Wall clock time and date at job start Tue Mar 31 2020 14:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47340 * 2 1 4 4 H 1.09002 * 109.50402 * 305.35410 * 3 2 1 5 5 C 1.53100 * 109.50909 * 65.48097 * 3 2 1 6 6 O 1.43007 * 109.26239 * 176.78456 * 5 3 2 7 7 C 1.43020 * 113.73939 * 301.33389 * 6 5 3 8 8 C 1.52997 * 109.50606 * 178.60455 * 7 6 5 9 9 C 1.52999 * 109.50088 * 298.68918 * 7 6 5 10 10 C 1.53094 * 109.25735 * 58.66621 * 7 6 5 11 11 N 1.47009 * 109.26114 * 303.15257 * 10 7 6 12 12 C 1.46899 * 111.00462 * 182.39441 * 11 10 7 13 13 C 1.50698 * 109.46924 * 52.20160 * 12 11 10 14 14 C 1.38308 * 119.92869 * 269.72707 * 13 12 11 15 15 C 1.38106 * 120.06635 * 179.72544 * 14 13 12 16 16 C 1.38886 * 119.92728 * 0.52786 * 15 14 13 17 17 O 1.35755 * 120.06543 * 179.72851 * 16 15 14 18 18 C 1.34824 * 116.99616 * 185.33798 * 17 16 15 19 19 H 1.07999 * 120.00568 * 4.82307 * 18 17 16 20 20 C 1.38658 * 119.99928 * 184.82229 * 18 17 16 21 21 N 1.31559 * 119.99486 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00307 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46477 * 60.00357 * 22 20 18 24 24 H 1.48495 * 109.47148 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47213 * 300.00359 * 22 20 18 26 26 C 1.38878 * 119.86514 * 359.74801 * 16 15 14 27 27 C 1.38102 * 119.92699 * 0.02562 * 26 16 15 28 28 H 1.09000 * 109.47126 * 182.53583 * 1 2 3 29 29 H 1.09004 * 109.46883 * 302.52726 * 1 2 3 30 30 H 1.08997 * 109.47265 * 62.53043 * 1 2 3 31 31 H 1.09001 * 109.46866 * 240.00039 * 2 1 3 32 32 H 1.09006 * 109.47339 * 120.00127 * 2 1 3 33 33 H 1.09007 * 109.50347 * 296.72450 * 5 3 2 34 34 H 1.09005 * 109.50340 * 56.84348 * 5 3 2 35 35 H 1.08995 * 109.47465 * 60.00085 * 8 7 6 36 36 H 1.09003 * 109.46878 * 180.02562 * 8 7 6 37 37 H 1.09000 * 109.47055 * 299.99446 * 8 7 6 38 38 H 1.08998 * 109.47285 * 60.00144 * 9 7 6 39 39 H 1.09008 * 109.46827 * 179.97438 * 9 7 6 40 40 H 1.08993 * 109.47320 * 299.99912 * 9 7 6 41 41 H 1.09002 * 109.50410 * 183.21773 * 10 7 6 42 42 H 1.09002 * 109.50903 * 63.08987 * 10 7 6 43 43 H 1.09003 * 109.46979 * 292.20362 * 12 11 10 44 44 H 1.09000 * 109.47705 * 172.20644 * 12 11 10 45 45 H 1.07993 * 119.96931 * 359.97438 * 14 13 12 46 46 H 1.07998 * 120.03702 * 180.27627 * 15 14 13 47 47 H 0.97004 * 119.99735 * 180.02562 * 21 20 18 48 48 H 1.08000 * 120.03613 * 179.97438 * 26 16 15 49 49 H 1.08002 * 119.96166 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6008 1.9838 -0.8380 5 6 1.6458 2.1241 1.3130 6 8 2.1890 3.4468 1.3394 7 6 3.6135 3.4867 1.2184 8 6 4.0860 4.9419 1.2231 9 6 4.2471 2.7401 2.3940 10 6 4.0276 2.8189 -0.0955 11 7 3.5046 1.4454 -0.1272 12 6 3.9283 0.7487 -1.3491 13 6 5.4237 0.8602 -1.4980 14 6 5.9705 1.9214 -2.1965 15 6 7.3408 2.0294 -2.3298 16 6 8.1695 1.0651 -1.7711 17 8 9.5167 1.1656 -1.9052 18 6 10.2566 0.1408 -1.4359 19 1 9.7712 -0.7432 -1.0495 20 6 11.6407 0.2219 -1.4494 21 7 12.2319 1.2989 -1.9197 22 14 12.6659 -1.1976 -0.7986 23 1 12.3706 -2.4225 -1.5845 24 1 14.1077 -0.8652 -0.9241 25 1 12.3343 -1.4338 0.6295 26 6 7.6172 -0.0024 -1.0753 27 6 6.2463 -0.1022 -0.9414 28 1 -0.3633 -1.0267 0.0455 29 1 -0.3633 0.5526 0.8665 30 1 -0.3633 0.4740 -0.9118 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 0.5593 2.1753 1.3846 34 1 2.0400 1.5518 2.1528 35 1 3.7876 5.4179 2.1571 36 1 5.1717 4.9717 1.1303 37 1 3.6355 5.4729 0.3845 38 1 3.9113 1.7031 2.3892 39 1 5.3328 2.7705 2.3010 40 1 3.9488 3.2143 3.3289 41 1 5.1151 2.7961 -0.1652 42 1 3.6202 3.3829 -0.9346 43 1 3.4423 1.2023 -2.2130 44 1 3.6469 -0.3023 -1.2844 45 1 5.3253 2.6685 -2.6345 46 1 7.7674 2.8607 -2.8715 47 1 13.2002 1.3555 -1.9295 48 1 8.2590 -0.7541 -0.6400 49 1 5.8162 -0.9319 -0.4000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844387858.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:48 Heat of formation + Delta-G solvation = -49.133879 kcal Electronic energy + Delta-G solvation = -27820.835893 eV Core-core repulsion = 24134.474089 eV Total energy + Delta-G solvation = -3686.361803 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.41839 -39.00008 -37.11082 -36.01410 -34.34770 -32.54004 -32.19349 -30.26852 -29.90868 -27.87547 -27.10285 -26.68571 -25.36302 -24.20010 -22.88853 -21.96196 -20.96093 -20.25144 -19.26318 -17.99411 -16.97260 -16.67802 -16.18049 -15.38035 -15.27620 -14.73338 -14.60586 -14.51808 -14.18227 -13.98206 -13.84305 -13.52716 -13.45616 -13.31288 -12.87852 -12.71250 -12.70457 -12.45680 -12.18760 -12.01772 -11.87926 -11.75509 -11.62684 -11.35013 -11.28508 -11.22832 -11.11187 -10.80623 -10.77969 -10.69632 -10.44911 -10.42351 -10.21057 -9.47632 -9.37171 -8.84565 -8.26267 -8.17353 -7.18780 -6.47052 -4.05698 2.18662 2.26019 3.12183 3.12733 3.15875 3.68534 3.85758 3.95223 4.56177 4.63457 4.75310 4.81145 4.95511 4.98636 5.03922 5.09602 5.19469 5.22035 5.24756 5.32564 5.40530 5.46418 5.54417 5.57968 5.63993 5.67046 5.71773 5.75705 5.81427 5.83189 5.89107 5.91393 5.96542 5.98768 6.03418 6.11180 6.18619 6.20393 6.36923 6.41409 6.67482 6.88064 7.01078 7.04087 7.12178 7.21535 7.26761 7.39295 7.42609 7.80441 7.97911 8.98596 9.68505 10.70860 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.018156 B = 0.003042 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.804647 B = 9200.989280 C = 9750.840859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C 0.048 3.952 4 H 0.045 0.955 5 C 0.068 3.932 6 O -0.381 6.381 7 C 0.114 3.886 8 C -0.138 4.138 9 C -0.166 4.166 10 C 0.032 3.968 11 N -0.524 5.524 12 C 0.112 3.888 13 C -0.184 4.184 14 C -0.069 4.069 15 C -0.194 4.194 16 C 0.156 3.844 17 O -0.177 6.177 18 C -0.392 4.392 19 H 0.091 0.909 20 C 0.040 3.960 21 N -0.863 5.863 22 Si 0.940 3.060 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.235 4.235 27 C -0.048 4.048 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.053 0.947 41 H 0.100 0.900 42 H 0.035 0.965 43 H 0.030 0.970 44 H 0.078 0.922 45 H 0.106 0.894 46 H 0.115 0.885 47 H 0.271 0.729 48 H 0.126 0.874 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.038 0.358 5.421 20.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.061 4.061 4 H 0.063 0.937 5 C -0.009 4.009 6 O -0.300 6.300 7 C 0.074 3.926 8 C -0.196 4.196 9 C -0.224 4.224 10 C -0.096 4.096 11 N -0.249 5.249 12 C -0.015 4.015 13 C -0.186 4.186 14 C -0.087 4.087 15 C -0.213 4.213 16 C 0.102 3.898 17 O -0.080 6.080 18 C -0.468 4.468 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.497 5.497 22 Si 0.765 3.235 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.255 4.255 27 C -0.067 4.067 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.118 0.882 42 H 0.053 0.947 43 H 0.048 0.952 44 H 0.096 0.904 45 H 0.124 0.876 46 H 0.134 0.866 47 H 0.081 0.919 48 H 0.144 0.856 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -19.548 0.533 5.704 20.371 hybrid contribution 0.368 -0.579 -0.438 0.814 sum -19.180 -0.046 5.266 19.890 Atomic orbital electron populations 1.21816 0.95635 1.01801 1.01815 1.21574 0.95379 0.95462 1.03214 1.22344 0.88798 0.96734 0.98197 0.93723 1.22710 0.98226 0.83880 0.96102 1.87987 1.20811 1.27053 1.94165 1.21595 0.80626 0.95894 0.94457 1.21746 1.01522 0.93647 1.02657 1.22249 1.01604 1.01480 0.97047 1.22829 1.02450 0.88173 0.96101 1.62320 1.08301 1.15854 1.38405 1.20863 0.92557 0.98688 0.89343 1.19057 0.93507 0.98887 1.07104 1.20493 0.93756 0.96649 0.97837 1.20157 0.92310 1.01269 1.07556 1.19399 0.85196 0.92970 0.92225 1.83986 1.11595 1.42670 1.69768 1.21276 0.88064 0.95033 1.42436 0.89125 1.25288 0.95969 0.98338 0.96869 1.70030 1.10450 1.26973 1.42274 0.85790 0.78548 0.79798 0.79374 1.19483 1.20267 1.19463 1.21159 0.95144 1.01895 1.07257 1.20551 0.92645 0.97078 0.96447 0.92461 0.92556 0.92805 0.91235 0.91006 0.88929 0.92162 0.91779 0.90655 0.92097 0.91062 0.91420 0.92802 0.88210 0.94656 0.95157 0.90388 0.87634 0.86645 0.91944 0.85628 0.87520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.73 37.16 0.36 -0.76 16 2 C -0.12 -1.08 5.25 -26.73 -0.14 -1.22 16 3 C 0.05 0.53 2.05 -67.60 -0.14 0.39 16 4 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 5 C 0.07 0.73 5.58 37.21 0.21 0.93 16 6 O -0.38 -4.90 10.28 -35.23 -0.36 -5.26 16 7 C 0.11 1.42 1.11 -90.57 -0.10 1.32 16 8 C -0.14 -1.54 8.85 37.16 0.33 -1.21 16 9 C -0.17 -2.04 8.17 37.16 0.30 -1.74 16 10 C 0.03 0.44 3.56 -3.72 -0.01 0.42 16 11 N -0.52 -6.75 4.01 -227.78 -0.91 -7.66 16 12 C 0.11 1.51 4.71 -4.98 -0.02 1.49 16 13 C -0.18 -3.05 4.39 -104.58 -0.46 -3.50 16 14 C -0.07 -1.19 7.82 -39.60 -0.31 -1.50 16 15 C -0.19 -4.00 9.99 -39.39 -0.39 -4.40 16 16 C 0.16 3.71 6.65 -39.10 -0.26 3.45 16 17 O -0.18 -5.01 9.76 0.05 0.00 -5.01 16 18 C -0.39 -10.87 9.45 30.89 0.29 -10.57 16 19 H 0.09 2.32 5.27 -52.49 -0.28 2.05 16 20 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 21 N -0.86 -25.16 13.67 55.48 0.76 -24.40 16 22 Si 0.94 20.38 29.55 -169.99 -5.02 15.35 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 24 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 26 C -0.24 -5.02 9.14 -39.39 -0.36 -5.38 16 27 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.38 6.54 -51.93 -0.34 0.04 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.66 6.18 -51.93 -0.32 0.34 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 0.82 6.69 -51.93 -0.35 0.48 16 34 H 0.06 0.65 6.50 -51.93 -0.34 0.31 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.91 6.13 -51.93 -0.32 0.59 16 39 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.10 1.53 5.87 -51.93 -0.30 1.23 16 42 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.03 0.40 8.08 -51.93 -0.42 -0.02 16 44 H 0.08 0.98 6.33 -51.93 -0.33 0.65 16 45 H 0.11 1.59 8.05 -52.49 -0.42 1.17 16 46 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 47 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 48 H 0.13 2.71 5.70 -52.49 -0.30 2.41 16 49 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 377.42 15.07 5.69 5.69 Total: -1.00 -29.72 377.42 -8.96 -38.68 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -7.92 Total: 5.16 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: -1.18 Total: -22.55 kcal Atomic # 7 Polarization: -31.91 SS G_CDS: -0.15 Total: -32.06 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: -0.36 Total: -10.27 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.72 -8.96 -38.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844387858.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.453 kcal (2) G-P(sol) polarization free energy of solvation -29.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds