Wall clock time and date at job start Tue Mar 31 2020 14:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47678 * 2 1 4 4 H 1.09005 * 109.46715 * 55.00217 * 3 2 1 5 5 C 1.53000 * 109.47301 * 295.00027 * 3 2 1 6 6 C 1.52997 * 109.47284 * 174.99837 * 3 2 1 7 7 C 1.53006 * 109.47172 * 293.82575 * 6 3 2 8 8 H 1.08995 * 109.47254 * 57.22152 * 7 6 3 9 9 C 1.53002 * 109.47077 * 177.22283 * 7 6 3 10 10 O 1.42895 * 109.47343 * 54.99585 * 9 7 6 11 11 N 1.46504 * 109.46879 * 297.22064 * 7 6 3 12 12 C 1.34777 * 119.99544 * 155.00222 * 11 7 6 13 13 O 1.21282 * 119.99952 * 359.72217 * 12 11 7 14 14 C 1.50701 * 119.99609 * 179.97438 * 12 11 7 15 15 H 1.08995 * 109.47511 * 299.72401 * 14 12 11 16 16 C 1.50697 * 109.46893 * 59.72535 * 14 12 11 17 17 H 1.08002 * 119.99831 * 235.00301 * 16 14 12 18 18 C 1.37875 * 120.00230 * 55.00476 * 16 14 12 19 19 N 1.31510 * 120.00153 * 2.10808 * 18 16 14 20 20 Si 1.86805 * 119.99889 * 182.10534 * 18 16 14 21 21 H 1.48499 * 109.47063 * 60.00272 * 20 18 16 22 22 H 1.48506 * 109.46948 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47152 * 299.99979 * 20 18 16 24 24 C 1.50699 * 109.46848 * 179.72316 * 14 12 11 25 25 C 1.38238 * 119.99779 * 226.63333 * 24 14 12 26 26 C 1.38238 * 119.99831 * 179.78922 * 25 24 14 27 27 C 1.38242 * 119.99930 * 0.43938 * 26 25 24 28 28 C 1.38235 * 119.99744 * 359.81246 * 27 26 25 29 29 C 1.38232 * 120.00201 * 359.97438 * 28 27 26 30 30 H 1.08998 * 109.46945 * 300.00444 * 1 2 3 31 31 H 1.09005 * 109.46807 * 59.99240 * 1 2 3 32 32 H 1.08998 * 109.47269 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46945 * 239.99556 * 2 1 3 34 34 H 1.09005 * 109.46807 * 120.00759 * 2 1 3 35 35 H 1.08998 * 109.46715 * 305.42493 * 5 3 2 36 36 H 1.09001 * 109.46605 * 65.42242 * 5 3 2 37 37 H 1.09000 * 109.46967 * 185.41968 * 5 3 2 38 38 H 1.08999 * 109.47311 * 173.82939 * 6 3 2 39 39 H 1.09002 * 109.47249 * 53.82522 * 6 3 2 40 40 H 1.08992 * 109.46996 * 175.00354 * 9 7 6 41 41 H 1.08997 * 109.46596 * 294.99980 * 9 7 6 42 42 H 0.96698 * 113.99969 * 179.97438 * 10 9 7 43 43 H 0.96991 * 119.99937 * 335.00023 * 11 7 6 44 44 H 0.97003 * 120.00531 * 179.97438 * 19 18 16 45 45 H 1.07997 * 120.00164 * 359.97438 * 25 24 14 46 46 H 1.08005 * 120.00071 * 180.26696 * 26 25 24 47 47 H 1.07997 * 119.99650 * 179.83229 * 27 26 25 48 48 H 1.08003 * 119.99372 * 180.02562 * 28 27 26 49 49 H 1.07999 * 120.00040 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6354 2.1265 -1.3073 6 6 3.5649 1.4441 0.1258 7 6 3.9640 0.9006 1.4992 8 1 3.5497 -0.0992 1.6287 9 6 5.4895 0.8374 1.5991 10 8 6.0393 2.1252 1.3141 11 7 3.4424 1.7846 2.5446 12 6 3.2124 1.3023 3.7819 13 8 3.4324 0.1354 4.0285 14 6 2.6763 2.2118 4.8574 15 1 3.3769 3.0300 5.0238 16 6 1.3451 2.7703 4.4254 17 1 1.1888 3.8388 4.4049 18 6 0.3266 1.9174 4.0563 19 7 0.5030 0.6158 4.1209 20 14 -1.3040 2.6107 3.4647 21 1 -1.0784 3.4440 2.2564 22 1 -2.2250 1.4943 3.1318 23 1 -1.9052 3.4449 4.5362 24 6 2.5030 1.4312 6.1348 25 6 1.3334 1.5475 6.8625 26 6 1.1726 0.8281 8.0319 27 6 2.1850 -0.0004 8.4785 28 6 3.3567 -0.1126 7.7536 29 6 3.5157 0.6033 6.5818 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5140 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5140 0.8900 35 1 1.9885 1.5344 -2.1516 36 1 0.5497 2.2115 -1.3519 37 1 2.0798 3.1210 -1.3497 38 1 3.9374 2.4626 0.0159 39 1 3.9945 0.8141 -0.6531 40 1 5.7754 0.5350 2.6064 41 1 5.8708 0.1124 0.8800 42 1 7.0046 2.1595 1.3595 43 1 3.2627 2.7168 2.3462 44 1 -0.2136 0.0157 3.8616 45 1 0.5440 2.1979 6.5157 46 1 0.2570 0.9156 8.5982 47 1 2.0605 -0.5603 9.3936 48 1 4.1475 -0.7602 8.1023 49 1 4.4309 0.5154 6.0152 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363514230.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:11 Heat of formation + Delta-G solvation = -85.316430 kcal Electronic energy + Delta-G solvation = -29004.450815 eV Core-core repulsion = 25316.520018 eV Total energy + Delta-G solvation = -3687.930797 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.19546 -38.06074 -36.71206 -36.12192 -33.58287 -33.34151 -30.78255 -30.26867 -29.63547 -29.01621 -26.99264 -26.03065 -23.88297 -23.16281 -21.41646 -21.12682 -20.23096 -19.34144 -19.02065 -17.23375 -16.66729 -15.94937 -15.23672 -15.17386 -14.85571 -14.76420 -14.29050 -14.12626 -13.74022 -13.64748 -13.57687 -13.18411 -12.92793 -12.44696 -12.20083 -12.18070 -12.04055 -12.03145 -11.78862 -11.71522 -11.37056 -11.20174 -11.12324 -10.93551 -10.80204 -10.72860 -10.39623 -10.15793 -10.04170 -10.00691 -9.96962 -9.68148 -9.61411 -9.32414 -8.65107 -8.21583 -7.86143 -7.64715 -7.34863 -6.08098 -4.23390 2.59197 2.65265 3.22006 3.29501 3.31448 4.17991 4.30488 4.46600 4.62465 5.02489 5.07756 5.16332 5.20013 5.25645 5.51955 5.59433 5.71027 5.79510 5.82508 5.88627 5.89806 5.94646 6.00903 6.06563 6.07847 6.11973 6.17975 6.23582 6.37464 6.43518 6.46945 6.55301 6.59942 6.70061 6.72741 6.81322 6.88400 6.89897 6.98966 7.18079 7.26058 7.58288 7.65742 7.70057 7.73886 7.83348 7.85865 8.21235 8.32913 8.70131 8.91774 9.42360 9.80035 10.91920 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.011455 B = 0.006090 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.713236 B = 4596.471159 C = 6157.927474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.095 4.095 4 H 0.085 0.915 5 C -0.144 4.144 6 C -0.111 4.111 7 C 0.153 3.847 8 H 0.094 0.906 9 C 0.064 3.936 10 O -0.566 6.566 11 N -0.720 5.720 12 C 0.554 3.446 13 O -0.553 6.553 14 C 0.056 3.944 15 H 0.054 0.946 16 C -0.540 4.540 17 H 0.064 0.936 18 C 0.081 3.919 19 N -0.837 5.837 20 Si 0.877 3.123 21 H -0.274 1.274 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.012 4.012 25 C -0.066 4.066 26 C -0.148 4.148 27 C -0.146 4.146 28 C -0.145 4.145 29 C -0.100 4.100 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.047 0.953 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.049 0.951 41 H 0.041 0.959 42 H 0.369 0.631 43 H 0.397 0.603 44 H 0.264 0.736 45 H 0.127 0.873 46 H 0.100 0.900 47 H 0.099 0.901 48 H 0.099 0.901 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.826 1.248 -6.056 8.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.114 4.114 4 H 0.104 0.896 5 C -0.201 4.201 6 C -0.149 4.149 7 C 0.047 3.953 8 H 0.112 0.888 9 C -0.015 4.015 10 O -0.371 6.371 11 N -0.371 5.371 12 C 0.343 3.657 13 O -0.431 6.431 14 C 0.035 3.965 15 H 0.072 0.928 16 C -0.578 4.578 17 H 0.082 0.918 18 C -0.127 4.127 19 N -0.469 5.469 20 Si 0.704 3.296 21 H -0.199 1.199 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.013 4.013 25 C -0.084 4.084 26 C -0.166 4.166 27 C -0.164 4.164 28 C -0.163 4.163 29 C -0.118 4.118 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.214 0.786 43 H 0.230 0.770 44 H 0.074 0.926 45 H 0.145 0.855 46 H 0.119 0.881 47 H 0.117 0.883 48 H 0.118 0.882 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.238 0.323 -5.978 7.955 hybrid contribution -0.648 0.231 -0.467 0.831 sum 4.589 0.554 -6.445 7.931 Atomic orbital electron populations 1.21755 0.96388 1.00935 1.01524 1.21537 0.95720 0.96495 1.01409 1.21191 0.95150 0.96586 0.98461 0.89644 1.21853 1.01004 0.99991 0.97288 1.21751 0.95530 1.01961 0.95655 1.20838 0.89870 0.96561 0.88070 0.88788 1.22751 0.95672 0.84127 0.98969 1.86507 1.24676 1.32162 1.93710 1.45717 1.68104 1.13108 1.10197 1.20926 0.73173 0.88556 0.83024 1.90520 1.52548 1.18297 1.81705 1.17865 0.97301 0.92746 0.88581 0.92799 1.20618 0.95404 0.93082 1.48655 0.91803 1.24955 0.98151 0.94799 0.94837 1.70051 1.32552 1.01236 1.43057 0.86893 0.84227 0.78809 0.79661 1.19931 1.21256 1.20182 1.19840 0.92326 0.94781 0.94314 1.21137 0.97252 0.97700 0.92270 1.20985 0.98130 0.99439 0.98057 1.20755 0.94926 1.00885 0.99835 1.20810 0.97520 1.01262 0.96712 1.20956 0.99373 0.96761 0.94684 0.92428 0.93409 0.93476 0.93193 0.91213 0.93391 0.92936 0.93035 0.91001 0.91979 0.93311 0.94111 0.78561 0.76978 0.92586 0.85506 0.88146 0.88322 0.88241 0.87611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.67 37.16 0.36 -2.03 16 2 C -0.11 -1.81 5.28 -26.73 -0.14 -1.95 16 3 C -0.10 -1.47 2.32 -90.62 -0.21 -1.68 16 4 H 0.09 1.59 7.47 -51.93 -0.39 1.20 16 5 C -0.14 -1.90 8.81 37.16 0.33 -1.58 16 6 C -0.11 -1.61 3.98 -26.73 -0.11 -1.72 16 7 C 0.15 2.58 2.24 -67.92 -0.15 2.43 16 8 H 0.09 1.82 5.82 -51.93 -0.30 1.52 16 9 C 0.06 0.94 6.85 37.16 0.25 1.20 16 10 O -0.57 -7.64 12.78 -35.23 -0.45 -8.09 16 11 N -0.72 -13.94 4.19 -53.80 -0.23 -14.16 16 12 C 0.55 12.65 5.40 -10.98 -0.06 12.59 16 13 O -0.55 -14.15 13.58 5.56 0.08 -14.08 16 14 C 0.06 1.31 2.78 -94.08 -0.26 1.05 16 15 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 16 C -0.54 -12.96 7.08 -34.44 -0.24 -13.20 16 17 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 18 C 0.08 1.98 4.04 -17.82 -0.07 1.91 16 19 N -0.84 -21.96 10.92 55.43 0.61 -21.35 16 20 Si 0.88 19.61 29.54 -169.99 -5.02 14.58 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 C -0.01 -0.28 4.52 -104.62 -0.47 -0.75 16 25 C -0.07 -1.53 8.24 -39.58 -0.33 -1.86 16 26 C -0.15 -3.11 10.05 -39.58 -0.40 -3.51 16 27 C -0.15 -2.91 10.05 -39.58 -0.40 -3.31 16 28 C -0.14 -2.99 10.05 -39.58 -0.40 -3.39 16 29 C -0.10 -2.26 8.21 -39.59 -0.33 -2.58 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.05 0.68 6.69 -51.93 -0.35 0.33 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 1.29 6.34 -51.93 -0.33 0.96 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.05 0.70 6.84 -51.93 -0.35 0.34 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 1.05 7.65 -51.93 -0.40 0.65 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.37 3.31 9.12 45.56 0.42 3.72 16 43 H 0.40 7.48 8.42 -40.82 -0.34 7.14 16 44 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 45 H 0.13 3.07 6.07 -52.49 -0.32 2.75 16 46 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 47 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 48 H 0.10 1.78 8.06 -52.48 -0.42 1.36 16 49 H 0.11 2.38 6.98 -52.49 -0.37 2.01 16 LS Contribution 386.86 15.07 5.83 5.83 Total: -1.00 -28.51 386.86 -9.16 -37.67 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: -7.35 Total: 17.99 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -2.62 Total: -18.39 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.38 Total: -35.52 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.37 Total: -22.17 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -28.51 -9.16 -37.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363514230.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.648 kcal (2) G-P(sol) polarization free energy of solvation -28.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds