Wall clock time and date at job start Tue Mar 31 2020 14:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46958 * 2 1 4 4 H 1.08996 * 109.47323 * 55.00069 * 3 2 1 5 5 C 1.53004 * 109.47398 * 294.99935 * 3 2 1 6 6 C 1.52999 * 109.47100 * 175.00287 * 3 2 1 7 7 C 1.52997 * 109.47218 * 185.00182 * 6 3 2 8 8 H 1.08999 * 109.47001 * 304.99499 * 7 6 3 9 9 C 1.53000 * 109.47150 * 185.00006 * 7 6 3 10 10 O 1.42904 * 109.46919 * 304.99797 * 9 7 6 11 11 N 1.46493 * 109.47167 * 64.99730 * 7 6 3 12 12 C 1.34783 * 119.99949 * 204.99793 * 11 7 6 13 13 O 1.21281 * 120.00007 * 0.02562 * 12 11 7 14 14 C 1.50697 * 119.99993 * 180.02562 * 12 11 7 15 15 H 1.09006 * 109.47001 * 300.00134 * 14 12 11 16 16 C 1.50695 * 109.47558 * 60.00158 * 14 12 11 17 17 H 1.08001 * 119.99847 * 26.77452 * 16 14 12 18 18 C 1.37879 * 120.00180 * 206.77823 * 16 14 12 19 19 N 1.31511 * 119.99871 * 353.16296 * 18 16 14 20 20 Si 1.86798 * 119.99817 * 173.44327 * 18 16 14 21 21 H 1.48497 * 109.47304 * 269.72241 * 20 18 16 22 22 H 1.48506 * 109.47217 * 29.72456 * 20 18 16 23 23 H 1.48503 * 109.47051 * 149.71881 * 20 18 16 24 24 C 1.50704 * 109.47080 * 180.02562 * 14 12 11 25 25 C 1.38230 * 119.99810 * 292.98718 * 24 14 12 26 26 C 1.38236 * 120.00138 * 179.78569 * 25 24 14 27 27 C 1.38234 * 119.99652 * 0.44824 * 26 25 24 28 28 C 1.38229 * 120.00346 * 359.80708 * 27 26 25 29 29 C 1.38235 * 120.00149 * 113.26473 * 24 14 12 30 30 H 1.09003 * 109.46921 * 59.99874 * 1 2 3 31 31 H 1.08991 * 109.47291 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46809 * 300.00155 * 1 2 3 33 33 H 1.08999 * 109.47059 * 240.00501 * 2 1 3 34 34 H 1.08998 * 109.47364 * 119.99947 * 2 1 3 35 35 H 1.09004 * 109.46971 * 59.99991 * 5 3 2 36 36 H 1.08991 * 109.47100 * 180.02562 * 5 3 2 37 37 H 1.09005 * 109.46803 * 300.00412 * 5 3 2 38 38 H 1.09006 * 109.47581 * 64.99722 * 6 3 2 39 39 H 1.09003 * 109.47206 * 304.99767 * 6 3 2 40 40 H 1.08999 * 109.47401 * 64.99387 * 9 7 6 41 41 H 1.08997 * 109.47400 * 184.99981 * 9 7 6 42 42 H 0.96702 * 114.00111 * 180.02562 * 10 9 7 43 43 H 0.97001 * 120.00251 * 25.00610 * 11 7 6 44 44 H 0.96993 * 120.00147 * 354.84876 * 19 18 16 45 45 H 1.08009 * 120.00182 * 0.02562 * 25 24 14 46 46 H 1.08004 * 120.00376 * 180.27357 * 26 25 24 47 47 H 1.08003 * 119.99808 * 179.83092 * 27 26 25 48 48 H 1.08000 * 120.00288 * 180.02562 * 28 27 26 49 49 H 1.07997 * 119.99991 * 359.97108 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5648 1.4444 0.1256 7 6 4.0644 2.8850 0.2511 8 1 3.6971 3.4716 -0.5910 9 6 5.5944 2.8960 0.2513 10 8 6.0768 2.0337 1.2838 11 7 3.5717 3.4656 1.5026 12 6 3.4334 4.8014 1.6174 13 8 3.7165 5.5227 0.6844 14 6 2.9271 5.3986 2.9050 15 1 1.9306 5.0114 3.1179 16 6 3.8598 5.0312 4.0301 17 1 4.8997 4.8251 3.8240 18 6 3.3856 4.9583 5.3227 19 7 2.1563 5.3383 5.5946 20 14 4.4918 4.3270 6.6892 21 1 4.3304 2.8564 6.8172 22 1 5.9065 4.6435 6.3668 23 1 4.1182 4.9794 7.9698 24 6 2.8650 6.8985 2.7727 25 6 4.0310 7.6300 2.6457 26 6 3.9739 9.0054 2.5200 27 6 2.7512 9.6502 2.5306 28 6 1.5855 8.9193 2.6629 29 6 1.6424 7.5434 2.7842 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.5489 2.1253 -1.3969 36 1 1.9989 3.1541 -1.3075 37 1 2.0699 1.5875 -2.1492 38 1 4.0030 0.9836 -0.7597 39 1 3.8571 0.8801 1.0113 40 1 5.9605 2.5468 -0.7141 41 1 5.9505 3.9107 0.4296 42 1 7.0411 1.9918 1.3427 43 1 3.3451 2.8886 2.2487 44 1 1.6082 5.7392 4.9020 45 1 4.9866 7.1265 2.6408 46 1 4.8847 9.5765 2.4163 47 1 2.7068 10.7251 2.4351 48 1 0.6302 9.4230 2.6708 49 1 0.7316 6.9723 2.8875 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363514254.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:21 Heat of formation + Delta-G solvation = -97.620703 kcal Electronic energy + Delta-G solvation = -28062.697267 eV Core-core repulsion = 24374.232917 eV Total energy + Delta-G solvation = -3688.464350 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.54697 -38.32855 -37.14814 -36.27601 -33.92522 -33.82158 -30.97018 -30.65202 -30.02046 -28.87049 -26.98598 -26.44286 -23.83045 -23.58398 -21.67597 -21.46105 -20.36497 -19.71754 -19.44865 -17.46745 -17.10909 -16.19199 -15.73784 -15.46733 -15.21175 -14.87476 -14.57342 -14.33505 -13.90197 -13.78083 -13.52660 -13.46074 -13.19951 -12.96644 -12.57617 -12.49416 -12.33947 -12.11160 -12.01523 -11.99360 -11.62189 -11.48579 -11.42529 -11.04949 -10.90689 -10.83594 -10.53138 -10.41602 -10.29127 -10.27475 -10.19433 -10.14376 -9.78257 -8.95091 -8.76836 -8.58073 -8.32839 -8.02181 -7.63714 -6.51377 -4.27843 2.28965 2.34027 3.37527 3.40616 3.56907 3.64218 3.98593 4.43106 4.52070 4.66236 4.77915 4.91231 4.94583 5.20238 5.27497 5.33436 5.39213 5.49992 5.55191 5.58555 5.66284 5.68399 5.70807 5.79611 5.82742 5.88407 5.94413 5.97753 6.03652 6.09034 6.10276 6.19141 6.23021 6.31303 6.41128 6.48200 6.49029 6.54063 6.65179 6.88986 6.98823 7.22349 7.29549 7.36515 7.61603 7.79181 7.84809 7.97456 8.26029 8.38512 8.65791 9.19491 9.43855 10.86347 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009842 B = 0.004704 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2844.301789 B = 5951.234777 C = 6752.191879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.095 4.095 4 H 0.076 0.924 5 C -0.150 4.150 6 C -0.114 4.114 7 C 0.147 3.853 8 H 0.095 0.905 9 C 0.065 3.935 10 O -0.563 6.563 11 N -0.713 5.713 12 C 0.535 3.465 13 O -0.570 6.570 14 C 0.043 3.957 15 H 0.063 0.937 16 C -0.588 4.588 17 H 0.058 0.942 18 C 0.031 3.969 19 N -0.896 5.896 20 Si 1.070 2.930 21 H -0.285 1.285 22 H -0.288 1.288 23 H -0.285 1.285 24 C -0.018 4.018 25 C -0.078 4.078 26 C -0.133 4.133 27 C -0.147 4.147 28 C -0.128 4.128 29 C -0.128 4.128 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.043 0.957 41 H 0.050 0.950 42 H 0.372 0.628 43 H 0.406 0.594 44 H 0.274 0.726 45 H 0.111 0.889 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.108 0.892 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.294 -6.825 -10.274 12.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.114 4.114 4 H 0.094 0.906 5 C -0.207 4.207 6 C -0.152 4.152 7 C 0.042 3.958 8 H 0.112 0.888 9 C -0.015 4.015 10 O -0.367 6.367 11 N -0.365 5.365 12 C 0.324 3.676 13 O -0.449 6.449 14 C 0.022 3.978 15 H 0.080 0.920 16 C -0.626 4.626 17 H 0.076 0.924 18 C -0.175 4.175 19 N -0.530 5.530 20 Si 0.898 3.102 21 H -0.212 1.212 22 H -0.214 1.214 23 H -0.211 1.211 24 C -0.019 4.019 25 C -0.096 4.096 26 C -0.151 4.151 27 C -0.165 4.165 28 C -0.147 4.147 29 C -0.146 4.146 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.218 0.782 43 H 0.241 0.759 44 H 0.086 0.914 45 H 0.129 0.871 46 H 0.125 0.875 47 H 0.124 0.876 48 H 0.126 0.874 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.857 -6.777 -9.232 11.485 hybrid contribution 0.572 0.347 -1.323 1.483 sum 1.429 -6.430 -10.555 12.442 Atomic orbital electron populations 1.21825 0.96106 1.01177 1.02030 1.21554 0.95759 0.96469 1.01696 1.21199 0.95367 0.95958 0.98857 0.90596 1.21928 1.01147 1.00756 0.96874 1.21790 0.94936 0.95658 1.02836 1.20977 0.91029 0.94483 0.89331 0.88773 1.22655 0.95648 0.93661 0.89487 1.86512 1.25907 1.68011 1.56301 1.45862 1.67617 1.07591 1.15404 1.21258 0.75518 0.81398 0.89434 1.90571 1.52243 1.60537 1.41599 1.18158 0.99420 0.88683 0.91528 0.91969 1.21573 0.96514 1.52489 0.91980 0.92397 1.25827 0.97932 0.94646 0.99137 1.70739 1.08293 1.36383 1.37611 0.83522 0.74673 0.76533 0.75506 1.21152 1.21366 1.21072 1.20138 0.92123 0.96895 0.92748 1.20778 0.98363 0.92851 0.97608 1.20981 0.96977 0.94887 1.02270 1.20812 0.92975 0.98596 1.04103 1.20878 0.97437 0.94233 1.02111 1.20970 0.97328 0.94305 1.02035 0.92666 0.93157 0.92594 0.92376 0.91981 0.92706 0.92375 0.93060 0.91322 0.90461 0.93918 0.93154 0.78192 0.75861 0.91423 0.87092 0.87475 0.87558 0.87436 0.87365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.67 37.16 0.36 -1.18 16 2 C -0.12 -1.23 5.40 -26.73 -0.14 -1.37 16 3 C -0.10 -1.15 2.33 -90.62 -0.21 -1.36 16 4 H 0.08 1.07 7.62 -51.93 -0.40 0.67 16 5 C -0.15 -1.75 8.71 37.16 0.32 -1.42 16 6 C -0.11 -1.43 3.94 -26.73 -0.11 -1.53 16 7 C 0.15 2.24 2.23 -67.94 -0.15 2.09 16 8 H 0.09 1.52 5.78 -51.93 -0.30 1.22 16 9 C 0.06 0.93 6.85 37.16 0.25 1.19 16 10 O -0.56 -7.95 12.83 -35.23 -0.45 -8.40 16 11 N -0.71 -13.11 4.29 -53.81 -0.23 -13.34 16 12 C 0.53 11.76 7.01 -10.98 -0.08 11.69 16 13 O -0.57 -13.59 15.12 5.56 0.08 -13.51 16 14 C 0.04 1.03 1.92 -94.08 -0.18 0.85 16 15 H 0.06 1.54 6.82 -51.93 -0.35 1.19 16 16 C -0.59 -15.03 7.43 -34.44 -0.26 -15.28 16 17 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 18 C 0.03 0.83 5.45 -17.82 -0.10 0.73 16 19 N -0.90 -25.10 13.56 55.43 0.75 -24.35 16 20 Si 1.07 23.97 29.91 -169.99 -5.08 18.88 16 21 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.29 -6.25 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C -0.02 -0.43 4.02 -104.62 -0.42 -0.85 16 25 C -0.08 -1.79 8.36 -39.59 -0.33 -2.12 16 26 C -0.13 -2.68 10.05 -39.58 -0.40 -3.07 16 27 C -0.15 -2.77 10.05 -39.59 -0.40 -3.17 16 28 C -0.13 -2.51 10.05 -39.58 -0.40 -2.91 16 29 C -0.13 -2.81 9.24 -39.58 -0.37 -3.18 16 30 H 0.05 0.53 6.57 -51.93 -0.34 0.19 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.61 6.57 -51.93 -0.34 0.26 16 36 H 0.06 0.77 6.46 -51.93 -0.34 0.44 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 1.03 7.73 -51.93 -0.40 0.63 16 40 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.37 3.68 9.12 45.56 0.42 4.09 16 43 H 0.41 7.53 8.49 -40.82 -0.35 7.18 16 44 H 0.27 7.62 6.29 -40.82 -0.26 7.36 16 45 H 0.11 2.62 7.86 -52.48 -0.41 2.20 16 46 H 0.11 1.84 8.06 -52.48 -0.42 1.42 16 47 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 48 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 49 H 0.11 2.25 7.96 -52.49 -0.42 1.83 16 LS Contribution 394.11 15.07 5.94 5.94 Total: -1.00 -30.49 394.11 -8.93 -39.42 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -7.34 Total: 16.25 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -2.60 Total: -20.89 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.52 Total: -37.69 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.37 Total: -21.91 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -5.08 Total: 18.88 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.49 -8.93 -39.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363514254.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.199 kcal (2) G-P(sol) polarization free energy of solvation -30.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds