Wall clock time and date at job start Tue Mar 31 2020 12:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47408 * 2 1 4 4 C 1.53000 * 109.47647 * 175.70846 * 3 2 1 5 5 H 1.08999 * 109.47072 * 306.14112 * 4 3 2 6 6 C 1.53004 * 109.47351 * 186.13464 * 4 3 2 7 7 N 1.46497 * 109.46792 * 179.97438 * 6 4 3 8 8 C 1.34780 * 119.99566 * 180.02562 * 7 6 4 9 9 O 1.21282 * 120.00229 * 359.97438 * 8 7 6 10 10 C 1.50697 * 119.99944 * 180.02562 * 8 7 6 11 11 H 1.09005 * 109.46473 * 299.99323 * 10 8 7 12 12 C 1.50694 * 109.47524 * 59.99466 * 10 8 7 13 13 H 1.08004 * 120.00182 * 26.20110 * 12 10 8 14 14 C 1.37879 * 120.00416 * 206.20193 * 12 10 8 15 15 N 1.31514 * 119.99651 * 358.97399 * 14 12 10 16 16 Si 1.86792 * 120.00381 * 178.97736 * 14 12 10 17 17 H 1.48507 * 109.47101 * 269.99655 * 16 14 12 18 18 H 1.48500 * 109.47331 * 29.99832 * 16 14 12 19 19 H 1.48504 * 109.47325 * 149.99653 * 16 14 12 20 20 C 1.50701 * 109.47166 * 179.97438 * 10 8 7 21 21 C 1.38235 * 119.99618 * 292.47071 * 20 10 8 22 22 C 1.38243 * 119.99771 * 179.79169 * 21 20 10 23 23 C 1.38232 * 119.99767 * 0.43860 * 22 21 20 24 24 C 1.38239 * 120.00428 * 359.81195 * 23 22 21 25 25 C 1.38234 * 120.00197 * 112.74737 * 20 10 8 26 26 O 1.42904 * 109.46807 * 66.13649 * 4 3 2 27 27 C 1.42888 * 114.00018 * 259.80660 * 26 4 3 28 28 C 1.53001 * 109.46943 * 178.54817 * 27 26 4 29 29 H 1.09000 * 109.47439 * 299.99849 * 1 2 3 30 30 H 1.09004 * 109.47134 * 60.00094 * 1 2 3 31 31 H 1.09005 * 109.47115 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47439 * 240.00151 * 2 1 3 33 33 H 1.08997 * 109.47396 * 120.00254 * 2 1 3 34 34 H 1.09007 * 109.46913 * 55.70810 * 3 2 1 35 35 H 1.09001 * 109.47319 * 295.71223 * 3 2 1 36 36 H 1.08999 * 109.46559 * 60.00368 * 6 4 3 37 37 H 1.08996 * 109.47078 * 300.00496 * 6 4 3 38 38 H 0.97000 * 120.00352 * 0.02562 * 7 6 4 39 39 H 0.97000 * 120.00433 * 354.54765 * 15 14 12 40 40 H 1.07997 * 119.99974 * 359.97438 * 21 20 10 41 41 H 1.07997 * 120.00012 * 180.27058 * 22 21 20 42 42 H 1.08001 * 120.00224 * 179.84029 * 23 22 21 43 43 H 1.07991 * 120.00024 * 180.02562 * 24 23 22 44 44 H 1.08001 * 119.99998 * 359.97438 * 25 20 10 45 45 H 1.08997 * 109.47521 * 298.54756 * 27 26 4 46 46 H 1.08995 * 109.47466 * 58.55019 * 27 26 4 47 47 H 1.09002 * 109.47408 * 60.00267 * 28 27 26 48 48 H 1.09011 * 109.47348 * 180.02562 * 28 27 26 49 49 H 1.08997 * 109.47660 * 299.99662 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5662 1.4439 0.1079 5 1 3.8695 0.8590 0.9763 6 6 4.0653 2.8820 0.2619 7 7 5.5266 2.8831 0.3658 8 6 6.1910 4.0470 0.5094 9 8 5.5791 5.0933 0.5521 10 6 7.6942 4.0483 0.6158 11 1 7.9974 3.4632 1.4840 12 6 8.2866 3.4423 -0.6303 13 1 7.7397 3.4784 -1.5609 14 6 9.5267 2.8416 -0.5824 15 7 10.2014 2.8154 0.5462 16 14 10.2485 2.0652 -2.1204 17 1 9.8366 0.6404 -2.1956 18 1 9.7526 2.7878 -3.3192 19 1 11.7302 2.1501 -2.0690 20 6 8.1858 5.4648 0.7675 21 6 8.0576 6.3568 -0.2807 22 6 8.5047 7.6574 -0.1401 23 6 9.0880 8.0633 1.0456 24 6 9.2209 7.1698 2.0920 25 6 8.7700 5.8705 1.9528 26 8 4.1277 0.8687 -1.0736 27 6 4.5308 -0.4938 -0.9217 28 6 5.0806 -1.0142 -2.2512 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6152 1.9780 0.8491 35 1 1.7408 1.9337 -0.9259 36 1 3.6369 3.3206 1.1631 37 1 3.7619 3.4668 -0.6065 38 1 6.0160 2.0464 0.3313 39 1 9.8639 3.2862 1.3242 40 1 7.6056 6.0385 -1.2084 41 1 8.4006 8.3556 -0.9574 42 1 9.4396 9.0786 1.1546 43 1 9.6763 7.4871 3.0184 44 1 8.8738 5.1724 2.7703 45 1 5.3049 -0.5606 -0.1573 46 1 3.6724 -1.0955 -0.6230 47 1 5.9390 -0.4125 -2.5499 48 1 5.3877 -2.0537 -2.1355 49 1 4.3065 -0.9475 -3.0157 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001461810110.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:29 Heat of formation + Delta-G solvation = -107.453376 kcal Electronic energy + Delta-G solvation = -27421.766208 eV Core-core repulsion = 23732.875481 eV Total energy + Delta-G solvation = -3688.890727 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.07052 -39.94440 -39.21054 -35.90723 -35.86488 -35.26228 -32.74793 -32.41877 -31.65113 -30.59646 -29.02705 -26.92374 -25.53624 -23.86173 -23.28689 -22.93949 -22.36876 -22.01711 -21.11480 -19.22597 -18.13681 -17.85386 -17.53300 -17.03065 -16.63638 -16.29669 -15.77403 -15.65900 -15.60168 -15.49275 -15.07158 -14.68486 -14.50180 -14.26758 -14.09009 -14.01124 -13.87215 -13.81037 -13.29144 -13.22594 -12.87376 -12.84182 -12.81505 -12.61561 -12.59556 -12.14074 -11.99863 -11.94566 -11.88620 -11.80487 -11.67249 -11.47104 -10.89630 -10.71288 -10.57303 -10.35017 -9.98873 -9.66828 -9.35292 -8.62545 -6.38730 0.64059 0.69702 1.53479 1.61366 1.78991 1.82648 2.41281 2.55277 2.68621 3.08569 3.20547 3.66478 3.92440 3.97368 4.09531 4.16829 4.20583 4.22557 4.25351 4.30304 4.34223 4.38208 4.44987 4.49989 4.52398 4.63082 4.65893 4.71823 4.82086 4.83546 4.89856 4.90245 4.96422 5.04950 5.05825 5.24493 5.25142 5.27686 5.30940 5.35055 5.43220 5.56717 5.67973 5.71608 5.73533 6.04694 6.14487 6.29998 6.31426 6.53301 6.65784 7.38124 7.41621 8.75823 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.011940 B = 0.004014 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.569522 B = 6973.567941 C = 8743.607155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.130 4.130 4 C 0.087 3.913 5 H 0.079 0.921 6 C 0.119 3.881 7 N -0.713 5.713 8 C 0.529 3.471 9 O -0.592 6.592 10 C 0.043 3.957 11 H 0.049 0.951 12 C -0.584 4.584 13 H 0.042 0.958 14 C -0.007 4.007 15 N -0.921 5.921 16 Si 1.108 2.892 17 H -0.265 1.265 18 H -0.281 1.281 19 H -0.286 1.286 20 C -0.047 4.047 21 C -0.109 4.109 22 C -0.134 4.134 23 C -0.140 4.140 24 C -0.126 4.126 25 C -0.150 4.150 26 O -0.396 6.396 27 C 0.047 3.953 28 C -0.152 4.152 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.050 0.950 38 H 0.407 0.593 39 H 0.264 0.736 40 H 0.091 0.909 41 H 0.137 0.863 42 H 0.151 0.849 43 H 0.144 0.856 44 H 0.110 0.890 45 H 0.045 0.955 46 H 0.072 0.928 47 H 0.044 0.956 48 H 0.090 0.910 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.741 -5.956 0.393 14.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.168 4.168 4 C 0.029 3.971 5 H 0.097 0.903 6 C -0.004 4.004 7 N -0.363 5.363 8 C 0.318 3.682 9 O -0.473 6.473 10 C 0.022 3.978 11 H 0.067 0.933 12 C -0.622 4.622 13 H 0.061 0.939 14 C -0.208 4.208 15 N -0.556 5.556 16 Si 0.931 3.069 17 H -0.190 1.190 18 H -0.207 1.207 19 H -0.212 1.212 20 C -0.048 4.048 21 C -0.127 4.127 22 C -0.152 4.152 23 C -0.157 4.157 24 C -0.144 4.144 25 C -0.168 4.168 26 O -0.316 6.316 27 C -0.029 4.029 28 C -0.209 4.209 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.242 0.758 39 H 0.075 0.925 40 H 0.109 0.891 41 H 0.155 0.845 42 H 0.169 0.831 43 H 0.162 0.838 44 H 0.128 0.872 45 H 0.064 0.936 46 H 0.090 0.910 47 H 0.063 0.937 48 H 0.109 0.891 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.901 -6.016 -0.301 13.339 hybrid contribution -0.937 0.457 0.695 1.252 sum -12.838 -5.559 0.393 13.995 Atomic orbital electron populations 1.21750 0.94794 1.02170 1.01987 1.21568 0.96775 0.95479 1.02192 1.21989 0.92617 0.98828 1.03333 1.22363 0.94199 0.91907 0.88625 0.90270 1.21583 0.80153 0.97293 1.01396 1.45716 1.07313 1.09196 1.74069 1.21105 0.90727 0.82990 0.73418 1.90547 1.70948 1.32840 1.53006 1.18089 0.88535 0.91820 0.99387 0.93350 1.21627 1.05450 1.40990 0.94100 0.93945 1.26953 0.94052 0.95613 1.04191 1.70843 1.41318 1.41200 1.02283 0.83022 0.75511 0.76746 0.71625 1.18982 1.20658 1.21211 1.20167 0.95845 0.95520 0.93263 1.20828 0.99812 0.94187 0.97867 1.21360 0.99426 0.95372 0.99000 1.21323 1.00747 1.00587 0.93093 1.21332 1.00094 0.92894 1.00057 1.21172 1.01409 0.97277 0.96948 1.87981 1.81277 1.27304 1.34997 1.22803 0.98868 0.82313 0.98867 1.21765 1.01160 1.01504 0.96447 0.92295 0.92933 0.91911 0.91898 0.91414 0.89667 0.91595 0.90386 0.93153 0.75814 0.92494 0.89096 0.84498 0.83138 0.83797 0.87215 0.93626 0.90988 0.93654 0.89146 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 71.98 0.71 -1.30 16 2 C -0.12 -1.93 4.87 30.59 0.15 -1.79 16 3 C -0.13 -2.50 4.91 30.59 0.15 -2.35 16 4 C 0.09 2.13 2.35 30.60 0.07 2.21 16 5 H 0.08 1.73 7.70 -2.39 -0.02 1.71 16 6 C 0.12 3.83 5.37 86.38 0.46 4.29 16 7 N -0.71 -28.01 5.35 -463.06 -2.48 -30.49 16 8 C 0.53 25.17 7.05 87.66 0.62 25.79 16 9 O -0.59 -30.64 15.48 -3.04 -0.05 -30.69 16 10 C 0.04 2.17 1.95 -13.03 -0.03 2.15 16 11 H 0.05 2.54 6.60 -2.38 -0.02 2.53 16 12 C -0.58 -31.15 7.40 25.60 0.19 -30.96 16 13 H 0.04 2.35 7.81 -2.91 -0.02 2.33 16 14 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 15 N -0.92 -52.38 13.59 21.45 0.29 -52.09 16 16 Si 1.11 48.43 29.90 68.60 2.05 50.48 16 17 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 18 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 19 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 20 C -0.05 -2.32 4.17 -19.87 -0.08 -2.40 16 21 C -0.11 -5.19 8.38 22.27 0.19 -5.00 16 22 C -0.13 -5.26 10.05 22.27 0.22 -5.04 16 23 C -0.14 -4.89 10.05 22.27 0.22 -4.67 16 24 C -0.13 -4.68 10.05 22.27 0.22 -4.46 16 25 C -0.15 -6.67 9.56 22.27 0.21 -6.45 16 26 O -0.40 -11.04 9.54 -148.98 -1.42 -12.46 16 27 C 0.05 1.06 6.06 71.98 0.44 1.50 16 28 C -0.15 -3.27 10.28 71.98 0.74 -2.53 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.06 1.06 6.50 -2.39 -0.02 1.04 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.41 15.57 8.23 -92.71 -0.76 14.81 16 39 H 0.26 15.12 6.57 -92.71 -0.61 14.51 16 40 H 0.09 4.59 7.84 -2.91 -0.02 4.57 16 41 H 0.14 4.46 8.06 -2.91 -0.02 4.44 16 42 H 0.15 3.96 8.06 -2.91 -0.02 3.93 16 43 H 0.14 4.24 8.06 -2.92 -0.02 4.21 16 44 H 0.11 4.68 7.96 -2.91 -0.02 4.66 16 45 H 0.05 1.04 8.13 -2.39 -0.02 1.02 16 46 H 0.07 1.26 5.87 -2.39 -0.01 1.24 16 47 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 49 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -67.86 400.00 3.67 -64.19 By element: Atomic # 1 Polarization: 41.66 SS G_CDS: 0.31 Total: 41.97 kcal Atomic # 6 Polarization: -35.87 SS G_CDS: 4.96 Total: -30.92 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -2.18 Total: -82.58 kcal Atomic # 8 Polarization: -41.68 SS G_CDS: -1.47 Total: -43.15 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 2.05 Total: 50.48 kcal Total: -67.86 3.67 -64.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461810110.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.264 kcal (2) G-P(sol) polarization free energy of solvation -67.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds