Wall clock time and date at job start Tue Mar 31 2020 14:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47678 * 2 1 4 4 H 1.09005 * 109.46715 * 55.00217 * 3 2 1 5 5 C 1.53000 * 109.47301 * 295.00027 * 3 2 1 6 6 C 1.52997 * 109.47284 * 174.99837 * 3 2 1 7 7 C 1.53006 * 109.47172 * 293.82575 * 6 3 2 8 8 H 1.08995 * 109.47254 * 57.22152 * 7 6 3 9 9 C 1.53002 * 109.47077 * 177.22283 * 7 6 3 10 10 O 1.42895 * 109.47343 * 54.99585 * 9 7 6 11 11 N 1.46504 * 109.46879 * 297.22064 * 7 6 3 12 12 C 1.34777 * 119.99544 * 155.00222 * 11 7 6 13 13 O 1.21282 * 119.99952 * 359.72217 * 12 11 7 14 14 C 1.50701 * 119.99609 * 179.97438 * 12 11 7 15 15 H 1.08995 * 109.47511 * 299.72401 * 14 12 11 16 16 C 1.50697 * 109.46893 * 59.72535 * 14 12 11 17 17 H 1.08002 * 119.99831 * 235.00301 * 16 14 12 18 18 C 1.37875 * 120.00230 * 55.00476 * 16 14 12 19 19 N 1.31510 * 120.00153 * 2.10808 * 18 16 14 20 20 Si 1.86805 * 119.99889 * 182.10534 * 18 16 14 21 21 H 1.48499 * 109.47063 * 60.00272 * 20 18 16 22 22 H 1.48506 * 109.46948 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47152 * 299.99979 * 20 18 16 24 24 C 1.50699 * 109.46848 * 179.72316 * 14 12 11 25 25 C 1.38238 * 119.99779 * 226.63333 * 24 14 12 26 26 C 1.38238 * 119.99831 * 179.78922 * 25 24 14 27 27 C 1.38242 * 119.99930 * 0.43938 * 26 25 24 28 28 C 1.38235 * 119.99744 * 359.81246 * 27 26 25 29 29 C 1.38232 * 120.00201 * 359.97438 * 28 27 26 30 30 H 1.08998 * 109.46945 * 300.00444 * 1 2 3 31 31 H 1.09005 * 109.46807 * 59.99240 * 1 2 3 32 32 H 1.08998 * 109.47269 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46945 * 239.99556 * 2 1 3 34 34 H 1.09005 * 109.46807 * 120.00759 * 2 1 3 35 35 H 1.08998 * 109.46715 * 305.42493 * 5 3 2 36 36 H 1.09001 * 109.46605 * 65.42242 * 5 3 2 37 37 H 1.09000 * 109.46967 * 185.41968 * 5 3 2 38 38 H 1.08999 * 109.47311 * 173.82939 * 6 3 2 39 39 H 1.09002 * 109.47249 * 53.82522 * 6 3 2 40 40 H 1.08992 * 109.46996 * 175.00354 * 9 7 6 41 41 H 1.08997 * 109.46596 * 294.99980 * 9 7 6 42 42 H 0.96698 * 113.99969 * 179.97438 * 10 9 7 43 43 H 0.96991 * 119.99937 * 335.00023 * 11 7 6 44 44 H 0.97003 * 120.00531 * 179.97438 * 19 18 16 45 45 H 1.07997 * 120.00164 * 359.97438 * 25 24 14 46 46 H 1.08005 * 120.00071 * 180.26696 * 26 25 24 47 47 H 1.07997 * 119.99650 * 179.83229 * 27 26 25 48 48 H 1.08003 * 119.99372 * 180.02562 * 28 27 26 49 49 H 1.07999 * 120.00040 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6354 2.1265 -1.3073 6 6 3.5649 1.4441 0.1258 7 6 3.9640 0.9006 1.4992 8 1 3.5497 -0.0992 1.6287 9 6 5.4895 0.8374 1.5991 10 8 6.0393 2.1252 1.3141 11 7 3.4424 1.7846 2.5446 12 6 3.2124 1.3023 3.7819 13 8 3.4324 0.1354 4.0285 14 6 2.6763 2.2118 4.8574 15 1 3.3769 3.0300 5.0238 16 6 1.3451 2.7703 4.4254 17 1 1.1888 3.8388 4.4049 18 6 0.3266 1.9174 4.0563 19 7 0.5030 0.6158 4.1209 20 14 -1.3040 2.6107 3.4647 21 1 -1.0784 3.4440 2.2564 22 1 -2.2250 1.4943 3.1318 23 1 -1.9052 3.4449 4.5362 24 6 2.5030 1.4312 6.1348 25 6 1.3334 1.5475 6.8625 26 6 1.1726 0.8281 8.0319 27 6 2.1850 -0.0004 8.4785 28 6 3.3567 -0.1126 7.7536 29 6 3.5157 0.6033 6.5818 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5140 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5140 0.8900 35 1 1.9885 1.5344 -2.1516 36 1 0.5497 2.2115 -1.3519 37 1 2.0798 3.1210 -1.3497 38 1 3.9374 2.4626 0.0159 39 1 3.9945 0.8141 -0.6531 40 1 5.7754 0.5350 2.6064 41 1 5.8708 0.1124 0.8800 42 1 7.0046 2.1595 1.3595 43 1 3.2627 2.7168 2.3462 44 1 -0.2136 0.0157 3.8616 45 1 0.5440 2.1979 6.5157 46 1 0.2570 0.9156 8.5982 47 1 2.0605 -0.5603 9.3936 48 1 4.1475 -0.7602 8.1023 49 1 4.4309 0.5154 6.0152 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363514230.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:08 Heat of formation + Delta-G solvation = -102.158380 kcal Electronic energy + Delta-G solvation = -29005.181136 eV Core-core repulsion = 25316.520018 eV Total energy + Delta-G solvation = -3688.661118 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -40.84148 -39.58088 -38.26304 -37.27049 -35.42070 -34.84206 -32.60984 -31.66605 -31.33320 -30.32816 -28.72096 -27.17557 -25.73790 -24.44032 -23.02963 -22.73767 -21.70297 -20.92861 -20.45677 -18.70541 -18.19264 -17.54625 -16.96222 -16.70967 -16.62526 -16.13066 -15.81114 -15.45965 -15.31848 -15.16676 -14.85958 -14.74594 -14.36332 -14.11164 -13.90394 -13.77135 -13.70104 -13.23774 -13.08533 -12.96946 -12.95561 -12.75629 -12.68647 -12.52665 -12.37876 -12.23286 -12.05471 -11.76477 -11.42837 -11.39607 -11.26148 -11.20711 -11.14259 -10.83578 -10.57597 -10.04028 -9.47560 -9.35675 -9.07099 -8.01792 -6.19869 0.90029 0.95115 1.39723 1.43835 1.47294 2.38231 2.52357 2.86565 3.25434 3.38119 3.51703 3.80364 3.92874 4.03638 4.23423 4.34907 4.36650 4.38270 4.49258 4.52788 4.55281 4.64671 4.68174 4.71889 4.73506 4.80715 4.82295 4.93579 4.97498 5.03025 5.08394 5.14240 5.17912 5.20787 5.21363 5.25891 5.44074 5.48181 5.54966 5.57729 5.64150 5.74483 5.90624 5.96772 6.01677 6.13276 6.46297 6.55340 6.80259 6.95697 7.20731 7.47739 8.05211 8.96154 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.011455 B = 0.006090 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.713236 B = 4596.471159 C = 6157.927474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.093 4.093 4 H 0.046 0.954 5 C -0.138 4.138 6 C -0.098 4.098 7 C 0.148 3.852 8 H 0.066 0.934 9 C 0.075 3.925 10 O -0.574 6.574 11 N -0.710 5.710 12 C 0.555 3.445 13 O -0.586 6.586 14 C 0.047 3.953 15 H 0.058 0.942 16 C -0.536 4.536 17 H 0.064 0.936 18 C 0.056 3.944 19 N -0.860 5.860 20 Si 0.921 3.079 21 H -0.267 1.267 22 H -0.296 1.296 23 H -0.274 1.274 24 C -0.033 4.033 25 C -0.087 4.087 26 C -0.152 4.152 27 C -0.142 4.142 28 C -0.146 4.146 29 C -0.116 4.116 30 H 0.021 0.979 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.034 0.966 35 H 0.068 0.932 36 H 0.048 0.952 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.025 0.975 41 H 0.070 0.930 42 H 0.391 0.609 43 H 0.398 0.602 44 H 0.253 0.747 45 H 0.110 0.890 46 H 0.125 0.875 47 H 0.137 0.863 48 H 0.129 0.871 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.476 1.326 -7.068 9.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.147 4.147 3 C -0.112 4.112 4 H 0.065 0.935 5 C -0.195 4.195 6 C -0.136 4.136 7 C 0.042 3.958 8 H 0.084 0.916 9 C -0.004 4.004 10 O -0.381 6.381 11 N -0.361 5.361 12 C 0.344 3.656 13 O -0.466 6.466 14 C 0.026 3.974 15 H 0.076 0.924 16 C -0.574 4.574 17 H 0.082 0.918 18 C -0.149 4.149 19 N -0.493 5.493 20 Si 0.748 3.252 21 H -0.192 1.192 22 H -0.222 1.222 23 H -0.199 1.199 24 C -0.034 4.034 25 C -0.105 4.105 26 C -0.170 4.170 27 C -0.160 4.160 28 C -0.164 4.164 29 C -0.134 4.134 30 H 0.040 0.960 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.053 0.947 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.043 0.957 41 H 0.088 0.912 42 H 0.240 0.760 43 H 0.232 0.768 44 H 0.063 0.937 45 H 0.128 0.872 46 H 0.143 0.857 47 H 0.155 0.845 48 H 0.147 0.853 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.915 0.446 -7.014 9.186 hybrid contribution -0.799 0.225 -0.119 0.838 sum 5.116 0.670 -7.132 8.803 Atomic orbital electron populations 1.21729 0.96678 1.01108 1.00776 1.21486 0.95442 0.96815 1.00945 1.21123 0.95628 0.95951 0.98502 0.93501 1.21798 1.00924 1.00509 0.96301 1.21671 0.94849 1.02511 0.94528 1.20975 0.91451 0.94751 0.88595 0.91607 1.22479 0.94004 0.85367 0.98551 1.86445 1.26880 1.31294 1.93507 1.45623 1.67222 1.13415 1.09818 1.20788 0.72961 0.87923 0.83893 1.90486 1.54225 1.19472 1.82416 1.17965 0.97114 0.93156 0.89183 0.92383 1.20743 0.95841 0.92971 1.47838 0.91794 1.25321 1.00055 0.94709 0.94840 1.70198 1.32568 1.02096 1.44470 0.86186 0.81609 0.77961 0.79452 1.19217 1.22246 1.19910 1.19947 0.93093 0.95726 0.94617 1.21102 0.96883 0.98828 0.93735 1.21303 0.99517 0.98830 0.97358 1.21158 0.93895 1.00153 1.00776 1.21181 0.98716 1.00738 0.95783 1.21009 0.99031 0.97582 0.95819 0.95975 0.91172 0.92914 0.90455 0.94686 0.91252 0.93257 0.92209 0.90494 0.89464 0.95697 0.91219 0.75991 0.76766 0.93727 0.87223 0.85727 0.84509 0.85340 0.88397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.68 9.67 71.98 0.70 -3.99 16 2 C -0.11 -3.44 5.28 30.59 0.16 -3.27 16 3 C -0.09 -2.82 2.32 -10.80 -0.03 -2.84 16 4 H 0.05 1.78 7.47 -2.38 -0.02 1.76 16 5 C -0.14 -3.31 8.81 71.98 0.63 -2.68 16 6 C -0.10 -2.69 3.98 30.60 0.12 -2.57 16 7 C 0.15 5.00 2.24 44.99 0.10 5.11 16 8 H 0.07 2.65 5.82 -2.39 -0.01 2.63 16 9 C 0.08 2.15 6.85 71.98 0.49 2.64 16 10 O -0.57 -14.38 12.78 -148.98 -1.90 -16.29 16 11 N -0.71 -28.31 4.19 -442.51 -1.86 -30.16 16 12 C 0.56 26.35 5.40 87.66 0.47 26.82 16 13 O -0.59 -31.27 13.58 -3.04 -0.04 -31.31 16 14 C 0.05 2.27 2.78 -13.03 -0.04 2.23 16 15 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 16 C -0.54 -26.50 7.08 25.60 0.18 -26.32 16 17 H 0.06 3.09 7.81 -2.91 -0.02 3.07 16 18 C 0.06 2.85 4.04 84.65 0.34 3.19 16 19 N -0.86 -46.96 10.92 21.45 0.23 -46.72 16 20 Si 0.92 41.22 29.54 68.60 2.03 43.24 16 21 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 22 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 24 C -0.03 -1.60 4.52 -19.87 -0.09 -1.69 16 25 C -0.09 -4.15 8.24 22.27 0.18 -3.97 16 26 C -0.15 -6.26 10.05 22.27 0.22 -6.04 16 27 C -0.14 -5.36 10.05 22.27 0.22 -5.14 16 28 C -0.15 -5.85 10.05 22.27 0.22 -5.63 16 29 C -0.12 -5.35 8.21 22.27 0.18 -5.17 16 30 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 1.90 6.69 -2.38 -0.02 1.89 16 32 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.03 1.34 6.34 -2.38 -0.02 1.32 16 35 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.05 1.21 6.84 -2.39 -0.02 1.19 16 37 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.08 2.07 7.65 -2.39 -0.02 2.06 16 39 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 42 H 0.39 6.07 9.12 -74.06 -0.68 5.40 16 43 H 0.40 15.39 8.42 -92.71 -0.78 14.61 16 44 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 45 H 0.11 5.48 6.07 -2.91 -0.02 5.46 16 46 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 47 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 48 H 0.13 4.31 8.06 -2.91 -0.02 4.28 16 49 H 0.10 4.56 6.98 -2.91 -0.02 4.54 16 Total: -1.00 -63.81 386.86 2.04 -61.77 By element: Atomic # 1 Polarization: 49.29 SS G_CDS: -0.51 Total: 48.78 kcal Atomic # 6 Polarization: -33.40 SS G_CDS: 4.09 Total: -29.31 kcal Atomic # 7 Polarization: -75.26 SS G_CDS: -1.62 Total: -76.89 kcal Atomic # 8 Polarization: -45.65 SS G_CDS: -1.95 Total: -47.60 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.24 kcal Total: -63.81 2.04 -61.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363514230.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.388 kcal (2) G-P(sol) polarization free energy of solvation -63.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds