Wall clock time and date at job start Tue Mar 31 2020 14:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46892 * 2 1 4 4 H 1.09004 * 109.46776 * 54.99781 * 3 2 1 5 5 C 1.53004 * 109.46938 * 295.00046 * 3 2 1 6 6 C 1.52999 * 109.46787 * 175.00012 * 3 2 1 7 7 H 1.08992 * 109.47455 * 59.99931 * 6 3 2 8 8 C 1.53005 * 109.46787 * 179.97438 * 6 3 2 9 9 N 1.46494 * 109.46955 * 184.99838 * 8 6 3 10 10 C 1.34775 * 120.00183 * 185.25209 * 9 8 6 11 11 O 1.21285 * 119.99548 * 359.97438 * 10 9 8 12 12 C 1.50697 * 120.00451 * 180.02562 * 10 9 8 13 13 H 1.09001 * 109.46711 * 299.99947 * 12 10 9 14 14 C 1.50706 * 109.47287 * 59.99818 * 12 10 9 15 15 H 1.07995 * 119.99598 * 33.29208 * 14 12 10 16 16 C 1.37881 * 120.00008 * 213.30060 * 14 12 10 17 17 N 1.31509 * 119.99770 * 186.80975 * 16 14 12 18 18 Si 1.86803 * 119.99674 * 6.80892 * 16 14 12 19 19 H 1.48501 * 109.46890 * 275.40469 * 18 16 14 20 20 H 1.48497 * 109.47606 * 35.41011 * 18 16 14 21 21 H 1.48507 * 109.46682 * 155.40914 * 18 16 14 22 22 C 1.50700 * 109.47188 * 179.97438 * 12 10 9 23 23 C 1.38231 * 120.00061 * 294.70343 * 22 12 10 24 24 C 1.38236 * 119.99782 * 179.78813 * 23 22 12 25 25 C 1.38230 * 120.00104 * 0.44450 * 24 23 22 26 26 C 1.38239 * 119.99991 * 359.81377 * 25 24 23 27 27 C 1.38232 * 119.99992 * 359.97408 * 26 25 24 28 28 O 1.42897 * 109.47170 * 299.99515 * 6 3 2 29 29 C 1.42905 * 113.99970 * 127.58733 * 28 6 3 30 30 H 1.09000 * 109.47254 * 60.00550 * 1 2 3 31 31 H 1.09001 * 109.47249 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47304 * 299.99781 * 1 2 3 33 33 H 1.08996 * 109.47304 * 240.00219 * 2 1 3 34 34 H 1.09004 * 109.47177 * 119.99943 * 2 1 3 35 35 H 1.08994 * 109.47248 * 59.99808 * 5 3 2 36 36 H 1.09001 * 109.46686 * 180.02562 * 5 3 2 37 37 H 1.09002 * 109.46467 * 299.99730 * 5 3 2 38 38 H 1.09003 * 109.46838 * 65.00348 * 8 6 3 39 39 H 1.08995 * 109.47334 * 305.00144 * 8 6 3 40 40 H 0.97004 * 119.99891 * 5.25780 * 9 8 6 41 41 H 0.97000 * 119.99445 * 179.97438 * 17 16 14 42 42 H 1.07994 * 120.00270 * 0.02562 * 23 22 12 43 43 H 1.07999 * 120.00330 * 180.27519 * 24 23 22 44 44 H 1.08007 * 120.00279 * 179.83585 * 25 24 23 45 45 H 1.08000 * 120.00010 * 180.02562 * 26 25 24 46 46 H 1.07999 * 120.00426 * 180.02562 * 27 26 25 47 47 H 1.09000 * 109.47089 * 185.01749 * 29 28 6 48 48 H 1.08999 * 109.47049 * 305.02334 * 29 28 6 49 49 H 1.09002 * 109.46870 * 65.01892 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5648 1.4444 0.1257 7 1 3.9994 0.9054 -0.7160 8 6 4.0748 2.8869 0.1251 9 7 5.5398 2.8869 0.1251 10 6 6.2137 4.0492 0.2314 11 8 5.6072 5.0952 0.3266 12 6 7.7207 4.0493 0.2309 13 1 8.0843 3.4563 1.0702 14 6 8.2226 3.4541 -1.0595 15 1 7.6652 3.5979 -1.9732 16 6 9.3934 2.7260 -1.0734 17 7 9.9021 2.3208 -2.2164 18 14 10.2569 2.3152 0.5314 19 1 11.1253 3.4516 0.9311 20 1 9.2445 2.0697 1.5896 21 1 11.0875 1.0978 0.3489 22 6 8.2230 5.4642 0.3598 23 6 7.9813 6.3780 -0.6488 24 6 8.4383 7.6771 -0.5285 25 6 9.1449 8.0599 0.5962 26 6 9.3912 7.1446 1.6025 27 6 8.9305 5.8467 1.4842 28 8 3.9428 0.8056 1.3468 29 6 4.9053 -0.2380 1.1831 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.5489 2.1252 -1.3970 36 1 1.9989 3.1541 -1.3075 37 1 2.0699 1.5875 -2.1491 38 1 3.7115 3.4011 1.0149 39 1 3.7115 3.4004 -0.7651 40 1 6.0247 2.0503 0.0485 41 1 10.7260 1.8089 -2.2262 42 1 7.4321 6.0782 -1.5290 43 1 8.2456 8.3923 -1.3145 44 1 9.5043 9.0742 0.6890 45 1 9.9429 7.4438 2.4814 46 1 9.1225 5.1317 2.2705 47 1 5.0730 -0.7310 2.1406 48 1 4.5340 -0.9645 0.4603 49 1 5.8430 0.1857 0.8234 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417453809.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:42 Heat of formation + Delta-G solvation = -80.562638 kcal Electronic energy + Delta-G solvation = -27605.137227 eV Core-core repulsion = 23917.412570 eV Total energy + Delta-G solvation = -3687.724657 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.58026 -38.79919 -37.66517 -35.73511 -33.88774 -33.62875 -31.51237 -30.77497 -30.09150 -28.29836 -27.51027 -26.03816 -25.12755 -23.51764 -21.96778 -21.77355 -20.87133 -20.21728 -19.15023 -17.16229 -16.80605 -16.50512 -16.15032 -15.81611 -15.17968 -14.88290 -14.58631 -14.50377 -14.26894 -13.90490 -13.73733 -13.59117 -13.35922 -12.95302 -12.72438 -12.66473 -12.56639 -12.51310 -12.09916 -11.89510 -11.85227 -11.78202 -11.63618 -11.25575 -11.11151 -11.04242 -10.86965 -10.66427 -10.57776 -10.42102 -10.25674 -9.93283 -9.54767 -9.51803 -8.94070 -8.69892 -8.36216 -8.09253 -7.77918 -6.32228 -4.35862 2.19540 2.26050 3.14007 3.20249 3.24792 3.61683 3.73640 3.89253 4.20508 4.61313 4.66877 4.80931 4.86516 5.00266 5.10414 5.14659 5.34287 5.36655 5.43209 5.45302 5.50113 5.58448 5.59524 5.63495 5.73342 5.75354 5.79158 5.84929 5.87390 5.94222 5.98203 5.98679 6.03477 6.21331 6.24443 6.29816 6.32919 6.35608 6.48851 6.77776 6.88867 7.12466 7.20821 7.21684 7.28987 7.29884 7.62933 7.83838 8.18314 8.29437 8.68076 9.13671 9.26221 10.78873 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013651 B = 0.003867 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.670031 B = 7239.150948 C = 8329.402304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.093 4.093 4 H 0.080 0.920 5 C -0.154 4.154 6 C 0.081 3.919 7 H 0.071 0.929 8 C 0.107 3.893 9 N -0.726 5.726 10 C 0.535 3.465 11 O -0.561 6.561 12 C 0.021 3.979 13 H 0.068 0.932 14 C -0.512 4.512 15 H 0.082 0.918 16 C 0.086 3.914 17 N -0.882 5.882 18 Si 0.863 3.137 19 H -0.266 1.266 20 H -0.263 1.263 21 H -0.284 1.284 22 C -0.026 4.026 23 C -0.071 4.071 24 C -0.130 4.130 25 C -0.143 4.143 26 C -0.129 4.129 27 C -0.136 4.136 28 O -0.378 6.378 29 C 0.027 3.973 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.401 0.599 41 H 0.269 0.731 42 H 0.116 0.884 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.109 0.891 46 H 0.107 0.893 47 H 0.084 0.916 48 H 0.042 0.958 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.594 -3.775 4.741 13.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.112 4.112 4 H 0.098 0.902 5 C -0.211 4.211 6 C 0.023 3.977 7 H 0.089 0.911 8 C -0.017 4.017 9 N -0.378 5.378 10 C 0.324 3.676 11 O -0.440 6.440 12 C 0.000 4.000 13 H 0.086 0.914 14 C -0.549 4.549 15 H 0.100 0.900 16 C -0.119 4.119 17 N -0.517 5.517 18 Si 0.690 3.310 19 H -0.191 1.191 20 H -0.188 1.188 21 H -0.210 1.210 22 C -0.027 4.027 23 C -0.089 4.089 24 C -0.148 4.148 25 C -0.162 4.162 26 C -0.147 4.147 27 C -0.154 4.154 28 O -0.297 6.297 29 C -0.069 4.069 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.236 0.764 41 H 0.079 0.921 42 H 0.134 0.866 43 H 0.129 0.871 44 H 0.126 0.874 45 H 0.127 0.873 46 H 0.125 0.875 47 H 0.102 0.898 48 H 0.060 0.940 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.945 -3.090 4.875 13.266 hybrid contribution 1.103 -0.828 0.431 1.445 sum -10.842 -3.918 5.305 12.690 Atomic orbital electron populations 1.21806 0.95906 1.01340 1.01856 1.21517 0.95789 0.96050 1.02181 1.21319 0.93617 0.97083 0.99175 0.90190 1.21976 1.01580 1.01038 0.96481 1.22473 0.94777 0.93009 0.87440 0.91115 1.21726 0.81796 0.95742 1.02469 1.45821 1.05625 1.10210 1.76166 1.21099 0.90862 0.82474 0.73175 1.90592 1.71099 1.31704 1.50609 1.18513 0.88870 0.92007 1.00646 0.91397 1.20537 1.08839 1.33041 0.92478 0.90009 1.24971 0.96032 0.94793 0.96059 1.69872 1.20311 1.36478 1.25071 0.87014 0.80488 0.78965 0.84523 1.19068 1.18805 1.21033 1.20045 0.94799 0.95527 0.92312 1.20825 0.97669 0.92178 0.98270 1.21025 0.99563 0.96419 0.97762 1.20855 1.01440 0.98740 0.95129 1.20872 1.01241 0.93837 0.98752 1.20961 1.00700 0.95995 0.97757 1.87909 1.60740 1.50757 1.30298 1.22903 0.91892 0.89916 1.02228 0.92559 0.93030 0.92763 0.92295 0.91324 0.92006 0.91776 0.92415 0.91219 0.90917 0.76414 0.92132 0.86558 0.87148 0.87351 0.87293 0.87495 0.89763 0.93983 0.93534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.67 37.16 0.36 -0.87 16 2 C -0.12 -1.10 5.33 -26.73 -0.14 -1.25 16 3 C -0.09 -0.98 2.19 -90.62 -0.20 -1.18 16 4 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 5 C -0.15 -1.50 8.60 37.16 0.32 -1.18 16 6 C 0.08 1.03 1.85 -26.73 -0.05 0.98 16 7 H 0.07 0.87 7.59 -51.93 -0.39 0.48 16 8 C 0.11 1.67 5.13 -4.04 -0.02 1.65 16 9 N -0.73 -13.49 5.40 -60.30 -0.33 -13.82 16 10 C 0.54 11.82 7.04 -10.99 -0.08 11.74 16 11 O -0.56 -13.52 15.38 5.55 0.09 -13.44 16 12 C 0.02 0.49 1.96 -94.07 -0.18 0.30 16 13 H 0.07 1.54 4.80 -51.93 -0.25 1.29 16 14 C -0.51 -13.09 8.04 -34.44 -0.28 -13.36 16 15 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 16 C 0.09 2.27 5.47 -17.82 -0.10 2.17 16 17 N -0.88 -24.73 13.96 55.43 0.77 -23.95 16 18 Si 0.86 19.72 27.34 -169.99 -4.65 15.07 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.26 -5.61 6.36 56.52 0.36 -5.25 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 C -0.03 -0.59 4.31 -104.62 -0.45 -1.04 16 23 C -0.07 -1.59 8.27 -39.58 -0.33 -1.92 16 24 C -0.13 -2.51 10.05 -39.58 -0.40 -2.91 16 25 C -0.14 -2.58 10.05 -39.58 -0.40 -2.98 16 26 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 27 C -0.14 -2.84 9.67 -39.58 -0.38 -3.22 16 28 O -0.38 -5.09 9.53 -35.23 -0.34 -5.42 16 29 C 0.03 0.31 10.66 101.05 1.08 1.39 16 30 H 0.06 0.43 6.57 -51.93 -0.34 0.09 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.69 7.54 -51.93 -0.39 0.30 16 35 H 0.06 0.52 6.56 -51.93 -0.34 0.18 16 36 H 0.06 0.68 6.32 -51.93 -0.33 0.35 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 1.16 8.13 -51.93 -0.42 0.74 16 39 H 0.07 1.13 6.17 -51.93 -0.32 0.81 16 40 H 0.40 7.15 6.90 -40.82 -0.28 6.86 16 41 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.12 2.68 7.92 -52.49 -0.42 2.26 16 43 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 44 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 45 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 46 H 0.11 2.07 7.95 -52.49 -0.42 1.65 16 47 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.04 0.41 8.09 -51.93 -0.42 -0.01 16 49 H 0.05 0.58 6.78 -51.93 -0.35 0.22 16 LS Contribution 391.20 15.07 5.90 5.90 Total: -1.00 -30.11 391.20 -8.28 -38.39 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -8.08 Total: 11.73 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -1.64 Total: -14.45 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.45 Total: -37.77 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.25 Total: -18.86 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.65 Total: 15.07 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.11 -8.28 -38.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417453809.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.174 kcal (2) G-P(sol) polarization free energy of solvation -30.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds