 * 114.00081 * 180.02562 * 10 9 7 42 42 H 0.97000 * 120.00168 * 334.99384 * 11 7 6 43 43 H 1.08999 * 109.47553 * 300.00247 * 14 12 11 44 44 H 1.09009 * 109.46943 * 60.00168 * 14 12 11 45 45 H 1.07999 * 119.87870 * 359.97438 * 16 15 14 46 46 H 1.07996 * 119.75046 * 179.97438 * 17 16 15 47 47 H 1.07999 * 119.87341 * 180.02562 * 18 17 16 48 48 H 1.08003 * 120.12512 * 179.97438 * 19 18 17 49 49 H 0.97004 * 119.99724 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5649 1.4444 -0.1256 7 6 4.0645 2.8850 -0.2510 8 1 3.6971 3.4716 0.5910 9 6 5.5945 2.8960 -0.2513 10 8 6.0768 2.0338 -1.2837 11 7 3.5717 3.4656 -1.5025 12 6 3.4334 4.8013 -1.6173 13 8 3.7164 5.5227 -0.6843 14 6 2.9271 5.3986 -2.9049 15 6 2.8661 6.8986 -2.7730 16 6 1.6893 7.5128 -2.4093 17 6 1.6306 8.8923 -2.2868 18 6 2.7535 9.6689 -2.5290 19 6 3.9402 9.0763 -2.8949 20 6 4.0134 7.6760 -3.0157 21 6 5.2294 7.0555 -3.3839 22 1 5.4564 6.0604 -3.0308 23 6 6.1388 7.7308 -4.2057 24 7 7.3845 7.3358 -4.2656 25 14 5.5739 9.1961 -5.2173 26 1 5.8671 10.4503 -4.4782 27 1 6.2930 9.2075 -6.5165 28 1 4.1126 9.0953 -5.4612 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.9989 3.1541 1.3075 35 1 0.5489 2.1253 1.3969 36 1 2.0698 1.5875 2.1492 37 1 3.8571 0.8801 -1.0113 38 1 4.0029 0.9836 0.7597 39 1 5.9605 2.5468 0.7142 40 1 5.9505 3.9107 -0.4295 41 1 7.0411 1.9913 -1.3422 42 1 3.3451 2.8887 -2.2487 43 1 3.6017 5.1329 -3.7187 44 1 1.9306 5.0114 -3.1178 45 1 0.8084 6.9179 -2.2186 46 1 0.7029 9.3659 -2.0013 47 1 2.6965 10.7428 -2.4302 48 1 4.8136 9.6830 -3.0835 49 1 8.0148 7.8036 -4.8356 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844038294.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:50 Heat of formation + Delta-G solvation = -119.799908 kcal Electronic energy + Delta-G solvation = -27661.558463 eV Core-core repulsion = 23972.132350 eV Total energy + Delta-G solvation = -3689.426112 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.04637 -39.62471 -38.50434 -37.32256 -35.47580 -35.21568 -33.58129 -32.18738 -31.91224 -29.96390 -28.38470 -27.48091 -26.65536 -24.68606 -23.24727 -22.60757 -21.54191 -20.97810 -20.67973 -19.24040 -18.52644 -17.79851 -17.50869 -17.02128 -16.50082 -16.15525 -16.01815 -15.87180 -15.57664 -15.36447 -15.04159 -14.59691 -14.51360 -14.44851 -14.16984 -13.84835 -13.73172 -13.60779 -13.22642 -13.09050 -12.90947 -12.75962 -12.67590 -12.58795 -12.48449 -12.38566 -12.00100 -11.98678 -11.52825 -11.48167 -11.36310 -11.32028 -11.28364 -10.97468 -10.96485 -10.67248 -9.92420 -9.38855 -9.27216 -8.85733 -6.43443 0.81052 0.91506 1.26791 1.39792 1.49065 1.86526 2.14115 2.39519 2.66691 3.38826 3.55383 3.64140 3.95318 4.01828 4.10616 4.22436 4.29924 4.31948 4.39447 4.41976 4.46467 4.49952 4.59671 4.63427 4.66421 4.73990 4.77383 4.80900 4.89612 4.94867 4.98234 5.01707 5.12818 5.17625 5.18645 5.26291 5.27466 5.35063 5.38776 5.54140 5.60100 5.68770 5.69536 5.88067 5.96880 6.06806 6.31021 6.47190 6.71561 6.79111 6.82809 6.92443 7.48074 8.22342 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015027 B = 0.003785 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.869334 B = 7395.723636 C = 8624.624503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C -0.090 4.090 4 H 0.064 0.936 5 C -0.150 4.150 6 C -0.101 4.101 7 C 0.146 3.854 8 H 0.084 0.916 9 C 0.066 3.934 10 O -0.574 6.574 11 N -0.710 5.710 12 C 0.518 3.482 13 O -0.577 6.577 14 C -0.076 4.076 15 C -0.169 4.169 16 C -0.079 4.079 17 C -0.229 4.229 18 C -0.092 4.092 19 C -0.258 4.258 20 C 0.084 3.916 21 C -0.469 4.469 22 H 0.055 0.945 23 C 0.048 3.952 24 N -0.852 5.852 25 Si 0.963 3.037 26 H -0.268 1.268 27 H -0.278 1.278 28 H -0.251 1.251 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.035 0.965 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.010 0.990 41 H 0.391 0.609 42 H 0.409 0.591 43 H 0.090 0.910 44 H 0.118 0.882 45 H 0.126 0.874 46 H 0.128 0.872 47 H 0.121 0.879 48 H 0.090 0.910 49 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.700 -14.077 5.504 17.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.109 4.109 4 H 0.082 0.918 5 C -0.207 4.207 6 C -0.139 4.139 7 C 0.042 3.958 8 H 0.102 0.898 9 C -0.013 4.013 10 O -0.382 6.382 11 N -0.363 5.363 12 C 0.306 3.694 13 O -0.456 6.456 14 C -0.115 4.115 15 C -0.171 4.171 16 C -0.097 4.097 17 C -0.248 4.248 18 C -0.110 4.110 19 C -0.277 4.277 20 C 0.082 3.918 21 C -0.499 4.499 22 H 0.073 0.927 23 C -0.165 4.165 24 N -0.479 5.479 25 Si 0.787 3.213 26 H -0.194 1.194 27 H -0.205 1.205 28 H -0.174 1.174 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.029 0.971 41 H 0.240 0.760 42 H 0.245 0.755 43 H 0.108 0.892 44 H 0.136 0.864 45 H 0.144 0.856 46 H 0.146 0.854 47 H 0.139 0.861 48 H 0.108 0.892 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.852 -13.700 6.000 17.909 hybrid contribution 1.277 0.756 -0.536 1.578 sum -8.575 -12.944 5.464 16.460 Atomic orbital electron populations 1.21824 0.95680 1.01832 1.01791 1.21525 0.96060 0.95179 1.02361 1.21160 0.94529 0.96930 0.98274 0.91777 1.21918 1.01612 0.99624 0.97516 1.21722 0.95523 0.92943 1.03731 1.21146 0.91020 0.96138 0.87532 0.89835 1.22567 0.95580 0.92028 0.91167 1.86366 1.28011 1.67447 1.56327 1.45880 1.67323 1.06153 1.16945 1.21041 0.76404 0.82206 0.89716 1.90645 1.51324 1.61320 1.42284 1.20336 1.03278 0.92838 0.95056 1.19548 0.93429 0.93948 1.10188 1.20886 0.96689 0.94992 0.97145 1.20869 0.98569 0.93831 1.11546 1.20971 0.92921 0.99310 0.97820 1.21144 0.98247 0.95134 1.13163 1.17714 0.92363 0.91869 0.89897 1.19311 1.00131 1.02556 1.27854 0.92672 1.26762 0.93524 0.99536 0.96723 1.69741 1.03973 1.40585 1.33614 0.85531 0.80370 0.78176 0.77233 1.19413 1.20454 1.17444 0.92152 0.92612 0.93113 0.91673 0.91471 0.94573 0.92050 0.91822 0.90402 0.89555 0.90891 0.97135 0.75998 0.75486 0.89166 0.86383 0.85639 0.85397 0.86099 0.89217 0.89945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.67 71.98 0.70 -1.40 16 2 C -0.11 -1.63 5.40 30.60 0.17 -1.46 16 3 C -0.09 -1.61 2.33 -10.79 -0.03 -1.64 16 4 H 0.06 1.27 7.62 -2.39 -0.02 1.26 16 5 C -0.15 -2.82 8.71 71.98 0.63 -2.20 16 6 C -0.10 -1.97 3.94 30.59 0.12 -1.85 16 7 C 0.15 3.99 2.23 44.99 0.10 4.10 16 8 H 0.08 2.57 5.78 -2.39 -0.01 2.55 16 9 C 0.07 1.89 6.85 71.98 0.49 2.38 16 10 O -0.57 -15.17 12.83 -148.98 -1.91 -17.08 16 11 N -0.71 -21.55 4.39 -442.54 -1.94 -23.50 16 12 C 0.52 20.62 7.39 87.66 0.65 21.27 16 13 O -0.58 -28.46 15.70 -3.02 -0.05 -28.51 16 14 C -0.08 -2.92 5.19 29.10 0.15 -2.77 16 15 C -0.17 -7.84 4.43 -19.41 -0.09 -7.93 16 16 C -0.08 -3.25 9.66 22.22 0.21 -3.04 16 17 C -0.23 -9.25 10.05 22.46 0.23 -9.03 16 18 C -0.09 -4.04 10.02 22.22 0.22 -3.81 16 19 C -0.26 -13.07 7.17 22.73 0.16 -12.91 16 20 C 0.08 4.46 5.10 -21.29 -0.11 4.35 16 21 C -0.47 -26.86 8.55 23.46 0.20 -26.66 16 22 H 0.06 3.42 6.99 -2.91 -0.02 3.40 16 23 C 0.05 2.67 5.41 85.26 0.46 3.13 16 24 N -0.85 -48.01 13.93 21.83 0.30 -47.71 16 25 Si 0.96 44.56 24.52 68.60 1.68 46.25 16 26 H -0.27 -12.09 6.71 99.48 0.67 -11.42 16 27 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 28 H -0.25 -11.74 6.85 99.48 0.68 -11.06 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.05 0.76 6.57 -2.39 -0.02 0.75 16 31 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.04 0.85 6.46 -2.38 -0.02 0.84 16 35 H 0.06 1.07 6.56 -2.39 -0.02 1.05 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.08 1.54 7.73 -2.39 -0.02 1.52 16 38 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.39 7.69 9.12 -74.06 -0.68 7.01 16 42 H 0.41 10.34 8.60 -92.71 -0.80 9.54 16 43 H 0.09 3.66 7.15 -2.39 -0.02 3.64 16 44 H 0.12 3.48 8.05 -2.38 -0.02 3.46 16 45 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 46 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 47 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 48 H 0.09 4.59 4.74 -2.91 -0.01 4.58 16 49 H 0.29 14.77 8.30 -92.71 -0.77 14.00 16 Total: -1.00 -71.42 387.12 1.77 -69.65 By element: Atomic # 1 Polarization: 40.95 SS G_CDS: -0.58 Total: 40.37 kcal Atomic # 6 Polarization: -43.74 SS G_CDS: 4.27 Total: -39.47 kcal Atomic # 7 Polarization: -69.57 SS G_CDS: -1.64 Total: -71.21 kcal Atomic # 8 Polarization: -43.62 SS G_CDS: -1.96 Total: -45.58 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.68 Total: 46.25 kcal Total: -71.42 1.77 -69.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844038294.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.154 kcal (2) G-P(sol) polarization free energy of solvation -71.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds