Wall clock time and date at job start Tue Mar 31 2020 12:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46857 * 2 1 4 4 C 1.53001 * 109.47101 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47536 * 180.02562 * 4 3 2 6 6 C 1.36904 * 119.99740 * 264.12056 * 5 4 3 7 7 H 1.08005 * 120.00040 * 135.98932 * 6 5 4 8 8 C 1.39024 * 120.00036 * 315.98869 * 6 5 4 9 9 N 1.31378 * 120.00173 * 347.58384 * 8 6 5 10 10 Si 1.86795 * 119.99882 * 167.59258 * 8 6 5 11 11 H 1.48500 * 109.47506 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47403 * 119.99893 * 10 8 6 13 13 H 1.48500 * 109.47002 * 239.99406 * 10 8 6 14 14 C 1.34770 * 120.00008 * 84.11715 * 5 4 3 15 15 O 1.21624 * 120.00172 * 5.66560 * 14 5 4 16 16 C 1.47435 * 119.99704 * 185.66709 * 14 5 4 17 17 C 1.39763 * 120.19709 * 312.43518 * 16 14 5 18 18 C 1.37774 * 119.89777 * 179.72158 * 17 16 14 19 19 C 1.38562 * 120.31181 * 0.25854 * 18 17 16 20 20 C 1.50700 * 119.80245 * 180.02562 * 19 18 17 21 21 C 1.52997 * 109.46950 * 359.97438 * 20 19 18 22 22 C 1.52996 * 109.47069 * 120.00072 * 20 19 18 23 23 C 1.52998 * 109.46718 * 239.99758 * 20 19 18 24 24 C 1.38079 * 120.39458 * 0.04268 * 19 18 17 25 25 C 1.38678 * 120.09528 * 0.02562 * 24 19 18 26 26 O 1.35660 * 120.15403 * 179.97438 * 25 24 19 27 27 H 1.08999 * 109.47090 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47792 * 300.00219 * 1 2 3 29 29 H 1.09005 * 109.46870 * 60.00214 * 1 2 3 30 30 H 1.08993 * 109.47335 * 239.99874 * 2 1 3 31 31 H 1.09005 * 109.46870 * 119.99786 * 2 1 3 32 32 H 1.09001 * 109.47468 * 60.00005 * 3 2 1 33 33 H 1.08997 * 109.46957 * 299.99712 * 3 2 1 34 34 H 1.09006 * 109.47173 * 59.99744 * 4 3 2 35 35 H 1.09005 * 109.46988 * 300.00007 * 4 3 2 36 36 H 0.96994 * 120.00386 * 179.97438 * 9 8 6 37 37 H 1.07993 * 120.05037 * 359.97438 * 17 16 14 38 38 H 1.08007 * 119.84616 * 180.27590 * 18 17 16 39 39 H 1.09006 * 109.47118 * 60.00255 * 21 20 19 40 40 H 1.09003 * 109.46929 * 179.97438 * 21 20 19 41 41 H 1.08994 * 109.47521 * 300.00063 * 21 20 19 42 42 H 1.08997 * 109.47204 * 59.99502 * 22 20 19 43 43 H 1.08997 * 109.47244 * 180.02562 * 22 20 19 44 44 H 1.09006 * 109.46919 * 299.99696 * 22 20 19 45 45 H 1.09003 * 109.47167 * 60.00513 * 23 20 19 46 46 H 1.09003 * 109.46706 * 180.02562 * 23 20 19 47 47 H 1.08999 * 109.47603 * 300.00024 * 23 20 19 48 48 H 1.08007 * 119.95002 * 179.97438 * 24 19 18 49 49 H 0.96698 * 114.00033 * 90.00330 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.4015 3.4289 -1.1778 7 1 4.0890 4.4438 -1.3749 8 6 5.1522 2.7371 -2.1215 9 7 5.7376 1.6071 -1.7952 10 14 5.3288 3.4144 -3.8534 11 1 4.5786 4.6911 -3.9646 12 1 6.7644 3.6562 -4.1464 13 1 4.7835 2.4339 -4.8263 14 6 4.1697 3.4986 1.1625 15 8 3.9640 2.9306 2.2181 16 6 4.5408 4.9254 1.1532 17 6 5.6201 5.3660 0.3823 18 6 5.9580 6.7017 0.3736 19 6 5.2359 7.6106 1.1302 20 6 5.6152 9.0690 1.1118 21 6 6.8180 9.2715 0.1883 22 6 4.4342 9.8966 0.6008 23 6 5.9786 9.5193 2.5282 24 6 4.1712 7.1880 1.9012 25 6 3.8176 5.8473 1.9233 26 8 2.7720 5.4307 2.6808 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9337 0.9286 -0.8891 35 1 3.9329 0.9289 0.8909 36 1 6.2611 1.1242 -2.4537 37 1 6.1858 4.6612 -0.2089 38 1 6.7895 7.0419 -0.2259 39 1 6.5595 8.9505 -0.8208 40 1 7.0920 10.3264 0.1746 41 1 7.6592 8.6820 0.5527 42 1 3.5775 9.7521 1.2591 43 1 4.7085 10.9514 0.5871 44 1 4.1752 9.5757 -0.4082 45 1 6.8200 8.9297 2.8922 46 1 6.2524 10.5742 2.5149 47 1 5.1219 9.3749 3.1864 48 1 3.6136 7.9026 2.4885 49 1 1.9225 5.4428 2.2192 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192322722.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:32 Heat of formation + Delta-G solvation = -92.647920 kcal Electronic energy + Delta-G solvation = -28003.663605 eV Core-core repulsion = 24315.414892 eV Total energy + Delta-G solvation = -3688.248714 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -41.44039 -40.01427 -38.57504 -37.04577 -36.39349 -35.52128 -33.41642 -31.64544 -30.90008 -29.60045 -28.03487 -28.02502 -26.89051 -25.35347 -23.81684 -23.06935 -22.01250 -21.22872 -20.49206 -19.51172 -18.25774 -17.78843 -17.02555 -16.90319 -16.37705 -16.12880 -16.09900 -15.63594 -15.43479 -15.07450 -14.94879 -14.68299 -14.43812 -14.22467 -13.90129 -13.75474 -13.58617 -13.36878 -13.11394 -12.95305 -12.93191 -12.79705 -12.66804 -12.58349 -12.46432 -12.16547 -12.10746 -12.04186 -11.98373 -11.82223 -11.73348 -11.52791 -11.45838 -11.26790 -11.00904 -10.40018 -9.67675 -9.48263 -9.36014 -8.28822 -6.12571 0.12506 0.43492 1.40941 1.46032 1.58168 2.04061 2.29806 2.73065 2.93189 3.10644 3.28717 3.71488 3.90085 4.03258 4.09237 4.17787 4.21967 4.26008 4.31518 4.39080 4.44335 4.54087 4.61367 4.81111 4.83548 4.85109 4.85828 4.90322 4.97189 4.98255 5.02507 5.06979 5.09545 5.10238 5.15577 5.20735 5.28961 5.34258 5.38043 5.40478 5.44444 5.51130 5.51536 5.54163 5.60257 5.70784 5.96205 6.06044 6.42186 6.82108 7.09897 7.54394 7.99942 8.74691 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.012207 B = 0.004595 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.212989 B = 6092.509845 C = 7619.144150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.114 4.114 4 C 0.123 3.877 5 N -0.442 5.442 6 C -0.341 4.341 7 H 0.089 0.911 8 C 0.007 3.993 9 N -0.898 5.898 10 Si 0.977 3.023 11 H -0.257 1.257 12 H -0.276 1.276 13 H -0.278 1.278 14 C 0.503 3.497 15 O -0.626 6.626 16 C -0.156 4.156 17 C -0.054 4.054 18 C -0.143 4.143 19 C -0.039 4.039 20 C -0.028 4.028 21 C -0.146 4.146 22 C -0.136 4.136 23 C -0.137 4.137 24 C -0.149 4.149 25 C 0.128 3.872 26 O -0.500 6.500 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.038 0.962 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.025 0.975 36 H 0.272 0.728 37 H 0.120 0.880 38 H 0.150 0.850 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.078 0.922 44 H 0.051 0.949 45 H 0.048 0.952 46 H 0.079 0.921 47 H 0.056 0.944 48 H 0.149 0.851 49 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.035 14.024 -0.682 14.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.152 4.152 4 C 0.000 4.000 5 N -0.159 5.159 6 C -0.468 4.468 7 H 0.106 0.894 8 C -0.196 4.196 9 N -0.535 5.535 10 Si 0.801 3.199 11 H -0.180 1.180 12 H -0.201 1.201 13 H -0.203 1.203 14 C 0.293 3.707 15 O -0.514 6.514 16 C -0.159 4.159 17 C -0.073 4.073 18 C -0.161 4.161 19 C -0.039 4.039 20 C -0.028 4.028 21 C -0.203 4.203 22 C -0.193 4.193 23 C -0.194 4.194 24 C -0.167 4.167 25 C 0.082 3.918 26 O -0.312 6.312 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.043 0.957 36 H 0.082 0.918 37 H 0.137 0.863 38 H 0.167 0.833 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.096 0.904 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.098 0.902 47 H 0.075 0.925 48 H 0.167 0.833 49 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -2.605 13.486 0.146 13.736 hybrid contribution -0.073 -0.653 -0.991 1.189 sum -2.678 12.832 -0.845 13.136 Atomic orbital electron populations 1.21704 0.93941 1.02404 1.01834 1.21411 0.97271 0.95039 1.01685 1.21780 0.95142 0.97953 1.00369 1.21296 0.93218 0.84481 1.01025 1.43533 1.55189 1.11974 1.05202 1.19558 1.33035 1.00425 0.93815 0.89379 1.26239 0.93614 0.96257 1.03515 1.69993 1.30297 1.17098 1.36078 0.85105 0.78308 0.78961 0.77569 1.18006 1.20144 1.20314 1.18843 0.80145 0.87961 0.83718 1.90596 1.57218 1.71120 1.32460 1.20386 1.00949 0.93570 1.01031 1.21356 0.94708 0.96732 0.94542 1.21344 1.01730 0.91552 1.01451 1.20099 0.93368 0.96404 0.94065 1.19596 0.96992 0.88803 0.97370 1.21988 0.96564 1.02789 0.98920 1.21886 0.96600 0.99908 1.00947 1.21897 1.01486 1.01923 0.94135 1.21185 1.00352 0.93124 1.02069 1.18660 0.90657 0.91348 0.91090 1.84742 1.18076 1.88650 1.39696 0.91051 0.93000 0.92389 0.91873 0.92708 0.94339 0.92399 0.89450 0.95689 0.91823 0.86253 0.83262 0.92299 0.90457 0.92438 0.92347 0.90355 0.93030 0.93296 0.90235 0.92531 0.83339 0.74476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 9.91 71.98 0.71 -3.07 16 2 C -0.12 -3.92 5.93 30.59 0.18 -3.74 16 3 C -0.11 -4.77 5.50 30.59 0.17 -4.60 16 4 C 0.12 6.22 4.88 86.38 0.42 6.64 16 5 N -0.44 -23.32 2.49 -639.24 -1.59 -24.91 16 6 C -0.34 -17.23 6.54 84.09 0.55 -16.68 16 7 H 0.09 4.36 6.92 -2.91 -0.02 4.34 16 8 C 0.01 0.33 5.07 84.95 0.43 0.76 16 9 N -0.90 -47.76 11.48 21.68 0.25 -47.51 16 10 Si 0.98 38.72 29.57 68.60 2.03 40.75 16 11 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 12 H -0.28 -10.74 7.11 99.48 0.71 -10.03 16 13 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 14 C 0.50 27.05 6.92 86.67 0.60 27.65 16 15 O -0.63 -37.39 16.10 6.39 0.10 -37.29 16 16 C -0.16 -7.15 5.15 -20.01 -0.10 -7.25 16 17 C -0.05 -2.26 7.99 22.53 0.18 -2.08 16 18 C -0.14 -4.59 8.95 22.24 0.20 -4.39 16 19 C -0.04 -1.09 4.77 -19.82 -0.09 -1.18 16 20 C -0.03 -0.54 0.85 -52.93 -0.05 -0.59 16 21 C -0.15 -2.53 7.13 71.98 0.51 -2.01 16 22 C -0.14 -2.30 8.29 71.98 0.60 -1.70 16 23 C -0.14 -2.42 8.28 71.98 0.60 -1.82 16 24 C -0.15 -4.57 8.62 22.34 0.19 -4.38 16 25 C 0.13 5.04 6.69 22.86 0.15 5.19 16 26 O -0.50 -19.40 12.50 -79.27 -0.99 -20.39 16 27 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.05 1.87 8.14 -2.38 -0.02 1.86 16 32 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.09 4.60 5.78 -2.38 -0.01 4.59 16 35 H 0.02 1.35 7.53 -2.38 -0.02 1.34 16 36 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 37 H 0.12 5.49 6.76 -2.91 -0.02 5.47 16 38 H 0.15 3.98 5.86 -2.91 -0.02 3.96 16 39 H 0.06 1.06 7.50 -2.38 -0.02 1.04 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.06 1.04 7.50 -2.39 -0.02 1.02 16 42 H 0.06 0.97 7.37 -2.39 -0.02 0.95 16 43 H 0.08 0.99 8.14 -2.39 -0.02 0.98 16 44 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 45 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.06 1.01 7.37 -2.39 -0.02 0.99 16 48 H 0.15 3.72 7.06 -2.91 -0.02 3.70 16 49 H 0.40 11.84 9.06 -74.06 -0.67 11.16 16 Total: -1.00 -68.51 389.66 5.32 -63.19 By element: Atomic # 1 Polarization: 39.14 SS G_CDS: 0.27 Total: 39.40 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: 5.25 Total: -13.24 kcal Atomic # 7 Polarization: -71.08 SS G_CDS: -1.34 Total: -72.42 kcal Atomic # 8 Polarization: -56.79 SS G_CDS: -0.89 Total: -57.68 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Total: -68.51 5.32 -63.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192322722.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.460 kcal (2) G-P(sol) polarization free energy of solvation -68.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds