Wall clock time and date at job start Tue Mar 31 2020 12:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47444 * 2 1 4 4 O 1.42902 * 109.47582 * 239.99738 * 2 1 3 5 5 C 1.53002 * 109.47004 * 120.00058 * 2 1 3 6 6 C 1.53002 * 109.47287 * 59.99928 * 5 2 1 7 7 C 1.52999 * 109.46776 * 299.99843 * 5 2 1 8 8 C 1.53000 * 109.47004 * 179.97438 * 5 2 1 9 9 N 1.46503 * 109.46980 * 179.97438 * 8 5 2 10 10 C 1.34779 * 120.00328 * 180.02562 * 9 8 5 11 11 O 1.21283 * 119.99419 * 359.97438 * 10 9 8 12 12 C 1.50695 * 120.00080 * 180.02562 * 10 9 8 13 13 H 1.09001 * 109.47295 * 299.99387 * 12 10 9 14 14 C 1.50696 * 109.47530 * 59.99483 * 12 10 9 15 15 H 1.07997 * 120.00260 * 235.33651 * 14 12 10 16 16 C 1.37879 * 119.99977 * 55.33425 * 14 12 10 17 17 N 1.31516 * 119.99735 * 1.97120 * 16 14 12 18 18 Si 1.86800 * 120.00111 * 181.96775 * 16 14 12 19 19 H 1.48495 * 109.47133 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46977 * 120.00228 * 18 16 14 21 21 H 1.48496 * 109.47065 * 239.99944 * 18 16 14 22 22 C 1.50707 * 109.46942 * 179.97438 * 12 10 9 23 23 C 1.38224 * 120.00104 * 47.22099 * 22 12 10 24 24 C 1.38237 * 120.00255 * 180.02562 * 23 22 12 25 25 C 1.38238 * 119.99745 * 359.95072 * 24 23 22 26 26 C 1.38236 * 119.99912 * 0.02562 * 25 24 23 27 27 C 1.38232 * 119.99717 * 227.19961 * 22 12 10 28 28 H 1.08991 * 109.46999 * 300.00561 * 1 2 3 29 29 H 1.08999 * 109.46414 * 59.99872 * 1 2 3 30 30 H 1.09000 * 109.47119 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46672 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.46769 * 299.99759 * 3 2 1 33 33 H 1.08990 * 109.46742 * 59.99648 * 3 2 1 34 34 H 0.96705 * 113.99846 * 300.00471 * 4 2 1 35 35 H 1.08994 * 109.46988 * 180.02562 * 6 5 2 36 36 H 1.08997 * 109.46827 * 299.99908 * 6 5 2 37 37 H 1.09000 * 109.46791 * 60.00202 * 6 5 2 38 38 H 1.09000 * 109.47565 * 299.99962 * 7 5 2 39 39 H 1.08997 * 109.47448 * 60.00024 * 7 5 2 40 40 H 1.09003 * 109.46965 * 179.97438 * 7 5 2 41 41 H 1.09000 * 109.47119 * 60.00172 * 8 5 2 42 42 H 1.09001 * 109.47533 * 299.99479 * 8 5 2 43 43 H 0.97004 * 120.00070 * 359.97438 * 9 8 5 44 44 H 0.97003 * 120.00319 * 179.97438 * 17 16 14 45 45 H 1.08000 * 120.00315 * 359.97438 * 23 22 12 46 46 H 1.07994 * 120.00683 * 179.97438 * 24 23 22 47 47 H 1.08001 * 120.00281 * 179.72897 * 25 24 23 48 48 H 1.07996 * 120.00326 * 179.97438 * 26 25 24 49 49 H 1.08001 * 120.00068 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7213 1.2493 6 6 1.5300 -2.1638 1.2493 7 6 1.5300 0.0000 2.4984 8 6 3.5700 -0.7218 1.2489 9 7 4.0583 -1.4119 2.4454 10 6 5.3834 -1.5350 2.6589 11 8 6.1715 -1.0749 1.8601 12 6 5.8856 -2.2454 3.8893 13 1 5.5222 -1.7315 4.7793 14 6 5.3833 -3.6662 3.8894 15 1 4.8259 -4.0418 4.7347 16 6 5.6352 -4.4865 2.8103 17 7 6.3470 -4.0414 1.7979 18 14 4.9657 -6.2303 2.7862 19 1 4.2026 -6.4848 4.0344 20 1 4.0687 -6.3999 1.6148 21 1 6.0930 -7.1920 2.6897 22 6 7.3926 -2.2459 3.8891 23 6 8.0841 -1.0787 3.6241 24 6 9.4665 -1.0793 3.6234 25 6 10.1573 -2.2469 3.8887 26 6 9.4658 -3.4140 4.1543 27 6 8.0834 -3.4135 4.1544 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.7211 -1.5953 -1.2328 35 1 1.8929 -2.6774 2.1395 36 1 0.4400 -2.1637 1.2493 37 1 1.8934 -2.6776 0.3593 38 1 1.8933 1.0277 2.4985 39 1 0.4400 0.0001 2.4984 40 1 1.8929 -0.5140 3.3885 41 1 3.9337 0.3057 1.2487 42 1 3.9330 -1.2360 0.3590 43 1 3.4279 -1.7797 3.0845 44 1 6.5246 -4.6186 1.0388 45 1 7.5444 -0.1665 3.4167 46 1 10.0068 -0.1675 3.4159 47 1 11.2373 -2.2484 3.8839 48 1 10.0054 -4.3263 4.3612 49 1 7.5431 -4.3252 4.3623 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362691101.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:31 Heat of formation + Delta-G solvation = -92.652803 kcal Electronic energy + Delta-G solvation = -28651.319048 eV Core-core repulsion = 24963.070122 eV Total energy + Delta-G solvation = -3688.248926 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.15330 -40.31997 -38.93871 -36.28515 -35.46013 -34.04459 -32.62944 -31.66483 -31.34530 -29.53171 -28.76560 -27.82641 -26.60905 -25.52892 -23.31877 -22.92981 -22.03459 -20.95817 -19.73090 -18.78151 -17.83931 -17.21807 -16.96089 -16.70595 -16.59161 -15.99067 -15.72052 -15.64186 -15.37746 -15.26656 -14.93335 -14.52845 -14.16795 -13.95012 -13.91018 -13.73699 -13.53185 -13.25233 -13.11018 -12.97876 -12.85709 -12.82369 -12.79548 -12.72378 -12.48229 -12.26271 -12.08829 -12.05466 -11.76595 -11.74268 -11.40842 -11.17936 -11.15396 -10.68571 -10.63232 -10.10756 -9.56284 -9.37429 -9.09011 -8.05293 -6.25445 0.88303 0.93627 1.39215 1.45365 1.53536 2.35294 2.48073 2.82419 3.21923 3.33280 3.39668 3.67199 3.75063 3.91059 4.17329 4.30081 4.30299 4.34291 4.35779 4.50466 4.62820 4.71159 4.73848 4.77159 4.83281 4.84609 4.92549 4.96532 4.98589 5.01404 5.04946 5.05740 5.10476 5.13658 5.16461 5.22079 5.32343 5.46298 5.52161 5.55163 5.55759 5.71363 5.89124 5.93849 5.98785 6.04502 6.43743 6.53694 6.77960 6.82678 7.14753 7.43492 7.99288 8.93509 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014440 B = 0.004538 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.634959 B = 6168.821607 C = 7374.912484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.137 3.863 3 C -0.146 4.146 4 O -0.579 6.579 5 C -0.088 4.088 6 C -0.148 4.148 7 C -0.143 4.143 8 C 0.149 3.851 9 N -0.721 5.721 10 C 0.546 3.454 11 O -0.589 6.589 12 C 0.046 3.954 13 H 0.067 0.933 14 C -0.531 4.531 15 H 0.072 0.928 16 C 0.040 3.960 17 N -0.873 5.873 18 Si 0.939 3.061 19 H -0.257 1.257 20 H -0.288 1.288 21 H -0.289 1.289 22 C -0.034 4.034 23 C -0.119 4.119 24 C -0.147 4.147 25 C -0.142 4.142 26 C -0.152 4.152 27 C -0.087 4.087 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.041 0.959 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.381 0.619 35 H 0.053 0.947 36 H 0.088 0.912 37 H 0.044 0.956 38 H 0.063 0.937 39 H 0.086 0.914 40 H 0.055 0.945 41 H 0.045 0.955 42 H 0.022 0.978 43 H 0.402 0.598 44 H 0.254 0.746 45 H 0.097 0.903 46 H 0.129 0.871 47 H 0.138 0.862 48 H 0.126 0.874 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.349 6.286 1.656 13.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.097 3.903 3 C -0.203 4.203 4 O -0.388 6.388 5 C -0.088 4.088 6 C -0.205 4.205 7 C -0.200 4.200 8 C 0.025 3.975 9 N -0.374 5.374 10 C 0.335 3.665 11 O -0.469 6.469 12 C 0.025 3.975 13 H 0.085 0.915 14 C -0.569 4.569 15 H 0.090 0.910 16 C -0.164 4.164 17 N -0.507 5.507 18 Si 0.765 3.235 19 H -0.180 1.180 20 H -0.215 1.215 21 H -0.216 1.216 22 C -0.035 4.035 23 C -0.137 4.137 24 C -0.165 4.165 25 C -0.160 4.160 26 C -0.170 4.170 27 C -0.105 4.105 28 H 0.104 0.896 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.111 0.889 34 H 0.230 0.770 35 H 0.072 0.928 36 H 0.106 0.894 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.105 0.895 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.040 0.960 43 H 0.238 0.762 44 H 0.063 0.937 45 H 0.115 0.885 46 H 0.147 0.853 47 H 0.156 0.844 48 H 0.144 0.856 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.451 7.152 0.791 12.689 hybrid contribution -0.370 -1.913 -0.331 1.976 sum -10.822 5.239 0.461 12.032 Atomic orbital electron populations 1.22515 0.93348 1.03487 1.03609 1.21223 0.94030 0.92174 0.82916 1.21927 1.00957 0.94044 1.03410 1.86546 1.78139 1.29645 1.44431 1.21329 0.92492 0.97213 0.97794 1.21959 1.02184 0.94474 1.01890 1.21989 1.02361 1.00246 0.95379 1.21023 0.94025 0.95258 0.87207 1.45729 1.06915 1.59625 1.25089 1.21024 0.81666 0.75616 0.88153 1.90504 1.56511 1.50856 1.49004 1.18015 0.90365 0.96849 0.92291 0.91543 1.20898 1.37052 0.94849 1.04115 0.90964 1.25576 0.94488 1.01087 0.95267 1.70268 1.36602 1.36545 1.07310 0.85793 0.78163 0.81258 0.78276 1.18035 1.21474 1.21579 1.19940 0.96172 0.92525 0.94874 1.21031 0.94700 0.97936 1.00037 1.21189 0.93928 0.98927 1.02466 1.21172 1.00071 0.92706 1.02026 1.21317 0.94351 0.98607 1.02764 1.21132 0.93606 0.97926 0.97868 0.89583 0.91736 0.91143 0.94008 0.91604 0.88870 0.76965 0.92834 0.89359 0.93733 0.91836 0.89545 0.92570 0.93719 0.95959 0.76179 0.93717 0.88461 0.85349 0.84429 0.85589 0.86961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 8.11 71.98 0.58 -2.10 16 2 C 0.14 3.07 0.61 -10.79 -0.01 3.06 16 3 C -0.15 -3.28 8.14 71.98 0.59 -2.70 16 4 O -0.58 -15.80 12.26 -148.98 -1.83 -17.63 16 5 C -0.09 -2.15 0.16 -52.18 -0.01 -2.16 16 6 C -0.15 -3.54 7.64 71.98 0.55 -2.99 16 7 C -0.14 -2.81 7.60 71.98 0.55 -2.27 16 8 C 0.15 5.39 4.07 86.38 0.35 5.74 16 9 N -0.72 -28.69 4.86 -463.05 -2.25 -30.94 16 10 C 0.55 26.66 5.45 87.66 0.48 27.14 16 11 O -0.59 -33.26 13.95 -3.04 -0.04 -33.30 16 12 C 0.05 2.21 2.78 -13.03 -0.04 2.17 16 13 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 14 C -0.53 -25.84 7.12 25.60 0.18 -25.65 16 15 H 0.07 3.36 7.81 -2.91 -0.02 3.33 16 16 C 0.04 2.04 3.99 84.65 0.34 2.38 16 17 N -0.87 -49.05 10.88 21.45 0.23 -48.82 16 18 Si 0.94 40.63 29.54 68.60 2.03 42.65 16 19 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 20 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 21 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 22 C -0.03 -1.68 4.52 -19.87 -0.09 -1.77 16 23 C -0.12 -5.57 8.21 22.27 0.18 -5.39 16 24 C -0.15 -6.00 10.05 22.27 0.22 -5.78 16 25 C -0.14 -5.43 10.05 22.27 0.22 -5.20 16 26 C -0.15 -6.32 10.05 22.27 0.22 -6.09 16 27 C -0.09 -4.16 8.20 22.27 0.18 -3.98 16 28 H 0.09 1.06 6.43 -2.39 -0.02 1.04 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 0.98 6.43 -2.39 -0.02 0.97 16 31 H 0.04 1.16 6.43 -2.39 -0.02 1.14 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.09 1.64 6.43 -2.39 -0.02 1.63 16 34 H 0.38 8.56 7.33 -74.05 -0.54 8.02 16 35 H 0.05 1.45 6.86 -2.39 -0.02 1.43 16 36 H 0.09 1.53 6.43 -2.39 -0.02 1.52 16 37 H 0.04 1.16 6.78 -2.39 -0.02 1.15 16 38 H 0.06 1.22 6.43 -2.39 -0.02 1.20 16 39 H 0.09 1.23 6.43 -2.39 -0.02 1.22 16 40 H 0.06 1.19 6.86 -2.39 -0.02 1.17 16 41 H 0.04 1.69 6.43 -2.39 -0.02 1.68 16 42 H 0.02 0.98 7.68 -2.39 -0.02 0.96 16 43 H 0.40 14.28 6.05 -92.70 -0.56 13.72 16 44 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 45 H 0.10 4.63 7.01 -2.91 -0.02 4.61 16 46 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 47 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 48 H 0.13 4.47 8.06 -2.91 -0.02 4.44 16 49 H 0.11 5.56 6.02 -2.91 -0.02 5.55 16 Total: -1.00 -67.85 370.30 2.52 -65.33 By element: Atomic # 1 Polarization: 48.43 SS G_CDS: -0.13 Total: 48.30 kcal Atomic # 6 Polarization: -30.10 SS G_CDS: 4.51 Total: -25.59 kcal Atomic # 7 Polarization: -77.74 SS G_CDS: -2.02 Total: -79.76 kcal Atomic # 8 Polarization: -49.06 SS G_CDS: -1.87 Total: -50.93 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.65 kcal Total: -67.85 2.52 -65.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362691101.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.323 kcal (2) G-P(sol) polarization free energy of solvation -67.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds