Wall clock time and date at job start Tue Mar 31 2020 12:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46857 * 2 1 4 4 C 1.53001 * 109.47101 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47536 * 180.02562 * 4 3 2 6 6 C 1.36904 * 119.99740 * 264.12056 * 5 4 3 7 7 H 1.08005 * 120.00040 * 135.98932 * 6 5 4 8 8 C 1.39024 * 120.00036 * 315.98869 * 6 5 4 9 9 N 1.31378 * 120.00173 * 347.58384 * 8 6 5 10 10 Si 1.86795 * 119.99882 * 167.59258 * 8 6 5 11 11 H 1.48500 * 109.47506 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47403 * 119.99893 * 10 8 6 13 13 H 1.48500 * 109.47002 * 239.99406 * 10 8 6 14 14 C 1.34770 * 120.00008 * 84.11715 * 5 4 3 15 15 O 1.21624 * 120.00172 * 5.66560 * 14 5 4 16 16 C 1.47435 * 119.99704 * 185.66709 * 14 5 4 17 17 C 1.39763 * 120.19709 * 312.43518 * 16 14 5 18 18 C 1.37774 * 119.89777 * 179.72158 * 17 16 14 19 19 C 1.38562 * 120.31181 * 0.25854 * 18 17 16 20 20 C 1.50700 * 119.80245 * 180.02562 * 19 18 17 21 21 C 1.52997 * 109.46950 * 359.97438 * 20 19 18 22 22 C 1.52996 * 109.47069 * 120.00072 * 20 19 18 23 23 C 1.52998 * 109.46718 * 239.99758 * 20 19 18 24 24 C 1.38079 * 120.39458 * 0.04268 * 19 18 17 25 25 C 1.38678 * 120.09528 * 0.02562 * 24 19 18 26 26 O 1.35660 * 120.15403 * 179.97438 * 25 24 19 27 27 H 1.08999 * 109.47090 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47792 * 300.00219 * 1 2 3 29 29 H 1.09005 * 109.46870 * 60.00214 * 1 2 3 30 30 H 1.08993 * 109.47335 * 239.99874 * 2 1 3 31 31 H 1.09005 * 109.46870 * 119.99786 * 2 1 3 32 32 H 1.09001 * 109.47468 * 60.00005 * 3 2 1 33 33 H 1.08997 * 109.46957 * 299.99712 * 3 2 1 34 34 H 1.09006 * 109.47173 * 59.99744 * 4 3 2 35 35 H 1.09005 * 109.46988 * 300.00007 * 4 3 2 36 36 H 0.96994 * 120.00386 * 179.97438 * 9 8 6 37 37 H 1.07993 * 120.05037 * 359.97438 * 17 16 14 38 38 H 1.08007 * 119.84616 * 180.27590 * 18 17 16 39 39 H 1.09006 * 109.47118 * 60.00255 * 21 20 19 40 40 H 1.09003 * 109.46929 * 179.97438 * 21 20 19 41 41 H 1.08994 * 109.47521 * 300.00063 * 21 20 19 42 42 H 1.08997 * 109.47204 * 59.99502 * 22 20 19 43 43 H 1.08997 * 109.47244 * 180.02562 * 22 20 19 44 44 H 1.09006 * 109.46919 * 299.99696 * 22 20 19 45 45 H 1.09003 * 109.47167 * 60.00513 * 23 20 19 46 46 H 1.09003 * 109.46706 * 180.02562 * 23 20 19 47 47 H 1.08999 * 109.47603 * 300.00024 * 23 20 19 48 48 H 1.08007 * 119.95002 * 179.97438 * 24 19 18 49 49 H 0.96698 * 114.00033 * 90.00330 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.4015 3.4289 -1.1778 7 1 4.0890 4.4438 -1.3749 8 6 5.1522 2.7371 -2.1215 9 7 5.7376 1.6071 -1.7952 10 14 5.3288 3.4144 -3.8534 11 1 4.5786 4.6911 -3.9646 12 1 6.7644 3.6562 -4.1464 13 1 4.7835 2.4339 -4.8263 14 6 4.1697 3.4986 1.1625 15 8 3.9640 2.9306 2.2181 16 6 4.5408 4.9254 1.1532 17 6 5.6201 5.3660 0.3823 18 6 5.9580 6.7017 0.3736 19 6 5.2359 7.6106 1.1302 20 6 5.6152 9.0690 1.1118 21 6 6.8180 9.2715 0.1883 22 6 4.4342 9.8966 0.6008 23 6 5.9786 9.5193 2.5282 24 6 4.1712 7.1880 1.9012 25 6 3.8176 5.8473 1.9233 26 8 2.7720 5.4307 2.6808 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9337 0.9286 -0.8891 35 1 3.9329 0.9289 0.8909 36 1 6.2611 1.1242 -2.4537 37 1 6.1858 4.6612 -0.2089 38 1 6.7895 7.0419 -0.2259 39 1 6.5595 8.9505 -0.8208 40 1 7.0920 10.3264 0.1746 41 1 7.6592 8.6820 0.5527 42 1 3.5775 9.7521 1.2591 43 1 4.7085 10.9514 0.5871 44 1 4.1752 9.5757 -0.4082 45 1 6.8200 8.9297 2.8922 46 1 6.2524 10.5742 2.5149 47 1 5.1219 9.3749 3.1864 48 1 3.6136 7.9026 2.4885 49 1 1.9225 5.4428 2.2192 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192322722.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:33 Heat of formation + Delta-G solvation = -76.681963 kcal Electronic energy + Delta-G solvation = -28002.971270 eV Core-core repulsion = 24315.414892 eV Total energy + Delta-G solvation = -3687.556378 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.93667 -38.37420 -37.19506 -35.23086 -35.02011 -33.92160 -31.50700 -30.24640 -29.49421 -28.05605 -27.23913 -27.09964 -24.98602 -23.85313 -22.33732 -21.65031 -20.47825 -19.51172 -19.15884 -17.82453 -16.83755 -15.97924 -15.57311 -15.42382 -14.75079 -14.59380 -14.43883 -14.24141 -14.09690 -13.75814 -13.66040 -13.34223 -13.09482 -12.73922 -12.48404 -12.37675 -12.23241 -12.03753 -11.85454 -11.69076 -11.58428 -11.39782 -11.39107 -11.20414 -11.06173 -10.90158 -10.81702 -10.60305 -10.52546 -10.50689 -10.34251 -10.23593 -9.92253 -9.73232 -9.10722 -8.49195 -8.22742 -7.98490 -7.42934 -6.39092 -4.16271 1.59841 1.85965 3.06689 3.17460 3.20532 3.78179 4.05727 4.28606 4.59002 4.71786 4.78933 4.91747 4.98355 5.05442 5.37998 5.44751 5.47823 5.53071 5.58162 5.60478 5.64383 5.66702 5.77229 5.86223 5.87233 5.94782 6.05006 6.06669 6.09566 6.11599 6.23896 6.29342 6.32179 6.36429 6.37422 6.40478 6.53769 6.60521 6.71652 6.82251 6.85933 7.00635 7.08161 7.14385 7.32767 7.38024 7.45891 7.98612 8.16972 8.36066 9.03106 9.49083 9.93336 10.62806 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.012207 B = 0.004595 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.212989 B = 6092.509845 C = 7619.144150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.129 4.129 4 C 0.121 3.879 5 N -0.434 5.434 6 C -0.336 4.336 7 H 0.087 0.913 8 C 0.045 3.955 9 N -0.862 5.862 10 Si 0.910 3.090 11 H -0.267 1.267 12 H -0.279 1.279 13 H -0.279 1.279 14 C 0.515 3.485 15 O -0.584 6.584 16 C -0.116 4.116 17 C -0.043 4.043 18 C -0.148 4.148 19 C -0.056 4.056 20 C -0.028 4.028 21 C -0.144 4.144 22 C -0.137 4.137 23 C -0.137 4.137 24 C -0.158 4.158 25 C 0.136 3.864 26 O -0.485 6.485 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.100 0.900 35 H 0.052 0.948 36 H 0.269 0.731 37 H 0.146 0.854 38 H 0.125 0.875 39 H 0.060 0.940 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.056 0.944 48 H 0.121 0.879 49 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.603 10.905 0.424 11.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.167 4.167 4 C -0.002 4.002 5 N -0.152 5.152 6 C -0.464 4.464 7 H 0.104 0.896 8 C -0.161 4.161 9 N -0.498 5.498 10 Si 0.736 3.264 11 H -0.191 1.191 12 H -0.205 1.205 13 H -0.205 1.205 14 C 0.303 3.697 15 O -0.468 6.468 16 C -0.120 4.120 17 C -0.061 4.061 18 C -0.166 4.166 19 C -0.056 4.056 20 C -0.028 4.028 21 C -0.201 4.201 22 C -0.194 4.194 23 C -0.195 4.195 24 C -0.177 4.177 25 C 0.090 3.910 26 O -0.294 6.294 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.118 0.882 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.164 0.836 38 H 0.143 0.857 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.139 0.861 49 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -2.156 10.358 1.268 10.656 hybrid contribution -0.254 0.257 -1.394 1.440 sum -2.410 10.615 -0.126 10.886 Atomic orbital electron populations 1.21756 0.96648 1.00693 1.01437 1.21426 0.94953 0.97715 1.01647 1.21932 0.98019 0.95567 1.01209 1.21328 0.90770 0.84907 1.03188 1.43276 1.55441 1.11732 1.04797 1.19406 1.32738 1.00222 0.94015 0.89563 1.25451 0.94394 0.96237 1.00027 1.69878 1.29476 1.15746 1.34721 0.86130 0.78287 0.79347 0.82625 1.19074 1.20521 1.20494 1.18227 0.80791 0.86332 0.84311 1.90658 1.55125 1.69781 1.31252 1.20471 0.98625 0.95053 0.97808 1.21558 0.94843 0.95466 0.94257 1.21107 1.01132 0.93058 1.01345 1.19616 0.95150 0.94401 0.96460 1.19472 0.95783 0.91493 0.96060 1.21961 0.97341 1.01245 0.99517 1.21881 0.97281 0.98847 1.01438 1.21886 1.01815 1.00534 0.95239 1.20938 1.00172 0.94326 1.02248 1.18451 0.90612 0.90442 0.91470 1.84803 1.17149 1.88326 1.39106 0.93415 0.93077 0.93083 0.92247 0.92355 0.92943 0.92421 0.88194 0.92935 0.92019 0.83640 0.85734 0.92055 0.92735 0.92121 0.92509 0.92672 0.92384 0.92424 0.92670 0.92463 0.86115 0.76337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.91 37.16 0.37 -1.71 16 2 C -0.12 -2.00 5.93 -26.73 -0.16 -2.16 16 3 C -0.13 -2.59 5.50 -26.73 -0.15 -2.73 16 4 C 0.12 2.88 4.88 -4.04 -0.02 2.86 16 5 N -0.43 -10.85 2.49 -116.03 -0.29 -11.14 16 6 C -0.34 -8.20 6.54 -15.00 -0.10 -8.30 16 7 H 0.09 2.08 6.92 -52.48 -0.36 1.72 16 8 C 0.05 1.09 5.07 -17.45 -0.09 1.01 16 9 N -0.86 -22.16 11.48 55.50 0.64 -21.52 16 10 Si 0.91 18.85 29.57 -169.99 -5.03 13.82 16 11 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 12 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 13 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 14 C 0.51 13.05 6.92 -12.52 -0.09 12.96 16 15 O -0.58 -16.35 16.10 -5.72 -0.09 -16.44 16 16 C -0.12 -2.56 5.15 -104.84 -0.54 -3.10 16 17 C -0.04 -0.86 7.99 -39.18 -0.31 -1.17 16 18 C -0.15 -2.46 8.95 -39.63 -0.35 -2.81 16 19 C -0.06 -0.84 4.77 -104.56 -0.50 -1.34 16 20 C -0.03 -0.33 0.85 -155.67 -0.13 -0.46 16 21 C -0.14 -1.51 7.13 37.16 0.26 -1.25 16 22 C -0.14 -1.44 8.29 37.16 0.31 -1.13 16 23 C -0.14 -1.47 8.28 37.16 0.31 -1.16 16 24 C -0.16 -2.57 8.62 -39.48 -0.34 -2.91 16 25 C 0.14 2.65 6.69 -38.68 -0.26 2.39 16 26 O -0.49 -9.24 12.50 -29.66 -0.37 -9.61 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.10 2.49 5.78 -51.93 -0.30 2.19 16 35 H 0.05 1.32 7.53 -51.93 -0.39 0.93 16 36 H 0.27 6.54 8.31 -40.82 -0.34 6.21 16 37 H 0.15 3.17 6.76 -52.49 -0.36 2.81 16 38 H 0.12 1.78 5.86 -52.48 -0.31 1.47 16 39 H 0.06 0.66 7.50 -51.93 -0.39 0.27 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.65 7.50 -51.93 -0.39 0.26 16 42 H 0.06 0.59 7.37 -51.93 -0.38 0.20 16 43 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.62 7.37 -51.93 -0.38 0.23 16 48 H 0.12 1.70 7.06 -52.48 -0.37 1.33 16 49 H 0.38 5.56 9.06 45.56 0.41 5.97 16 LS Contribution 389.66 15.07 5.87 5.87 Total: -1.00 -29.91 389.66 -8.48 -38.39 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -7.43 Total: 11.62 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -1.79 Total: -11.00 kcal Atomic # 7 Polarization: -33.00 SS G_CDS: 0.35 Total: -32.65 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.46 Total: -26.06 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.91 -8.48 -38.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192322722.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.291 kcal (2) G-P(sol) polarization free energy of solvation -29.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds