Wall clock time and date at job start Tue Mar 31 2020 14:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47340 * 2 1 4 4 H 1.09002 * 109.50402 * 305.35410 * 3 2 1 5 5 C 1.53100 * 109.50909 * 65.48097 * 3 2 1 6 6 O 1.43007 * 109.26239 * 176.78456 * 5 3 2 7 7 C 1.43020 * 113.73939 * 301.33389 * 6 5 3 8 8 C 1.52997 * 109.50606 * 178.60455 * 7 6 5 9 9 C 1.52999 * 109.50088 * 298.68918 * 7 6 5 10 10 C 1.53094 * 109.25735 * 58.66621 * 7 6 5 11 11 N 1.47009 * 109.26114 * 303.15257 * 10 7 6 12 12 C 1.46899 * 111.00462 * 182.39441 * 11 10 7 13 13 C 1.50698 * 109.46924 * 52.20160 * 12 11 10 14 14 C 1.38308 * 119.92869 * 269.72707 * 13 12 11 15 15 C 1.38106 * 120.06635 * 179.72544 * 14 13 12 16 16 C 1.38886 * 119.92728 * 0.52786 * 15 14 13 17 17 O 1.35755 * 120.06543 * 179.72851 * 16 15 14 18 18 C 1.34824 * 116.99616 * 185.33798 * 17 16 15 19 19 H 1.07999 * 120.00568 * 4.82307 * 18 17 16 20 20 C 1.38658 * 119.99928 * 184.82229 * 18 17 16 21 21 N 1.31559 * 119.99486 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00307 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46477 * 60.00357 * 22 20 18 24 24 H 1.48495 * 109.47148 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47213 * 300.00359 * 22 20 18 26 26 C 1.38878 * 119.86514 * 359.74801 * 16 15 14 27 27 C 1.38102 * 119.92699 * 0.02562 * 26 16 15 28 28 H 1.09000 * 109.47126 * 182.53583 * 1 2 3 29 29 H 1.09004 * 109.46883 * 302.52726 * 1 2 3 30 30 H 1.08997 * 109.47265 * 62.53043 * 1 2 3 31 31 H 1.09001 * 109.46866 * 240.00039 * 2 1 3 32 32 H 1.09006 * 109.47339 * 120.00127 * 2 1 3 33 33 H 1.09007 * 109.50347 * 296.72450 * 5 3 2 34 34 H 1.09005 * 109.50340 * 56.84348 * 5 3 2 35 35 H 1.08995 * 109.47465 * 60.00085 * 8 7 6 36 36 H 1.09003 * 109.46878 * 180.02562 * 8 7 6 37 37 H 1.09000 * 109.47055 * 299.99446 * 8 7 6 38 38 H 1.08998 * 109.47285 * 60.00144 * 9 7 6 39 39 H 1.09008 * 109.46827 * 179.97438 * 9 7 6 40 40 H 1.08993 * 109.47320 * 299.99912 * 9 7 6 41 41 H 1.09002 * 109.50410 * 183.21773 * 10 7 6 42 42 H 1.09002 * 109.50903 * 63.08987 * 10 7 6 43 43 H 1.09003 * 109.46979 * 292.20362 * 12 11 10 44 44 H 1.09000 * 109.47705 * 172.20644 * 12 11 10 45 45 H 1.07993 * 119.96931 * 359.97438 * 14 13 12 46 46 H 1.07998 * 120.03702 * 180.27627 * 15 14 13 47 47 H 0.97004 * 119.99735 * 180.02562 * 21 20 18 48 48 H 1.08000 * 120.03613 * 179.97438 * 26 16 15 49 49 H 1.08002 * 119.96166 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6008 1.9838 -0.8380 5 6 1.6458 2.1241 1.3130 6 8 2.1890 3.4468 1.3394 7 6 3.6135 3.4867 1.2184 8 6 4.0860 4.9419 1.2231 9 6 4.2471 2.7401 2.3940 10 6 4.0276 2.8189 -0.0955 11 7 3.5046 1.4454 -0.1272 12 6 3.9283 0.7487 -1.3491 13 6 5.4237 0.8602 -1.4980 14 6 5.9705 1.9214 -2.1965 15 6 7.3408 2.0294 -2.3298 16 6 8.1695 1.0651 -1.7711 17 8 9.5167 1.1656 -1.9052 18 6 10.2566 0.1408 -1.4359 19 1 9.7712 -0.7432 -1.0495 20 6 11.6407 0.2219 -1.4494 21 7 12.2319 1.2989 -1.9197 22 14 12.6659 -1.1976 -0.7986 23 1 12.3706 -2.4225 -1.5845 24 1 14.1077 -0.8652 -0.9241 25 1 12.3343 -1.4338 0.6295 26 6 7.6172 -0.0024 -1.0753 27 6 6.2463 -0.1022 -0.9414 28 1 -0.3633 -1.0267 0.0455 29 1 -0.3633 0.5526 0.8665 30 1 -0.3633 0.4740 -0.9118 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 0.5593 2.1753 1.3846 34 1 2.0400 1.5518 2.1528 35 1 3.7876 5.4179 2.1571 36 1 5.1717 4.9717 1.1303 37 1 3.6355 5.4729 0.3845 38 1 3.9113 1.7031 2.3892 39 1 5.3328 2.7705 2.3010 40 1 3.9488 3.2143 3.3289 41 1 5.1151 2.7961 -0.1652 42 1 3.6202 3.3829 -0.9346 43 1 3.4423 1.2023 -2.2130 44 1 3.6469 -0.3023 -1.2844 45 1 5.3253 2.6685 -2.6345 46 1 7.7674 2.8607 -2.8715 47 1 13.2002 1.3555 -1.9295 48 1 8.2590 -0.7541 -0.6400 49 1 5.8162 -0.9319 -0.4000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844387858.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:46 Heat of formation + Delta-G solvation = -66.623720 kcal Electronic energy + Delta-G solvation = -27821.594309 eV Core-core repulsion = 24134.474089 eV Total energy + Delta-G solvation = -3687.120220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.46957 -40.63649 -38.62271 -37.13056 -35.36824 -34.29454 -33.31915 -31.84931 -31.26016 -28.88106 -28.03663 -27.94390 -27.12147 -25.25365 -23.92726 -23.58643 -22.05845 -21.54705 -20.22956 -19.80846 -18.81786 -17.64550 -17.17537 -16.59072 -16.49086 -16.24801 -16.05355 -15.60673 -15.48422 -15.32502 -15.23892 -14.82062 -14.67049 -14.47996 -14.27876 -13.98744 -13.67543 -13.60701 -13.44283 -13.08329 -13.02239 -12.92973 -12.72808 -12.64779 -12.43504 -12.40157 -12.30570 -12.14851 -12.10441 -12.03292 -11.67041 -11.58405 -11.19743 -11.11757 -10.77989 -10.42983 -9.76341 -9.31880 -8.87326 -8.47231 -6.15109 0.58870 0.66556 1.35027 1.45472 1.51130 2.17861 2.66497 2.79843 2.97353 3.24511 3.50160 3.73444 3.84399 3.86810 4.00061 4.05470 4.10742 4.13878 4.20184 4.25973 4.41580 4.45861 4.53810 4.58210 4.59006 4.66195 4.71138 4.75082 4.79880 4.81037 4.85996 4.89108 4.94010 5.00437 5.06109 5.09034 5.14605 5.22225 5.24582 5.29165 5.32221 5.37649 5.45413 5.55721 5.71748 5.79563 6.02078 6.03696 6.09896 6.22663 6.30345 6.97626 7.78459 8.75850 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.018156 B = 0.003042 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.804647 B = 9200.989280 C = 9750.840859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C 0.051 3.949 4 H 0.041 0.959 5 C 0.064 3.936 6 O -0.392 6.392 7 C 0.113 3.887 8 C -0.138 4.138 9 C -0.161 4.161 10 C 0.035 3.965 11 N -0.529 5.529 12 C 0.114 3.886 13 C -0.156 4.156 14 C -0.059 4.059 15 C -0.203 4.203 16 C 0.117 3.883 17 O -0.232 6.232 18 C -0.413 4.413 19 H 0.101 0.899 20 C -0.022 4.022 21 N -0.921 5.921 22 Si 1.017 2.983 23 H -0.257 1.257 24 H -0.272 1.272 25 H -0.257 1.257 26 C -0.242 4.242 27 C -0.047 4.047 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.114 0.886 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.034 0.966 43 H 0.042 0.958 44 H 0.097 0.903 45 H 0.136 0.864 46 H 0.111 0.889 47 H 0.273 0.727 48 H 0.117 0.883 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.359 -0.993 6.383 24.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.057 4.057 4 H 0.059 0.941 5 C -0.012 4.012 6 O -0.311 6.311 7 C 0.074 3.926 8 C -0.195 4.195 9 C -0.219 4.219 10 C -0.093 4.093 11 N -0.253 5.253 12 C -0.012 4.012 13 C -0.157 4.157 14 C -0.077 4.077 15 C -0.222 4.222 16 C 0.067 3.933 17 O -0.139 6.139 18 C -0.489 4.489 19 H 0.118 0.882 20 C -0.220 4.220 21 N -0.559 5.559 22 Si 0.836 3.164 23 H -0.181 1.181 24 H -0.197 1.197 25 H -0.181 1.181 26 C -0.261 4.261 27 C -0.065 4.065 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.132 0.868 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.052 0.948 43 H 0.060 0.940 44 H 0.115 0.885 45 H 0.153 0.847 46 H 0.129 0.871 47 H 0.082 0.918 48 H 0.135 0.865 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -22.944 -0.823 6.670 23.908 hybrid contribution 0.984 -0.090 -0.732 1.230 sum -21.960 -0.913 5.939 22.767 Atomic orbital electron populations 1.21793 0.94176 1.02582 1.02200 1.21550 0.96606 0.93908 1.03109 1.22404 0.87093 0.98054 0.98167 0.94061 1.22889 0.99398 0.83005 0.95927 1.87982 1.20635 1.28348 1.94163 1.21593 0.80806 0.96390 0.93816 1.21753 1.01438 0.93104 1.03250 1.22194 1.00782 1.01335 0.97580 1.22748 1.01007 0.88770 0.96814 1.62304 1.09964 1.15368 1.37713 1.20894 0.89787 1.00226 0.90313 1.19503 0.95526 0.96948 1.03702 1.20800 0.92477 0.97364 0.97079 1.20374 0.93619 1.00731 1.07506 1.19912 0.84326 0.94964 0.94142 1.83947 1.13636 1.43797 1.72475 1.21763 0.88846 0.95685 1.42630 0.88176 1.26572 0.96973 1.01438 0.96966 1.70179 1.10770 1.29789 1.45170 0.84673 0.76471 0.76089 0.79168 1.18149 1.19655 1.18132 1.21244 0.96707 1.01056 1.07100 1.20860 0.91204 0.98256 0.96193 0.91575 0.91870 0.92711 0.91299 0.91100 0.86838 0.92095 0.90938 0.90827 0.91851 0.91457 0.92570 0.91844 0.90435 0.94757 0.93981 0.88513 0.84659 0.87092 0.91842 0.86483 0.84522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.73 71.98 0.70 -0.94 16 2 C -0.11 -1.65 5.25 30.59 0.16 -1.49 16 3 C 0.05 0.94 2.05 44.93 0.09 1.04 16 4 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 5 C 0.06 1.17 5.58 72.02 0.40 1.57 16 6 O -0.39 -9.07 10.28 -148.98 -1.53 -10.60 16 7 C 0.11 2.62 1.11 -10.76 -0.01 2.61 16 8 C -0.14 -2.88 8.85 71.98 0.64 -2.24 16 9 C -0.16 -3.72 8.17 71.98 0.59 -3.13 16 10 C 0.03 0.87 3.56 86.31 0.31 1.18 16 11 N -0.53 -12.00 4.01 -874.56 -3.50 -15.50 16 12 C 0.11 2.66 4.71 85.56 0.40 3.06 16 13 C -0.16 -4.76 4.39 -19.83 -0.09 -4.85 16 14 C -0.06 -1.95 7.82 22.26 0.17 -1.77 16 15 C -0.20 -8.59 9.99 22.39 0.22 -8.36 16 16 C 0.12 5.80 6.65 22.58 0.15 5.95 16 17 O -0.23 -13.99 9.76 -22.72 -0.22 -14.21 16 18 C -0.41 -24.09 9.45 67.92 0.64 -23.45 16 19 H 0.10 5.35 5.27 -2.91 -0.02 5.34 16 20 C -0.02 -1.25 5.49 84.83 0.47 -0.79 16 21 N -0.92 -56.69 13.67 21.61 0.30 -56.39 16 22 Si 1.02 42.82 29.55 68.60 2.03 44.85 16 23 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 25 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 26 C -0.24 -10.46 9.14 22.39 0.20 -10.25 16 27 C -0.05 -1.59 9.69 22.25 0.22 -1.37 16 28 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.61 6.54 -2.39 -0.02 0.59 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 1.02 6.18 -2.39 -0.01 1.00 16 32 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.11 1.60 6.69 -2.38 -0.02 1.58 16 34 H 0.06 1.12 6.50 -2.38 -0.02 1.11 16 35 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.07 1.58 6.13 -2.39 -0.01 1.57 16 39 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 40 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.08 2.28 5.87 -2.39 -0.01 2.26 16 42 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.04 0.93 8.08 -2.39 -0.02 0.91 16 44 H 0.10 1.98 6.33 -2.39 -0.02 1.97 16 45 H 0.14 3.71 8.05 -2.91 -0.02 3.69 16 46 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 47 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 48 H 0.12 5.19 5.70 -2.91 -0.02 5.17 16 49 H 0.14 3.87 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -68.56 377.42 3.26 -65.30 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.93 Total: 29.79 kcal Atomic # 6 Polarization: -48.50 SS G_CDS: 5.27 Total: -43.23 kcal Atomic # 7 Polarization: -68.69 SS G_CDS: -3.21 Total: -71.89 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -1.75 Total: -24.81 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -68.56 3.26 -65.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844387858.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.325 kcal (2) G-P(sol) polarization free energy of solvation -68.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds