Wall clock time and date at job start Tue Mar 31 2020 13:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.46975 * 2 1 4 4 C 1.52999 * 109.46898 * 240.00150 * 2 1 3 5 5 O 1.45193 * 109.47198 * 119.99853 * 2 1 3 6 6 C 1.34230 * 116.99696 * 59.99792 * 5 2 1 7 7 O 1.20827 * 120.00379 * 0.02562 * 6 5 2 8 8 C 1.50702 * 119.99916 * 179.97438 * 6 5 2 9 9 C 1.53001 * 109.47389 * 205.00064 * 8 6 5 10 10 C 1.53003 * 109.47287 * 85.00180 * 8 6 5 11 11 N 1.46503 * 109.47266 * 325.00207 * 8 6 5 12 12 C 1.39671 * 120.00221 * 184.82947 * 11 8 6 13 13 C 1.38919 * 120.07262 * 353.06324 * 12 11 8 14 14 C 1.38105 * 119.91960 * 179.76705 * 13 12 11 15 15 C 1.38278 * 120.07805 * 0.51592 * 14 13 12 16 16 C 1.50700 * 119.92832 * 179.72052 * 15 14 13 17 17 C 1.50699 * 109.47058 * 270.02354 * 16 15 14 18 18 H 1.07997 * 120.00057 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99879 * 179.97438 * 17 16 15 20 20 N 1.31521 * 120.00152 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 120.00333 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47478 * 89.99688 * 21 19 17 23 23 H 1.48502 * 109.47421 * 209.99897 * 21 19 17 24 24 H 1.48500 * 109.46872 * 329.99823 * 21 19 17 25 25 C 1.38289 * 120.14907 * 359.73774 * 15 14 13 26 26 C 1.38103 * 120.07481 * 0.02562 * 25 15 14 27 27 H 1.09005 * 109.47289 * 300.00359 * 1 2 3 28 28 H 1.09007 * 109.47288 * 60.00031 * 1 2 3 29 29 H 1.08996 * 109.47808 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47226 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.47436 * 299.99679 * 3 2 1 32 32 H 1.08994 * 109.47521 * 60.00193 * 3 2 1 33 33 H 1.09001 * 109.47180 * 299.99689 * 4 2 1 34 34 H 1.08997 * 109.47215 * 59.99796 * 4 2 1 35 35 H 1.09005 * 109.47205 * 180.02562 * 4 2 1 36 36 H 1.08998 * 109.47112 * 172.39263 * 9 8 6 37 37 H 1.08994 * 109.47066 * 292.40082 * 9 8 6 38 38 H 1.09000 * 109.47048 * 52.39562 * 9 8 6 39 39 H 1.08995 * 109.47033 * 309.42481 * 10 8 6 40 40 H 1.08998 * 109.47058 * 69.41984 * 10 8 6 41 41 H 1.08998 * 109.47195 * 189.42026 * 10 8 6 42 42 H 0.96998 * 119.99866 * 4.82663 * 11 8 6 43 43 H 1.07998 * 120.03914 * 0.02562 * 13 12 11 44 44 H 1.08005 * 119.96053 * 180.25428 * 14 13 12 45 45 H 1.09004 * 109.47168 * 30.02067 * 16 15 14 46 46 H 1.08999 * 109.47436 * 150.01967 * 16 15 14 47 47 H 0.96994 * 120.00352 * 180.02562 * 20 19 17 48 48 H 1.08003 * 119.95982 * 180.02562 * 25 15 14 49 49 H 1.07998 * 120.03517 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6533 -1.9683 1.3378 7 8 0.9565 -2.5027 0.5078 8 6 2.1182 -2.7437 2.5435 9 6 2.1346 -4.2377 2.2140 10 6 1.1640 -2.4898 3.7123 11 7 3.4681 -2.3101 2.9123 12 6 4.1530 -2.9584 3.9425 13 6 3.5061 -3.9161 4.7135 14 6 4.1877 -4.5587 5.7283 15 6 5.5092 -4.2423 5.9842 16 6 6.2479 -4.9411 7.0965 17 6 6.0760 -4.1667 8.3778 18 1 5.4908 -3.2590 8.3858 19 6 6.6658 -4.6169 9.5398 20 7 6.5162 -3.9408 10.6580 21 14 7.6786 -6.1864 9.5259 22 1 9.0958 -5.8585 9.2272 23 1 7.5920 -6.8433 10.8549 24 1 7.1531 -7.1053 8.4844 25 6 6.1546 -3.2857 5.2220 26 6 5.4804 -2.6427 4.2026 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7216 -1.2491 36 1 2.5967 -4.7858 3.0351 37 1 1.1129 -4.5896 2.0716 38 1 2.7061 -4.4020 1.3004 39 1 1.0226 -1.4165 3.8393 40 1 0.2030 -2.9608 3.5057 41 1 1.5865 -2.9111 4.6244 42 1 3.8864 -1.5727 2.4408 43 1 2.4728 -4.1607 4.5168 44 1 3.6867 -5.3063 6.3254 45 1 5.8469 -5.9468 7.2232 46 1 7.3074 -5.0011 6.8475 47 1 6.9315 -4.2574 11.4754 48 1 7.1869 -3.0412 5.4243 49 1 5.9849 -1.8955 3.6080 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169584054.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:01 Heat of formation + Delta-G solvation = -71.500787 kcal Electronic energy + Delta-G solvation = -27250.812261 eV Core-core repulsion = 23563.480556 eV Total energy + Delta-G solvation = -3687.331705 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 3.81 seconds Orbital eigenvalues (eV) -42.27633 -40.61452 -38.62339 -37.55624 -35.26973 -34.94510 -33.52311 -31.95985 -31.15654 -28.49644 -28.46464 -28.34461 -28.26735 -25.80106 -24.20143 -23.49274 -21.95198 -21.58474 -20.36912 -18.90405 -18.80730 -18.11668 -17.47033 -17.09123 -16.66890 -16.23853 -16.03281 -15.49515 -15.43108 -15.14933 -14.80057 -14.71060 -14.58459 -14.36896 -14.16879 -14.03611 -13.53058 -13.43731 -13.43092 -13.14895 -13.08262 -12.95332 -12.91663 -12.86339 -12.80315 -12.54044 -12.45933 -12.38362 -12.15991 -11.95485 -11.67546 -11.51662 -11.45173 -11.37257 -10.94214 -10.73868 -10.68506 -9.63152 -8.26211 -8.12616 -6.28686 0.68116 0.84481 0.97273 1.38964 1.40589 1.48094 1.52949 2.34347 2.39284 3.09384 3.12381 3.37762 3.67877 3.74274 3.78161 3.85611 3.92086 4.11817 4.20675 4.44408 4.49785 4.54621 4.57527 4.59005 4.65502 4.71729 4.73231 4.76903 4.77203 4.80013 4.84644 4.85678 4.98557 5.06487 5.10427 5.16864 5.18862 5.20947 5.22853 5.24603 5.35437 5.44147 5.52182 5.63701 5.70014 5.99059 6.18445 6.32686 6.45305 6.64161 6.78278 6.84720 7.34552 8.91663 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.028655 B = 0.002475 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.904248 B =11308.924683 C =11519.688375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.105 3.895 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.352 6.352 6 C 0.477 3.523 7 O -0.506 6.506 8 C 0.198 3.802 9 C -0.166 4.166 10 C -0.179 4.179 11 N -0.734 5.734 12 C 0.202 3.798 13 C -0.202 4.202 14 C -0.089 4.089 15 C -0.117 4.117 16 C 0.026 3.974 17 C -0.514 4.514 18 H 0.027 0.973 19 C 0.004 3.996 20 N -0.952 5.952 21 Si 0.950 3.050 22 H -0.266 1.266 23 H -0.284 1.284 24 H -0.246 1.246 25 C -0.088 4.088 26 C -0.188 4.188 27 H 0.063 0.937 28 H 0.091 0.909 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.408 0.592 43 H 0.154 0.846 44 H 0.117 0.883 45 H 0.026 0.974 46 H 0.024 0.976 47 H 0.266 0.734 48 H 0.115 0.885 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.711 6.831 -25.977 29.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.070 3.930 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.269 6.269 6 C 0.319 3.681 7 O -0.394 6.394 8 C 0.110 3.890 9 C -0.224 4.224 10 C -0.237 4.237 11 N -0.370 5.370 12 C 0.102 3.898 13 C -0.224 4.224 14 C -0.108 4.108 15 C -0.119 4.119 16 C -0.011 4.011 17 C -0.552 4.552 18 H 0.045 0.955 19 C -0.192 4.192 20 N -0.593 5.593 21 Si 0.774 3.226 22 H -0.192 1.192 23 H -0.210 1.210 24 H -0.169 1.169 25 C -0.107 4.107 26 C -0.210 4.210 27 H 0.082 0.918 28 H 0.110 0.890 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.118 0.882 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.245 0.755 43 H 0.171 0.829 44 H 0.135 0.865 45 H 0.045 0.955 46 H 0.042 0.958 47 H 0.075 0.925 48 H 0.133 0.867 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.074 6.644 -26.135 29.546 hybrid contribution 0.636 -0.112 0.519 0.828 sum -11.438 6.532 -25.616 28.804 Atomic orbital electron populations 1.22468 0.93680 1.03713 1.03893 1.22545 0.94848 0.93308 0.82290 1.21886 1.02443 0.91029 1.04160 1.22462 1.01824 1.02033 0.97395 1.86557 1.69404 1.24746 1.46160 1.23476 0.77382 0.80955 0.86263 1.90594 1.35921 1.70519 1.42326 1.20107 0.84498 0.94030 0.90366 1.22427 1.04275 0.92248 1.03473 1.22583 0.99313 1.03746 0.98027 1.44395 1.14907 1.39002 1.38648 1.17556 0.90869 0.92769 0.88643 1.21203 1.01189 1.01207 0.98758 1.20932 0.93615 0.99546 0.96702 1.19937 0.95580 0.99244 0.97136 1.18553 0.95450 0.95407 0.91711 1.21258 1.31456 1.09252 0.93219 0.95469 1.26002 0.97548 1.00887 0.94807 1.70070 1.46724 1.41784 1.00730 0.85653 0.79329 0.79675 0.77982 1.19152 1.20986 1.16931 1.20868 0.99874 0.95287 0.94686 1.20656 0.93539 1.04877 1.01916 0.91827 0.89011 0.91782 0.91276 0.88194 0.91444 0.91943 0.88988 0.91823 0.88965 0.89599 0.92222 0.91390 0.89466 0.89099 0.75512 0.82888 0.86479 0.95545 0.95821 0.92532 0.86677 0.84571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.58 8.37 71.98 0.60 -1.98 16 2 C 0.11 1.58 1.13 -10.80 -0.01 1.56 16 3 C -0.14 -1.44 8.85 71.98 0.64 -0.80 16 4 C -0.18 -2.60 8.37 71.98 0.60 -2.00 16 5 O -0.35 -6.75 9.05 -51.42 -0.47 -7.21 16 6 C 0.48 9.99 6.04 71.24 0.43 10.42 16 7 O -0.51 -11.87 11.74 21.96 0.26 -11.61 16 8 C 0.20 4.08 1.01 2.86 0.00 4.08 16 9 C -0.17 -3.33 7.63 71.98 0.55 -2.78 16 10 C -0.18 -3.47 8.30 71.98 0.60 -2.88 16 11 N -0.73 -16.58 5.20 -302.79 -1.57 -18.15 16 12 C 0.20 5.75 6.22 38.22 0.24 5.99 16 13 C -0.20 -6.06 6.55 22.40 0.15 -5.91 16 14 C -0.09 -3.30 9.69 22.25 0.22 -3.09 16 15 C -0.12 -4.95 5.07 -19.84 -0.10 -5.05 16 16 C 0.03 1.26 4.17 29.10 0.12 1.38 16 17 C -0.51 -30.26 9.65 25.60 0.25 -30.01 16 18 H 0.03 1.79 7.98 -2.91 -0.02 1.77 16 19 C 0.00 0.23 5.47 84.65 0.46 0.69 16 20 N -0.95 -60.48 13.96 21.45 0.30 -60.18 16 21 Si 0.95 44.60 27.47 68.60 1.88 46.48 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 23 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.25 -10.70 6.54 99.48 0.65 -10.05 16 25 C -0.09 -3.33 9.69 22.25 0.22 -3.11 16 26 C -0.19 -5.79 9.90 22.40 0.22 -5.57 16 27 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.06 1.19 5.89 -2.39 -0.01 1.17 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 1.18 5.89 -2.39 -0.01 1.17 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.09 1.94 4.65 -2.39 -0.01 1.93 16 37 H 0.09 1.52 8.03 -2.39 -0.02 1.50 16 38 H 0.06 1.24 8.13 -2.39 -0.02 1.22 16 39 H 0.07 1.32 8.11 -2.39 -0.02 1.30 16 40 H 0.09 1.41 8.07 -2.39 -0.02 1.39 16 41 H 0.09 1.97 4.80 -2.39 -0.01 1.96 16 42 H 0.41 8.38 7.88 -92.71 -0.73 7.65 16 43 H 0.15 3.75 3.67 -2.91 -0.01 3.74 16 44 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 45 H 0.03 1.25 7.14 -2.39 -0.02 1.23 16 46 H 0.02 1.11 7.51 -2.39 -0.02 1.09 16 47 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 48 H 0.12 4.25 8.06 -2.91 -0.02 4.22 16 49 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -69.71 381.53 5.74 -63.97 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: 0.16 Total: 25.74 kcal Atomic # 6 Polarization: -44.21 SS G_CDS: 5.18 Total: -39.03 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -1.27 Total: -78.34 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.21 Total: -18.83 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.88 Total: 46.48 kcal Total: -69.71 5.74 -63.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169584054.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.534 kcal (2) G-P(sol) polarization free energy of solvation -69.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.81 seconds