Wall clock time and date at job start Tue Mar 31 2020 12:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46999 * 2 1 4 4 C 1.53006 * 109.46999 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46921 * 179.97438 * 4 3 2 6 6 C 1.37093 * 119.99838 * 269.99857 * 5 4 3 7 7 H 1.08000 * 119.99993 * 145.30948 * 6 5 4 8 8 C 1.38949 * 120.00671 * 325.31323 * 6 5 4 9 9 N 1.31421 * 119.99262 * 337.26215 * 8 6 5 10 10 Si 1.86790 * 120.00685 * 157.26689 * 8 6 5 11 11 H 1.48503 * 109.47461 * 89.99633 * 10 8 6 12 12 H 1.48494 * 109.47425 * 210.00027 * 10 8 6 13 13 H 1.48505 * 109.47056 * 330.00018 * 10 8 6 14 14 C 1.34773 * 119.99906 * 90.00234 * 5 4 3 15 15 O 1.21291 * 119.99873 * 4.88543 * 14 5 4 16 16 C 1.50699 * 120.00079 * 184.88044 * 14 5 4 17 17 C 1.53004 * 109.47110 * 177.72119 * 16 14 5 18 18 C 1.50693 * 109.46807 * 180.02562 * 17 16 14 19 19 C 1.38272 * 119.94383 * 90.00467 * 18 17 16 20 20 C 1.38146 * 120.05535 * 179.97438 * 19 18 17 21 21 C 1.50706 * 120.02488 * 179.97438 * 20 19 18 22 22 C 1.38729 * 119.94558 * 359.97438 * 20 19 18 23 23 O 1.35905 * 120.05728 * 180.02562 * 22 20 19 24 24 C 1.38732 * 119.89059 * 0.27830 * 22 20 19 25 25 C 1.50691 * 120.03022 * 179.71841 * 24 22 20 26 26 C 1.38150 * 119.94085 * 359.42286 * 24 22 20 27 27 H 1.08992 * 109.46950 * 59.99635 * 1 2 3 28 28 H 1.09001 * 109.47260 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46807 * 299.99822 * 1 2 3 30 30 H 1.09001 * 109.46807 * 240.00178 * 2 1 3 31 31 H 1.08998 * 109.47058 * 119.99915 * 2 1 3 32 32 H 1.09001 * 109.47196 * 60.00416 * 3 2 1 33 33 H 1.08998 * 109.47147 * 299.99861 * 3 2 1 34 34 H 1.09001 * 109.46807 * 60.00178 * 4 3 2 35 35 H 1.08992 * 109.46950 * 300.00365 * 4 3 2 36 36 H 0.97001 * 119.99630 * 185.01956 * 9 8 6 37 37 H 1.09001 * 109.46983 * 57.72297 * 16 14 5 38 38 H 1.09001 * 109.47195 * 297.72597 * 16 14 5 39 39 H 1.09001 * 109.47053 * 60.00221 * 17 16 14 40 40 H 1.09001 * 109.46959 * 300.00361 * 17 16 14 41 41 H 1.07998 * 119.97189 * 359.97154 * 19 18 17 42 42 H 1.08994 * 109.46707 * 270.02066 * 21 20 19 43 43 H 1.08998 * 109.47089 * 30.02246 * 21 20 19 44 44 H 1.09003 * 109.46449 * 150.01920 * 21 20 19 45 45 H 0.96704 * 113.99459 * 89.99754 * 23 22 20 46 46 H 1.09006 * 109.47298 * 90.00247 * 25 24 22 47 47 H 1.09000 * 109.47682 * 209.99860 * 25 24 22 48 48 H 1.09003 * 109.47700 * 330.00075 * 25 24 22 49 49 H 1.08001 * 119.97393 * 180.31396 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8238 0.0000 6 6 4.2874 3.4693 -1.1875 7 1 4.0975 4.5292 -1.2714 8 6 4.7637 2.7601 -2.2834 9 7 5.4075 1.6285 -2.1042 10 14 4.4891 3.4150 -4.0110 11 1 5.6266 4.2887 -4.3959 12 1 4.3941 2.2785 -4.9620 13 1 3.2283 4.1987 -4.0487 14 6 4.2825 3.4598 1.1669 15 8 4.1654 2.8619 2.2157 16 6 4.6788 4.9137 1.1686 17 6 4.8156 5.4034 2.6118 18 6 5.2112 6.8574 2.6134 19 6 4.2362 7.8379 2.6171 20 6 4.5963 9.1717 2.6192 21 6 3.5331 10.2398 2.6226 22 6 5.9373 9.5269 2.6180 23 8 6.2941 10.8383 2.6205 24 6 6.9136 8.5413 2.6090 25 6 8.3712 8.9237 2.6013 26 6 6.5484 7.2090 2.6132 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9285 -0.8892 35 1 3.9330 0.9288 0.8908 36 1 5.8032 1.1704 -2.8622 37 1 3.9146 5.4991 0.6572 38 1 5.6320 5.0312 0.6531 39 1 5.5797 4.8179 3.1231 40 1 3.8623 5.2859 3.1272 41 1 3.1924 7.5609 2.6184 42 1 3.2752 10.4989 1.5958 43 1 2.6469 9.8686 3.1373 44 1 3.9085 11.1242 3.1374 45 1 6.3986 11.2157 3.5047 46 1 8.7290 9.0126 3.6271 47 1 8.9454 8.1567 2.0816 48 1 8.4938 9.8784 2.0897 49 1 7.3081 6.4413 2.6113 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182333261.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:40 Heat of formation + Delta-G solvation = -103.815049 kcal Electronic energy + Delta-G solvation = -26761.484025 eV Core-core repulsion = 23072.751068 eV Total energy + Delta-G solvation = -3688.732957 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.13267 -40.46502 -38.00373 -37.17423 -35.55342 -34.51768 -34.49323 -33.41685 -31.12433 -29.75647 -27.93099 -27.60386 -26.84422 -25.70104 -23.76121 -21.97320 -21.88843 -21.36029 -20.88137 -19.16208 -18.57526 -17.81914 -17.35791 -16.67677 -16.51128 -16.20922 -16.09020 -15.96510 -15.26654 -14.87790 -14.81810 -14.36046 -14.19562 -14.01670 -13.99871 -13.84539 -13.78539 -13.65726 -13.42132 -13.23384 -13.10186 -12.91638 -12.90485 -12.79071 -12.64859 -12.19952 -12.07598 -12.05344 -11.99639 -11.91672 -11.87035 -11.78329 -11.43231 -11.26622 -11.01370 -10.34064 -9.52603 -9.44047 -9.26568 -8.30419 -6.02448 0.28558 0.38194 1.39680 1.47329 1.58071 2.02526 2.31385 2.60584 2.97452 3.09813 3.35343 3.82826 3.83529 3.89532 4.07059 4.15496 4.25483 4.29511 4.30738 4.38760 4.46411 4.47948 4.57857 4.67322 4.75371 4.79238 4.80038 4.81283 4.83427 4.87657 4.89561 4.94377 4.99203 5.07375 5.09966 5.17816 5.19509 5.29178 5.36035 5.36647 5.43154 5.46942 5.49776 5.55987 5.59974 5.73339 5.96637 6.04044 6.43514 6.89658 7.12524 7.60560 8.04354 8.72169 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.012587 B = 0.003173 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.070970 B = 8823.399363 C = 9725.197582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.113 4.113 4 C 0.109 3.891 5 N -0.450 5.450 6 C -0.357 4.357 7 H 0.097 0.903 8 C 0.006 3.994 9 N -0.891 5.891 10 Si 0.978 3.022 11 H -0.272 1.272 12 H -0.280 1.280 13 H -0.261 1.261 14 C 0.453 3.547 15 O -0.637 6.637 16 C -0.098 4.098 17 C -0.050 4.050 18 C -0.083 4.083 19 C -0.118 4.118 20 C -0.113 4.113 21 C -0.104 4.104 22 C 0.089 3.911 23 O -0.497 6.497 24 C -0.114 4.114 25 C -0.107 4.107 26 C -0.121 4.121 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.039 0.961 33 H 0.054 0.946 34 H 0.092 0.908 35 H 0.031 0.969 36 H 0.273 0.727 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.132 0.868 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.404 0.596 46 H 0.084 0.916 47 H 0.067 0.933 48 H 0.074 0.926 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.789 13.464 6.393 15.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.152 4.152 4 C -0.014 4.014 5 N -0.168 5.168 6 C -0.484 4.484 7 H 0.115 0.885 8 C -0.197 4.197 9 N -0.529 5.529 10 Si 0.802 3.198 11 H -0.197 1.197 12 H -0.205 1.205 13 H -0.185 1.185 14 C 0.243 3.757 15 O -0.526 6.526 16 C -0.138 4.138 17 C -0.088 4.088 18 C -0.083 4.083 19 C -0.136 4.136 20 C -0.113 4.113 21 C -0.160 4.160 22 C 0.045 3.955 23 O -0.309 6.309 24 C -0.114 4.114 25 C -0.164 4.164 26 C -0.139 4.139 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.050 0.950 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.149 0.851 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.262 0.738 46 H 0.102 0.898 47 H 0.086 0.914 48 H 0.093 0.907 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.825 12.924 6.145 14.426 hybrid contribution 0.267 -0.219 -0.394 0.524 sum -1.558 12.704 5.752 14.032 Atomic orbital electron populations 1.21710 0.94022 1.02382 1.01824 1.21417 0.97210 0.95148 1.01670 1.21753 0.95293 0.97771 1.00334 1.21438 0.93428 0.84828 1.01724 1.43752 1.55557 1.12399 1.05059 1.19703 1.45695 0.95452 0.87567 0.88520 1.26131 0.93845 0.96124 1.03580 1.69968 1.31144 1.18641 1.33113 0.85162 0.79322 0.77995 0.77353 1.19746 1.20538 1.18497 1.21173 0.80047 0.90985 0.83489 1.90473 1.59330 1.69927 1.32846 1.21227 1.02852 0.91927 0.97763 1.20166 1.02114 0.91192 0.95333 1.19910 0.93814 0.94941 0.99619 1.20983 0.99655 0.91626 1.01308 1.20437 0.94779 0.95249 1.00867 1.20675 0.96141 0.96429 1.02799 1.18119 0.90700 0.83819 1.02885 1.84758 1.90670 1.20637 1.34815 1.20429 0.97449 0.92590 1.00950 1.20693 0.89951 1.02530 1.03198 1.20987 0.95665 0.95792 1.01454 0.92587 0.91052 0.92855 0.92151 0.92439 0.94208 0.92717 0.88988 0.95018 0.91735 0.89613 0.90167 0.91851 0.91280 0.85050 0.91165 0.90642 0.90155 0.73819 0.89785 0.91400 0.90702 0.85635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 9.91 71.98 0.71 -3.09 16 2 C -0.12 -3.92 5.93 30.60 0.18 -3.74 16 3 C -0.11 -4.71 5.54 30.60 0.17 -4.54 16 4 C 0.11 5.46 5.05 86.38 0.44 5.89 16 5 N -0.45 -23.34 2.54 -635.54 -1.61 -24.96 16 6 C -0.36 -18.17 8.73 84.04 0.73 -17.44 16 7 H 0.10 4.68 6.95 -2.91 -0.02 4.66 16 8 C 0.01 0.32 4.95 84.92 0.42 0.74 16 9 N -0.89 -47.59 11.34 21.66 0.25 -47.35 16 10 Si 0.98 39.43 29.61 68.60 2.03 41.46 16 11 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 12 H -0.28 -11.15 7.11 99.48 0.71 -10.45 16 13 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 14 C 0.45 22.72 7.62 87.66 0.67 23.39 16 15 O -0.64 -34.75 15.54 -3.06 -0.05 -34.80 16 16 C -0.10 -4.00 4.31 29.85 0.13 -3.87 16 17 C -0.05 -1.78 4.63 29.85 0.14 -1.64 16 18 C -0.08 -2.51 5.13 -19.85 -0.10 -2.61 16 19 C -0.12 -3.20 9.35 22.26 0.21 -2.99 16 20 C -0.11 -2.71 5.89 -19.77 -0.12 -2.83 16 21 C -0.10 -1.86 9.79 71.24 0.70 -1.16 16 22 C 0.09 2.11 6.65 22.51 0.15 2.26 16 23 O -0.50 -9.28 11.60 -92.48 -1.07 -10.35 16 24 C -0.11 -2.83 5.89 -19.77 -0.12 -2.94 16 25 C -0.11 -2.06 9.79 71.23 0.70 -1.36 16 26 C -0.12 -3.44 9.35 22.26 0.21 -3.23 16 27 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 29 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.09 4.87 5.36 -2.39 -0.01 4.85 16 35 H 0.03 1.67 7.36 -2.39 -0.02 1.65 16 36 H 0.27 13.68 8.32 -92.71 -0.77 12.91 16 37 H 0.09 3.31 7.68 -2.39 -0.02 3.30 16 38 H 0.08 3.35 8.09 -2.39 -0.02 3.33 16 39 H 0.06 2.36 8.02 -2.39 -0.02 2.34 16 40 H 0.07 2.46 8.06 -2.39 -0.02 2.44 16 41 H 0.13 3.28 8.06 -2.91 -0.02 3.26 16 42 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.07 1.18 8.09 -2.39 -0.02 1.16 16 44 H 0.08 1.16 7.53 -2.39 -0.02 1.14 16 45 H 0.40 3.63 9.06 -74.05 -0.67 2.96 16 46 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 47 H 0.07 1.30 8.09 -2.39 -0.02 1.28 16 48 H 0.07 1.38 7.53 -2.39 -0.02 1.36 16 49 H 0.13 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -65.23 400.02 5.01 -60.22 By element: Atomic # 1 Polarization: 34.67 SS G_CDS: 0.26 Total: 34.93 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: 5.22 Total: -19.15 kcal Atomic # 7 Polarization: -70.94 SS G_CDS: -1.37 Total: -72.30 kcal Atomic # 8 Polarization: -44.03 SS G_CDS: -1.12 Total: -45.15 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Total: -65.23 5.01 -60.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182333261.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.596 kcal (2) G-P(sol) polarization free energy of solvation -65.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds