Wall clock time and date at job start Tue Mar 31 2020 13:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.46975 * 2 1 4 4 C 1.52999 * 109.46898 * 240.00150 * 2 1 3 5 5 O 1.45193 * 109.47198 * 119.99853 * 2 1 3 6 6 C 1.34230 * 116.99696 * 59.99792 * 5 2 1 7 7 O 1.20827 * 120.00379 * 0.02562 * 6 5 2 8 8 C 1.50702 * 119.99916 * 179.97438 * 6 5 2 9 9 C 1.53001 * 109.47389 * 205.00064 * 8 6 5 10 10 C 1.53003 * 109.47287 * 85.00180 * 8 6 5 11 11 N 1.46503 * 109.47266 * 325.00207 * 8 6 5 12 12 C 1.39671 * 120.00221 * 184.82947 * 11 8 6 13 13 C 1.38919 * 120.07262 * 353.06324 * 12 11 8 14 14 C 1.38105 * 119.91960 * 179.76705 * 13 12 11 15 15 C 1.38278 * 120.07805 * 0.51592 * 14 13 12 16 16 C 1.50700 * 119.92832 * 179.72052 * 15 14 13 17 17 C 1.50699 * 109.47058 * 270.02354 * 16 15 14 18 18 H 1.07997 * 120.00057 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99879 * 179.97438 * 17 16 15 20 20 N 1.31521 * 120.00152 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 120.00333 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47478 * 89.99688 * 21 19 17 23 23 H 1.48502 * 109.47421 * 209.99897 * 21 19 17 24 24 H 1.48500 * 109.46872 * 329.99823 * 21 19 17 25 25 C 1.38289 * 120.14907 * 359.73774 * 15 14 13 26 26 C 1.38103 * 120.07481 * 0.02562 * 25 15 14 27 27 H 1.09005 * 109.47289 * 300.00359 * 1 2 3 28 28 H 1.09007 * 109.47288 * 60.00031 * 1 2 3 29 29 H 1.08996 * 109.47808 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47226 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.47436 * 299.99679 * 3 2 1 32 32 H 1.08994 * 109.47521 * 60.00193 * 3 2 1 33 33 H 1.09001 * 109.47180 * 299.99689 * 4 2 1 34 34 H 1.08997 * 109.47215 * 59.99796 * 4 2 1 35 35 H 1.09005 * 109.47205 * 180.02562 * 4 2 1 36 36 H 1.08998 * 109.47112 * 172.39263 * 9 8 6 37 37 H 1.08994 * 109.47066 * 292.40082 * 9 8 6 38 38 H 1.09000 * 109.47048 * 52.39562 * 9 8 6 39 39 H 1.08995 * 109.47033 * 309.42481 * 10 8 6 40 40 H 1.08998 * 109.47058 * 69.41984 * 10 8 6 41 41 H 1.08998 * 109.47195 * 189.42026 * 10 8 6 42 42 H 0.96998 * 119.99866 * 4.82663 * 11 8 6 43 43 H 1.07998 * 120.03914 * 0.02562 * 13 12 11 44 44 H 1.08005 * 119.96053 * 180.25428 * 14 13 12 45 45 H 1.09004 * 109.47168 * 30.02067 * 16 15 14 46 46 H 1.08999 * 109.47436 * 150.01967 * 16 15 14 47 47 H 0.96994 * 120.00352 * 180.02562 * 20 19 17 48 48 H 1.08003 * 119.95982 * 180.02562 * 25 15 14 49 49 H 1.07998 * 120.03517 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6533 -1.9683 1.3378 7 8 0.9565 -2.5027 0.5078 8 6 2.1182 -2.7437 2.5435 9 6 2.1346 -4.2377 2.2140 10 6 1.1640 -2.4898 3.7123 11 7 3.4681 -2.3101 2.9123 12 6 4.1530 -2.9584 3.9425 13 6 3.5061 -3.9161 4.7135 14 6 4.1877 -4.5587 5.7283 15 6 5.5092 -4.2423 5.9842 16 6 6.2479 -4.9411 7.0965 17 6 6.0760 -4.1667 8.3778 18 1 5.4908 -3.2590 8.3858 19 6 6.6658 -4.6169 9.5398 20 7 6.5162 -3.9408 10.6580 21 14 7.6786 -6.1864 9.5259 22 1 9.0958 -5.8585 9.2272 23 1 7.5920 -6.8433 10.8549 24 1 7.1531 -7.1053 8.4844 25 6 6.1546 -3.2857 5.2220 26 6 5.4804 -2.6427 4.2026 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7216 -1.2491 36 1 2.5967 -4.7858 3.0351 37 1 1.1129 -4.5896 2.0716 38 1 2.7061 -4.4020 1.3004 39 1 1.0226 -1.4165 3.8393 40 1 0.2030 -2.9608 3.5057 41 1 1.5865 -2.9111 4.6244 42 1 3.8864 -1.5727 2.4408 43 1 2.4728 -4.1607 4.5168 44 1 3.6867 -5.3063 6.3254 45 1 5.8469 -5.9468 7.2232 46 1 7.3074 -5.0011 6.8475 47 1 6.9315 -4.2574 11.4754 48 1 7.1869 -3.0412 5.4243 49 1 5.9849 -1.8955 3.6080 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169584054.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:05 Heat of formation + Delta-G solvation = -54.768678 kcal Electronic energy + Delta-G solvation = -27250.086702 eV Core-core repulsion = 23563.480556 eV Total energy + Delta-G solvation = -3686.606147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.41734 -39.42950 -37.67879 -36.45445 -34.36004 -33.26659 -32.01152 -30.47521 -29.75241 -27.82101 -27.78411 -27.47837 -26.87990 -24.69305 -22.52082 -22.18461 -21.07766 -20.13832 -19.49362 -17.82133 -17.15449 -16.70442 -16.58325 -16.19848 -15.27210 -15.16799 -14.72516 -14.53662 -14.09210 -14.00541 -13.92934 -13.73067 -13.15647 -13.07556 -12.99178 -12.83089 -12.52654 -12.44601 -12.34988 -12.29113 -12.19338 -12.07077 -11.82459 -11.76373 -11.66212 -11.52734 -11.41033 -11.22932 -10.75002 -10.60148 -10.29413 -10.24551 -9.99641 -9.84179 -9.45459 -9.13866 -8.53114 -8.27922 -6.84585 -6.02146 -4.00184 1.82693 2.04055 2.23236 2.30129 3.31981 3.39539 3.39776 3.43043 4.20083 4.31424 4.36230 4.46166 4.50305 4.51294 4.63886 4.76624 5.09682 5.14386 5.28639 5.29923 5.31454 5.36391 5.42026 5.43633 5.46244 5.47215 5.50251 5.59281 5.61389 5.63444 5.85205 5.87540 5.91512 5.97195 6.05382 6.10212 6.20605 6.21224 6.32211 6.60966 6.74429 7.05806 7.08619 7.16019 7.30810 7.47212 7.71309 7.72815 7.79050 7.95411 8.57188 9.04638 9.59034 11.10990 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.028655 B = 0.002475 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.904248 B =11308.924683 C =11519.688375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.115 3.885 3 C -0.141 4.141 4 C -0.183 4.183 5 O -0.346 6.346 6 C 0.474 3.526 7 O -0.495 6.495 8 C 0.202 3.798 9 C -0.169 4.169 10 C -0.180 4.180 11 N -0.745 5.745 12 C 0.188 3.812 13 C -0.208 4.208 14 C -0.079 4.079 15 C -0.077 4.077 16 C 0.019 3.981 17 C -0.509 4.509 18 H 0.073 0.927 19 C 0.066 3.934 20 N -0.903 5.903 21 Si 0.877 3.123 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.265 1.265 25 C -0.077 4.077 26 C -0.187 4.187 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.100 0.900 42 H 0.401 0.599 43 H 0.129 0.871 44 H 0.118 0.882 45 H 0.024 0.976 46 H 0.020 0.980 47 H 0.263 0.737 48 H 0.118 0.882 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.224 6.814 -23.495 26.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.079 3.921 3 C -0.198 4.198 4 C -0.240 4.240 5 O -0.263 6.263 6 C 0.316 3.684 7 O -0.381 6.381 8 C 0.113 3.887 9 C -0.227 4.227 10 C -0.238 4.238 11 N -0.381 5.381 12 C 0.090 3.910 13 C -0.230 4.230 14 C -0.098 4.098 15 C -0.079 4.079 16 C -0.018 4.018 17 C -0.547 4.547 18 H 0.091 0.909 19 C -0.134 4.134 20 N -0.542 5.542 21 Si 0.705 3.295 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.189 1.189 25 C -0.095 4.095 26 C -0.209 4.209 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.119 0.881 42 H 0.237 0.763 43 H 0.146 0.854 44 H 0.136 0.864 45 H 0.042 0.958 46 H 0.038 0.962 47 H 0.073 0.927 48 H 0.136 0.864 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.571 6.606 -23.611 27.111 hybrid contribution 0.622 -0.271 -0.126 0.690 sum -10.949 6.335 -23.736 26.897 Atomic orbital electron populations 1.22493 0.93956 1.04720 1.02860 1.22229 0.94472 0.92411 0.82947 1.21858 1.02399 0.92444 1.03143 1.22491 1.01836 1.03066 0.96639 1.86567 1.69411 1.25218 1.45092 1.23607 0.77572 0.80649 0.86602 1.90583 1.35355 1.70168 1.42020 1.19990 0.85169 0.93677 0.89891 1.22454 1.03585 0.92688 1.03940 1.22604 0.98700 1.03548 0.98953 1.44386 1.14565 1.39409 1.39744 1.17502 0.91106 0.93630 0.88803 1.20991 1.00208 1.01866 0.99893 1.20853 0.94216 0.98972 0.95727 1.20071 0.94355 0.97097 0.96357 1.18715 0.94713 0.95740 0.92660 1.21009 1.32554 1.10372 0.90762 0.90873 1.25020 0.96109 0.96888 0.95433 1.69908 1.45010 1.39440 0.99802 0.86810 0.80980 0.84307 0.77427 1.20270 1.21392 1.18925 1.20812 0.99648 0.95182 0.93889 1.20457 0.93100 1.04841 1.02535 0.91866 0.90988 0.89848 0.91317 0.90332 0.91316 0.89878 0.90974 0.91867 0.88476 0.90781 0.91845 0.91438 0.91160 0.88123 0.76306 0.85412 0.86435 0.95753 0.96217 0.92731 0.86438 0.87154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 8.37 37.16 0.31 -1.18 16 2 C 0.12 0.98 1.13 -90.62 -0.10 0.88 16 3 C -0.14 -0.92 8.85 37.16 0.33 -0.59 16 4 C -0.18 -1.50 8.37 37.16 0.31 -1.19 16 5 O -0.35 -3.65 9.05 -39.26 -0.36 -4.00 16 6 C 0.47 5.38 6.04 36.01 0.22 5.60 16 7 O -0.49 -6.16 11.74 -18.75 -0.22 -6.38 16 8 C 0.20 2.28 1.01 -132.97 -0.13 2.15 16 9 C -0.17 -1.86 7.63 37.16 0.28 -1.58 16 10 C -0.18 -1.94 8.30 37.16 0.31 -1.63 16 11 N -0.75 -9.21 5.20 -47.06 -0.24 -9.46 16 12 C 0.19 2.83 6.22 -83.79 -0.52 2.31 16 13 C -0.21 -3.24 6.55 -39.38 -0.26 -3.50 16 14 C -0.08 -1.46 9.69 -39.62 -0.38 -1.84 16 15 C -0.08 -1.61 5.07 -104.59 -0.53 -2.14 16 16 C 0.02 0.45 4.17 -29.04 -0.12 0.33 16 17 C -0.51 -14.46 9.65 -34.44 -0.33 -14.79 16 18 H 0.07 2.28 7.98 -52.49 -0.42 1.86 16 19 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 20 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 21 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 25 C -0.08 -1.44 9.69 -39.61 -0.38 -1.82 16 26 C -0.19 -3.01 9.90 -39.38 -0.39 -3.40 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.83 5.89 -51.93 -0.31 0.52 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.84 5.89 -51.93 -0.31 0.54 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.10 1.12 4.65 -51.93 -0.24 0.88 16 37 H 0.07 0.74 8.03 -51.93 -0.42 0.32 16 38 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 39 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 40 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 41 H 0.10 1.19 4.80 -51.93 -0.25 0.94 16 42 H 0.40 4.61 7.88 -40.82 -0.32 4.29 16 43 H 0.13 1.68 3.67 -52.49 -0.19 1.49 16 44 H 0.12 2.09 8.06 -52.48 -0.42 1.67 16 45 H 0.02 0.58 7.14 -51.93 -0.37 0.21 16 46 H 0.02 0.46 7.51 -51.93 -0.39 0.07 16 47 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 48 H 0.12 2.13 8.06 -52.48 -0.42 1.71 16 49 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 381.53 15.07 5.75 5.75 Total: -1.00 -31.33 381.53 -8.33 -39.66 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -7.87 Total: 5.18 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -1.49 Total: -20.56 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.53 Total: -36.46 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: -0.58 Total: -10.38 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.33 -8.33 -39.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169584054.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.112 kcal (2) G-P(sol) polarization free energy of solvation -31.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds