Wall clock time and date at job start Tue Mar 31 2020 14:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46892 * 2 1 4 4 H 1.09004 * 109.46776 * 54.99781 * 3 2 1 5 5 C 1.53004 * 109.46938 * 295.00046 * 3 2 1 6 6 C 1.52999 * 109.46787 * 175.00012 * 3 2 1 7 7 H 1.08992 * 109.47455 * 59.99931 * 6 3 2 8 8 C 1.53005 * 109.46787 * 179.97438 * 6 3 2 9 9 N 1.46494 * 109.46955 * 184.99838 * 8 6 3 10 10 C 1.34775 * 120.00183 * 185.25209 * 9 8 6 11 11 O 1.21285 * 119.99548 * 359.97438 * 10 9 8 12 12 C 1.50697 * 120.00451 * 180.02562 * 10 9 8 13 13 H 1.09001 * 109.46711 * 299.99947 * 12 10 9 14 14 C 1.50706 * 109.47287 * 59.99818 * 12 10 9 15 15 H 1.07995 * 119.99598 * 33.29208 * 14 12 10 16 16 C 1.37881 * 120.00008 * 213.30060 * 14 12 10 17 17 N 1.31509 * 119.99770 * 186.80975 * 16 14 12 18 18 Si 1.86803 * 119.99674 * 6.80892 * 16 14 12 19 19 H 1.48501 * 109.46890 * 275.40469 * 18 16 14 20 20 H 1.48497 * 109.47606 * 35.41011 * 18 16 14 21 21 H 1.48507 * 109.46682 * 155.40914 * 18 16 14 22 22 C 1.50700 * 109.47188 * 179.97438 * 12 10 9 23 23 C 1.38231 * 120.00061 * 294.70343 * 22 12 10 24 24 C 1.38236 * 119.99782 * 179.78813 * 23 22 12 25 25 C 1.38230 * 120.00104 * 0.44450 * 24 23 22 26 26 C 1.38239 * 119.99991 * 359.81377 * 25 24 23 27 27 C 1.38232 * 119.99992 * 359.97408 * 26 25 24 28 28 O 1.42897 * 109.47170 * 299.99515 * 6 3 2 29 29 C 1.42905 * 113.99970 * 127.58733 * 28 6 3 30 30 H 1.09000 * 109.47254 * 60.00550 * 1 2 3 31 31 H 1.09001 * 109.47249 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47304 * 299.99781 * 1 2 3 33 33 H 1.08996 * 109.47304 * 240.00219 * 2 1 3 34 34 H 1.09004 * 109.47177 * 119.99943 * 2 1 3 35 35 H 1.08994 * 109.47248 * 59.99808 * 5 3 2 36 36 H 1.09001 * 109.46686 * 180.02562 * 5 3 2 37 37 H 1.09002 * 109.46467 * 299.99730 * 5 3 2 38 38 H 1.09003 * 109.46838 * 65.00348 * 8 6 3 39 39 H 1.08995 * 109.47334 * 305.00144 * 8 6 3 40 40 H 0.97004 * 119.99891 * 5.25780 * 9 8 6 41 41 H 0.97000 * 119.99445 * 179.97438 * 17 16 14 42 42 H 1.07994 * 120.00270 * 0.02562 * 23 22 12 43 43 H 1.07999 * 120.00330 * 180.27519 * 24 23 22 44 44 H 1.08007 * 120.00279 * 179.83585 * 25 24 23 45 45 H 1.08000 * 120.00010 * 180.02562 * 26 25 24 46 46 H 1.07999 * 120.00426 * 180.02562 * 27 26 25 47 47 H 1.09000 * 109.47089 * 185.01749 * 29 28 6 48 48 H 1.08999 * 109.47049 * 305.02334 * 29 28 6 49 49 H 1.09002 * 109.46870 * 65.01892 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5648 1.4444 0.1257 7 1 3.9994 0.9054 -0.7160 8 6 4.0748 2.8869 0.1251 9 7 5.5398 2.8869 0.1251 10 6 6.2137 4.0492 0.2314 11 8 5.6072 5.0952 0.3266 12 6 7.7207 4.0493 0.2309 13 1 8.0843 3.4563 1.0702 14 6 8.2226 3.4541 -1.0595 15 1 7.6652 3.5979 -1.9732 16 6 9.3934 2.7260 -1.0734 17 7 9.9021 2.3208 -2.2164 18 14 10.2569 2.3152 0.5314 19 1 11.1253 3.4516 0.9311 20 1 9.2445 2.0697 1.5896 21 1 11.0875 1.0978 0.3489 22 6 8.2230 5.4642 0.3598 23 6 7.9813 6.3780 -0.6488 24 6 8.4383 7.6771 -0.5285 25 6 9.1449 8.0599 0.5962 26 6 9.3912 7.1446 1.6025 27 6 8.9305 5.8467 1.4842 28 8 3.9428 0.8056 1.3468 29 6 4.9053 -0.2380 1.1831 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.5489 2.1252 -1.3970 36 1 1.9989 3.1541 -1.3075 37 1 2.0699 1.5875 -2.1491 38 1 3.7115 3.4011 1.0149 39 1 3.7115 3.4004 -0.7651 40 1 6.0247 2.0503 0.0485 41 1 10.7260 1.8089 -2.2262 42 1 7.4321 6.0782 -1.5290 43 1 8.2456 8.3923 -1.3145 44 1 9.5043 9.0742 0.6890 45 1 9.9429 7.4438 2.4814 46 1 9.1225 5.1317 2.2705 47 1 5.0730 -0.7310 2.1406 48 1 4.5340 -0.9645 0.4603 49 1 5.8430 0.1857 0.8234 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417453809.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:41 Heat of formation + Delta-G solvation = -98.072700 kcal Electronic energy + Delta-G solvation = -27605.896520 eV Core-core repulsion = 23917.412570 eV Total energy + Delta-G solvation = -3688.483950 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.11157 -40.05386 -39.18544 -36.61678 -35.55591 -35.34892 -33.36006 -31.76687 -31.63304 -29.70679 -28.70445 -27.21597 -26.08242 -25.28005 -23.39665 -23.03411 -22.36526 -21.29851 -20.62552 -19.13226 -18.07705 -17.84432 -17.74083 -17.11892 -16.41687 -16.33043 -15.90399 -15.82123 -15.67271 -15.40808 -15.11803 -14.74260 -14.51836 -14.27293 -14.24452 -14.17135 -14.00238 -13.67566 -13.48069 -13.38998 -12.96673 -12.79324 -12.77348 -12.64309 -12.56296 -12.17839 -12.03369 -11.99917 -11.76656 -11.63272 -11.46409 -11.43432 -11.41763 -10.91574 -10.71727 -10.40743 -9.92922 -9.64940 -9.37899 -8.36137 -6.43966 0.63725 0.70346 1.32181 1.37219 1.42115 1.85268 2.28918 2.40315 2.73917 2.93946 3.15555 3.63767 3.87297 3.94935 4.08211 4.16023 4.20334 4.23753 4.30662 4.34600 4.38530 4.46110 4.53468 4.55409 4.56967 4.61700 4.65777 4.71039 4.76874 4.81355 4.85760 4.88824 4.91441 5.09332 5.15231 5.18636 5.21479 5.26616 5.31337 5.39272 5.44447 5.53040 5.61589 5.69143 5.73295 5.94028 6.18907 6.21317 6.29765 6.57765 6.64012 7.21070 7.41885 8.78428 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013651 B = 0.003867 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.670031 B = 7239.150948 C = 8329.402304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.088 4.088 4 H 0.075 0.925 5 C -0.152 4.152 6 C 0.088 3.912 7 H 0.075 0.925 8 C 0.106 3.894 9 N -0.717 5.717 10 C 0.530 3.470 11 O -0.586 6.586 12 C 0.024 3.976 13 H 0.074 0.926 14 C -0.502 4.502 15 H 0.039 0.961 16 C 0.040 3.960 17 N -0.928 5.928 18 Si 0.919 3.081 19 H -0.266 1.266 20 H -0.238 1.238 21 H -0.280 1.280 22 C -0.056 4.056 23 C -0.103 4.103 24 C -0.134 4.134 25 C -0.137 4.137 26 C -0.125 4.125 27 C -0.153 4.153 28 O -0.391 6.391 29 C 0.021 3.979 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.405 0.595 41 H 0.271 0.729 42 H 0.089 0.911 43 H 0.135 0.865 44 H 0.151 0.849 45 H 0.148 0.852 46 H 0.120 0.880 47 H 0.100 0.900 48 H 0.059 0.941 49 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.549 -3.552 6.738 13.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.107 4.107 4 H 0.094 0.906 5 C -0.209 4.209 6 C 0.030 3.970 7 H 0.093 0.907 8 C -0.018 4.018 9 N -0.368 5.368 10 C 0.318 3.682 11 O -0.467 6.467 12 C 0.003 3.997 13 H 0.092 0.908 14 C -0.540 4.540 15 H 0.057 0.943 16 C -0.160 4.160 17 N -0.565 5.565 18 Si 0.742 3.258 19 H -0.190 1.190 20 H -0.162 1.162 21 H -0.206 1.206 22 C -0.057 4.057 23 C -0.121 4.121 24 C -0.151 4.151 25 C -0.154 4.154 26 C -0.143 4.143 27 C -0.172 4.172 28 O -0.310 6.310 29 C -0.075 4.075 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.240 0.760 41 H 0.080 0.920 42 H 0.107 0.893 43 H 0.153 0.847 44 H 0.169 0.831 45 H 0.166 0.834 46 H 0.138 0.862 47 H 0.118 0.882 48 H 0.078 0.922 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -11.929 -2.891 6.880 14.071 hybrid contribution 1.048 -0.805 -0.239 1.343 sum -10.881 -3.696 6.641 13.272 Atomic orbital electron populations 1.21791 0.94723 1.02066 1.02117 1.21478 0.96774 0.94760 1.02108 1.21295 0.91774 0.98238 0.99387 0.90638 1.21968 1.02699 1.00144 0.96096 1.22448 0.96207 0.90831 0.87505 0.90709 1.21907 0.79827 0.98150 1.01899 1.45820 1.07020 1.09356 1.74616 1.21033 0.90791 0.83015 0.73347 1.90560 1.71398 1.32679 1.52069 1.18440 0.89483 0.92689 0.99095 0.90816 1.20434 1.08424 1.32913 0.92190 0.94269 1.25665 0.96626 0.94579 0.99166 1.69997 1.21165 1.37970 1.27409 0.86125 0.79839 0.78685 0.81143 1.19046 1.16215 1.20557 1.20099 0.96493 0.95335 0.93807 1.20813 0.99357 0.94084 0.97851 1.21360 0.99046 0.95471 0.99273 1.21352 0.99682 1.00617 0.93779 1.21360 1.00160 0.92703 1.00040 1.21240 1.00744 0.97760 0.97416 1.87894 1.61141 1.51367 1.30620 1.23058 0.90953 0.89762 1.03706 0.91984 0.92104 0.92828 0.91862 0.91887 0.90300 0.93035 0.92209 0.92234 0.91015 0.75985 0.92007 0.89307 0.84730 0.83133 0.83382 0.86226 0.88151 0.92236 0.94863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.67 71.98 0.70 -1.44 16 2 C -0.11 -1.95 5.33 30.60 0.16 -1.79 16 3 C -0.09 -1.79 2.19 -10.79 -0.02 -1.81 16 4 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 5 C -0.15 -2.85 8.60 71.98 0.62 -2.24 16 6 C 0.09 2.22 1.85 30.60 0.06 2.28 16 7 H 0.07 1.82 7.59 -2.39 -0.02 1.80 16 8 C 0.11 3.39 5.13 86.38 0.44 3.84 16 9 N -0.72 -27.47 5.40 -463.07 -2.50 -29.97 16 10 C 0.53 24.21 7.04 87.66 0.62 24.83 16 11 O -0.59 -29.26 15.38 -3.05 -0.05 -29.30 16 12 C 0.02 1.15 1.96 -13.03 -0.03 1.12 16 13 H 0.07 3.32 4.80 -2.39 -0.01 3.31 16 14 C -0.50 -26.80 8.04 25.60 0.21 -26.59 16 15 H 0.04 2.37 8.06 -2.91 -0.02 2.34 16 16 C 0.04 2.16 5.47 84.66 0.46 2.63 16 17 N -0.93 -53.72 13.96 21.45 0.30 -53.42 16 18 Si 0.92 40.35 27.34 68.60 1.88 42.22 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.24 -9.43 6.36 99.48 0.63 -8.79 16 21 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 22 C -0.06 -2.60 4.31 -19.87 -0.09 -2.69 16 23 C -0.10 -4.71 8.27 22.27 0.18 -4.53 16 24 C -0.13 -5.02 10.05 22.27 0.22 -4.80 16 25 C -0.14 -4.44 10.05 22.27 0.22 -4.21 16 26 C -0.12 -4.20 10.05 22.27 0.22 -3.98 16 27 C -0.15 -6.17 9.67 22.27 0.22 -5.95 16 28 O -0.39 -10.25 9.53 -148.98 -1.42 -11.67 16 29 C 0.02 0.47 10.66 113.37 1.21 1.68 16 30 H 0.06 0.81 6.57 -2.39 -0.02 0.80 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 1.17 7.54 -2.38 -0.02 1.15 16 35 H 0.08 1.21 6.56 -2.39 -0.02 1.19 16 36 H 0.05 1.09 6.32 -2.39 -0.02 1.08 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.06 2.04 8.13 -2.39 -0.02 2.02 16 39 H 0.07 2.32 6.17 -2.39 -0.01 2.31 16 40 H 0.40 14.79 6.90 -92.71 -0.64 14.15 16 41 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 42 H 0.09 4.41 7.92 -2.91 -0.02 4.39 16 43 H 0.13 4.25 8.06 -2.91 -0.02 4.22 16 44 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 45 H 0.15 3.79 8.06 -2.91 -0.02 3.76 16 46 H 0.12 4.37 7.95 -2.91 -0.02 4.35 16 47 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.06 1.08 8.09 -2.39 -0.02 1.06 16 49 H 0.03 0.80 6.78 -2.39 -0.02 0.79 16 Total: -1.00 -67.43 391.20 3.83 -63.60 By element: Atomic # 1 Polarization: 41.98 SS G_CDS: 0.22 Total: 42.19 kcal Atomic # 6 Polarization: -29.06 SS G_CDS: 5.41 Total: -23.65 kcal Atomic # 7 Polarization: -81.19 SS G_CDS: -2.20 Total: -83.39 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -1.47 Total: -40.97 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 1.88 Total: 42.22 kcal Total: -67.43 3.83 -63.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417453809.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.475 kcal (2) G-P(sol) polarization free energy of solvation -67.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds