Wall clock time and date at job start Tue Mar 31 2020 12:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47444 * 2 1 4 4 O 1.42902 * 109.47582 * 239.99738 * 2 1 3 5 5 C 1.53002 * 109.47004 * 120.00058 * 2 1 3 6 6 C 1.53002 * 109.47287 * 59.99928 * 5 2 1 7 7 C 1.52999 * 109.46776 * 299.99843 * 5 2 1 8 8 C 1.53000 * 109.47004 * 179.97438 * 5 2 1 9 9 N 1.46503 * 109.46980 * 179.97438 * 8 5 2 10 10 C 1.34779 * 120.00328 * 180.02562 * 9 8 5 11 11 O 1.21283 * 119.99419 * 359.97438 * 10 9 8 12 12 C 1.50695 * 120.00080 * 180.02562 * 10 9 8 13 13 H 1.09001 * 109.47295 * 299.99387 * 12 10 9 14 14 C 1.50696 * 109.47530 * 59.99483 * 12 10 9 15 15 H 1.07997 * 120.00260 * 235.33651 * 14 12 10 16 16 C 1.37879 * 119.99977 * 55.33425 * 14 12 10 17 17 N 1.31516 * 119.99735 * 1.97120 * 16 14 12 18 18 Si 1.86800 * 120.00111 * 181.96775 * 16 14 12 19 19 H 1.48495 * 109.47133 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46977 * 120.00228 * 18 16 14 21 21 H 1.48496 * 109.47065 * 239.99944 * 18 16 14 22 22 C 1.50707 * 109.46942 * 179.97438 * 12 10 9 23 23 C 1.38224 * 120.00104 * 47.22099 * 22 12 10 24 24 C 1.38237 * 120.00255 * 180.02562 * 23 22 12 25 25 C 1.38238 * 119.99745 * 359.95072 * 24 23 22 26 26 C 1.38236 * 119.99912 * 0.02562 * 25 24 23 27 27 C 1.38232 * 119.99717 * 227.19961 * 22 12 10 28 28 H 1.08991 * 109.46999 * 300.00561 * 1 2 3 29 29 H 1.08999 * 109.46414 * 59.99872 * 1 2 3 30 30 H 1.09000 * 109.47119 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46672 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.46769 * 299.99759 * 3 2 1 33 33 H 1.08990 * 109.46742 * 59.99648 * 3 2 1 34 34 H 0.96705 * 113.99846 * 300.00471 * 4 2 1 35 35 H 1.08994 * 109.46988 * 180.02562 * 6 5 2 36 36 H 1.08997 * 109.46827 * 299.99908 * 6 5 2 37 37 H 1.09000 * 109.46791 * 60.00202 * 6 5 2 38 38 H 1.09000 * 109.47565 * 299.99962 * 7 5 2 39 39 H 1.08997 * 109.47448 * 60.00024 * 7 5 2 40 40 H 1.09003 * 109.46965 * 179.97438 * 7 5 2 41 41 H 1.09000 * 109.47119 * 60.00172 * 8 5 2 42 42 H 1.09001 * 109.47533 * 299.99479 * 8 5 2 43 43 H 0.97004 * 120.00070 * 359.97438 * 9 8 5 44 44 H 0.97003 * 120.00319 * 179.97438 * 17 16 14 45 45 H 1.08000 * 120.00315 * 359.97438 * 23 22 12 46 46 H 1.07994 * 120.00683 * 179.97438 * 24 23 22 47 47 H 1.08001 * 120.00281 * 179.72897 * 25 24 23 48 48 H 1.07996 * 120.00326 * 179.97438 * 26 25 24 49 49 H 1.08001 * 120.00068 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7213 1.2493 6 6 1.5300 -2.1638 1.2493 7 6 1.5300 0.0000 2.4984 8 6 3.5700 -0.7218 1.2489 9 7 4.0583 -1.4119 2.4454 10 6 5.3834 -1.5350 2.6589 11 8 6.1715 -1.0749 1.8601 12 6 5.8856 -2.2454 3.8893 13 1 5.5222 -1.7315 4.7793 14 6 5.3833 -3.6662 3.8894 15 1 4.8259 -4.0418 4.7347 16 6 5.6352 -4.4865 2.8103 17 7 6.3470 -4.0414 1.7979 18 14 4.9657 -6.2303 2.7862 19 1 4.2026 -6.4848 4.0344 20 1 4.0687 -6.3999 1.6148 21 1 6.0930 -7.1920 2.6897 22 6 7.3926 -2.2459 3.8891 23 6 8.0841 -1.0787 3.6241 24 6 9.4665 -1.0793 3.6234 25 6 10.1573 -2.2469 3.8887 26 6 9.4658 -3.4140 4.1543 27 6 8.0834 -3.4135 4.1544 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.7211 -1.5953 -1.2328 35 1 1.8929 -2.6774 2.1395 36 1 0.4400 -2.1637 1.2493 37 1 1.8934 -2.6776 0.3593 38 1 1.8933 1.0277 2.4985 39 1 0.4400 0.0001 2.4984 40 1 1.8929 -0.5140 3.3885 41 1 3.9337 0.3057 1.2487 42 1 3.9330 -1.2360 0.3590 43 1 3.4279 -1.7797 3.0845 44 1 6.5246 -4.6186 1.0388 45 1 7.5444 -0.1665 3.4167 46 1 10.0068 -0.1675 3.4159 47 1 11.2373 -2.2484 3.8839 48 1 10.0054 -4.3263 4.3612 49 1 7.5431 -4.3252 4.3623 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362691101.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:32 Heat of formation + Delta-G solvation = -73.503562 kcal Electronic energy + Delta-G solvation = -28650.488674 eV Core-core repulsion = 24963.070122 eV Total energy + Delta-G solvation = -3687.418552 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.91573 -38.70256 -37.25184 -35.01513 -33.56243 -32.66499 -30.79240 -30.56723 -29.62790 -28.31109 -27.34984 -26.78223 -25.25300 -23.76915 -22.14983 -21.21603 -20.39916 -19.19801 -18.65935 -17.09193 -16.36173 -15.73193 -15.39467 -15.14029 -14.89494 -14.83385 -14.36108 -14.30301 -13.98405 -13.57430 -13.52169 -13.11249 -12.76654 -12.51752 -12.30581 -12.26110 -12.14673 -12.01170 -11.91872 -11.87651 -11.83164 -11.56821 -11.26273 -11.13772 -11.04695 -10.96499 -10.75032 -10.62351 -10.39269 -10.16313 -10.01309 -9.68749 -9.60921 -9.31782 -8.68618 -8.22677 -7.84792 -7.64221 -7.34969 -6.10567 -4.26992 2.59378 2.65846 3.18403 3.29327 3.30114 4.13901 4.23544 4.34167 4.48249 4.70296 4.76657 4.94232 5.08662 5.10861 5.17525 5.20007 5.34132 5.55490 5.70288 5.72284 5.83184 5.85883 5.88477 5.89541 5.92763 5.97654 6.01383 6.07354 6.09802 6.14807 6.28479 6.39628 6.42194 6.50173 6.58166 6.68182 6.72514 6.86768 6.96372 7.18086 7.26116 7.58587 7.64502 7.69308 7.71503 7.73592 7.84104 8.21120 8.31792 8.66833 8.88075 9.39281 9.79905 10.89597 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014440 B = 0.004538 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.634959 B = 6168.821607 C = 7374.912484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.140 3.860 3 C -0.145 4.145 4 O -0.557 6.557 5 C -0.099 4.099 6 C -0.149 4.149 7 C -0.144 4.144 8 C 0.143 3.857 9 N -0.734 5.734 10 C 0.549 3.451 11 O -0.548 6.548 12 C 0.055 3.945 13 H 0.054 0.946 14 C -0.540 4.540 15 H 0.066 0.934 16 C 0.075 3.925 17 N -0.839 5.839 18 Si 0.883 3.117 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.282 1.282 22 C -0.013 4.013 23 C -0.100 4.100 24 C -0.145 4.145 25 C -0.145 4.145 26 C -0.148 4.148 27 C -0.065 4.065 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.373 0.627 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.054 0.946 42 H 0.062 0.938 43 H 0.392 0.608 44 H 0.264 0.736 45 H 0.106 0.894 46 H 0.100 0.900 47 H 0.099 0.901 48 H 0.101 0.899 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.975 6.231 0.721 11.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.099 3.901 3 C -0.202 4.202 4 O -0.363 6.363 5 C -0.099 4.099 6 C -0.206 4.206 7 C -0.201 4.201 8 C 0.018 3.982 9 N -0.388 5.388 10 C 0.338 3.662 11 O -0.425 6.425 12 C 0.034 3.966 13 H 0.072 0.928 14 C -0.578 4.578 15 H 0.084 0.916 16 C -0.133 4.133 17 N -0.471 5.471 18 Si 0.711 3.289 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.208 1.208 22 C -0.014 4.014 23 C -0.118 4.118 24 C -0.163 4.163 25 C -0.164 4.164 26 C -0.167 4.167 27 C -0.083 4.083 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.221 0.779 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.227 0.773 44 H 0.074 0.926 45 H 0.125 0.875 46 H 0.118 0.882 47 H 0.117 0.883 48 H 0.119 0.881 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.025 7.105 -0.182 11.487 hybrid contribution -0.851 -1.944 -0.061 2.123 sum -9.876 5.161 -0.243 11.146 Atomic orbital electron populations 1.22581 0.96121 1.02513 1.02505 1.21074 0.92069 0.92691 0.84225 1.21877 1.02733 0.93568 1.01987 1.86564 1.77395 1.28845 1.43522 1.21386 0.96376 0.96285 0.95885 1.21958 1.00175 0.95197 1.03307 1.21976 1.00533 1.00537 0.97073 1.21036 0.90396 0.96917 0.89836 1.45852 1.07948 1.60486 1.24537 1.20946 0.80711 0.76024 0.88502 1.90539 1.55183 1.48994 1.47757 1.17890 0.89956 0.96905 0.91833 0.92772 1.20706 1.38085 0.94580 1.04390 0.91614 1.25042 0.94411 0.98188 0.95641 1.70090 1.34545 1.35713 1.06753 0.86667 0.79066 0.85121 0.78096 1.19566 1.21005 1.20844 1.19816 0.95874 0.91828 0.93860 1.20969 0.93441 0.98462 0.98939 1.20818 0.94636 0.97239 1.03590 1.20764 0.98123 0.93713 1.03758 1.20984 0.95082 0.96943 1.03651 1.21139 0.92314 0.98645 0.96231 0.91331 0.92172 0.92066 0.91201 0.92280 0.91009 0.77853 0.91216 0.92613 0.92500 0.92181 0.92495 0.91915 0.92806 0.91935 0.77315 0.92616 0.87543 0.88156 0.88266 0.88111 0.85501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 8.11 37.16 0.30 -1.38 16 2 C 0.14 1.65 0.61 -90.61 -0.06 1.60 16 3 C -0.14 -1.68 8.14 37.16 0.30 -1.37 16 4 O -0.56 -7.56 12.26 -35.23 -0.43 -7.99 16 5 C -0.10 -1.25 0.16 -154.51 -0.03 -1.28 16 6 C -0.15 -1.87 7.64 37.16 0.28 -1.59 16 7 C -0.14 -1.58 7.60 37.16 0.28 -1.30 16 8 C 0.14 2.48 4.07 -4.04 -0.02 2.46 16 9 N -0.73 -14.21 4.86 -60.29 -0.29 -14.50 16 10 C 0.55 12.94 5.45 -10.99 -0.06 12.88 16 11 O -0.55 -14.78 13.95 5.55 0.08 -14.71 16 12 C 0.06 1.30 2.78 -94.08 -0.26 1.04 16 13 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 14 C -0.54 -13.03 7.12 -34.44 -0.25 -13.27 16 15 H 0.07 1.55 7.81 -52.49 -0.41 1.14 16 16 C 0.08 1.89 3.99 -17.82 -0.07 1.81 16 17 N -0.84 -22.88 10.88 55.43 0.60 -22.28 16 18 Si 0.88 19.66 29.54 -169.99 -5.02 14.64 16 19 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 C -0.01 -0.31 4.52 -104.63 -0.47 -0.78 16 23 C -0.10 -2.30 8.21 -39.59 -0.33 -2.63 16 24 C -0.14 -3.03 10.05 -39.58 -0.40 -3.43 16 25 C -0.15 -2.94 10.05 -39.58 -0.40 -3.34 16 26 C -0.15 -3.16 10.05 -39.58 -0.40 -3.56 16 27 C -0.07 -1.54 8.20 -39.58 -0.32 -1.87 16 28 H 0.07 0.57 6.43 -51.93 -0.33 0.24 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.54 6.43 -51.93 -0.33 0.20 16 31 H 0.07 0.94 6.43 -51.93 -0.33 0.60 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.70 6.43 -51.93 -0.33 0.37 16 34 H 0.37 4.17 7.33 45.56 0.33 4.51 16 35 H 0.07 0.98 6.86 -51.93 -0.36 0.62 16 36 H 0.05 0.57 6.43 -51.93 -0.33 0.24 16 37 H 0.06 0.75 6.78 -51.93 -0.35 0.40 16 38 H 0.06 0.64 6.43 -51.93 -0.33 0.31 16 39 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 40 H 0.06 0.72 6.86 -51.93 -0.36 0.37 16 41 H 0.05 0.97 6.43 -51.93 -0.33 0.63 16 42 H 0.06 1.30 7.68 -51.93 -0.40 0.90 16 43 H 0.39 6.92 6.05 -40.82 -0.25 6.67 16 44 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.11 2.44 7.01 -52.49 -0.37 2.07 16 46 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 47 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 48 H 0.10 1.89 8.06 -52.49 -0.42 1.46 16 49 H 0.13 3.09 6.02 -52.49 -0.32 2.77 16 LS Contribution 370.30 15.07 5.58 5.58 Total: -1.00 -30.34 370.30 -8.18 -38.52 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: -6.81 Total: 16.75 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -1.88 Total: -16.00 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.31 Total: -36.78 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.35 Total: -22.70 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.34 -8.18 -38.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362691101.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.985 kcal (2) G-P(sol) polarization free energy of solvation -30.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds