Wall clock time and date at job start Tue Mar 31 2020 14:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46902 * 2 1 4 4 H 1.08998 * 109.46850 * 305.00085 * 3 2 1 5 5 C 1.53000 * 109.47142 * 185.00352 * 3 2 1 6 6 C 1.52995 * 109.47229 * 174.99965 * 5 3 2 7 7 H 1.09000 * 109.46939 * 54.99929 * 6 5 3 8 8 C 1.52994 * 109.47105 * 294.99722 * 6 5 3 9 9 C 1.53002 * 109.47254 * 174.99675 * 6 5 3 10 10 O 1.42901 * 109.47378 * 184.99889 * 9 6 5 11 11 N 1.46501 * 109.47300 * 65.00101 * 3 2 1 12 12 C 1.34775 * 119.99922 * 275.00096 * 11 3 2 13 13 O 1.21285 * 119.99867 * 359.97438 * 12 11 3 14 14 C 1.50702 * 120.00105 * 179.97438 * 12 11 3 15 15 H 1.09001 * 109.46866 * 299.99947 * 14 12 11 16 16 C 1.50696 * 109.46833 * 59.99917 * 14 12 11 17 17 H 1.08000 * 120.00594 * 26.76811 * 16 14 12 18 18 C 1.37890 * 119.99853 * 206.77090 * 16 14 12 19 19 N 1.31506 * 119.99502 * 353.16963 * 18 16 14 20 20 Si 1.86791 * 119.99828 * 173.44390 * 18 16 14 21 21 H 1.48506 * 109.46956 * 179.72323 * 20 18 16 22 22 H 1.48496 * 109.47648 * 299.72338 * 20 18 16 23 23 H 1.48500 * 109.47195 * 59.72766 * 20 18 16 24 24 C 1.50701 * 109.47118 * 180.02562 * 14 12 11 25 25 C 1.38233 * 119.99898 * 292.99193 * 24 14 12 26 26 C 1.38234 * 119.99827 * 179.78986 * 25 24 14 27 27 C 1.38237 * 119.99744 * 0.44034 * 26 25 24 28 28 C 1.38233 * 120.00218 * 359.81241 * 27 26 25 29 29 C 1.38230 * 120.00070 * 359.97438 * 28 27 26 30 30 H 1.08997 * 109.46602 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47261 * 299.99847 * 1 2 3 32 32 H 1.09000 * 109.47005 * 59.99907 * 1 2 3 33 33 H 1.09001 * 109.47261 * 240.00153 * 2 1 3 34 34 H 1.09000 * 109.47322 * 119.99649 * 2 1 3 35 35 H 1.09005 * 109.46563 * 295.00037 * 5 3 2 36 36 H 1.08994 * 109.47437 * 54.99541 * 5 3 2 37 37 H 1.09000 * 109.47391 * 299.99930 * 8 6 5 38 38 H 1.08997 * 109.47611 * 60.00220 * 8 6 5 39 39 H 1.09005 * 109.47100 * 179.97438 * 8 6 5 40 40 H 1.09003 * 109.46919 * 305.00299 * 9 6 5 41 41 H 1.08998 * 109.47076 * 64.99867 * 9 6 5 42 42 H 0.96699 * 113.99883 * 179.97438 * 10 9 6 43 43 H 0.97000 * 119.99846 * 94.99570 * 11 3 2 44 44 H 0.96997 * 120.00962 * 354.83886 * 19 18 16 45 45 H 1.08003 * 120.00071 * 359.97438 * 25 24 14 46 46 H 1.07998 * 120.00251 * 180.26787 * 26 25 24 47 47 H 1.08001 * 119.99829 * 179.82988 * 27 26 25 48 48 H 1.07997 * 120.00019 * 180.02562 * 28 27 26 49 49 H 1.07997 * 120.00123 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4445 -0.1258 6 6 4.0644 2.8851 -0.2512 7 1 3.6970 3.4716 0.5909 8 6 3.5498 3.4914 -1.5582 9 6 5.5944 2.8962 -0.2515 10 8 6.0610 4.2468 -0.2513 11 7 1.6524 2.0976 1.2518 12 6 0.4351 2.6644 1.3670 13 8 -0.3393 2.6327 0.4341 14 6 0.0362 3.3377 2.6549 15 1 0.0672 2.6130 3.4684 16 6 0.9920 4.4649 2.9494 17 1 1.5097 4.9593 2.1407 18 6 1.2058 4.8651 4.2515 19 7 0.4791 4.3577 5.2229 20 14 2.5224 6.1336 4.6344 21 1 2.5476 6.3951 6.0961 22 1 3.8463 5.6196 4.2006 23 1 2.2198 7.3949 3.9112 24 6 -1.3617 3.8851 2.5235 25 6 -1.6165 4.9282 1.6529 26 6 -2.8996 5.4275 1.5292 27 6 -3.9261 4.8896 2.2828 28 6 -3.6703 3.8500 3.1572 29 6 -2.3881 3.3478 3.2777 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 4.0029 0.9837 0.7596 36 1 3.8570 0.8802 -1.0113 37 1 3.9171 2.9049 -2.4003 38 1 2.4598 3.4836 -1.5581 39 1 3.9053 4.5180 -1.6474 40 1 5.9616 2.3846 0.6382 41 1 5.9612 2.3852 -1.1417 42 1 7.0244 4.3301 -0.2511 43 1 2.2719 2.1232 1.9978 44 1 -0.2561 3.7593 5.0171 45 1 -0.8137 5.3512 1.0672 46 1 -3.0996 6.2395 0.8459 47 1 -4.9281 5.2815 2.1882 48 1 -4.4724 3.4295 3.7456 49 1 -2.1882 2.5358 3.9611 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001466041094.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:46 Heat of formation + Delta-G solvation = -95.152241 kcal Electronic energy + Delta-G solvation = -28300.119761 eV Core-core repulsion = 24611.762451 eV Total energy + Delta-G solvation = -3688.357309 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -39.63017 -38.31031 -37.45798 -35.92494 -33.94786 -33.41278 -31.70385 -30.77017 -30.01010 -28.37849 -26.98707 -26.41100 -23.76560 -23.43082 -21.66191 -21.41023 -20.35717 -19.79335 -19.46903 -17.46232 -17.22192 -16.15248 -15.94314 -15.73738 -15.29112 -14.76028 -14.39796 -14.08881 -13.95612 -13.80198 -13.71613 -13.25553 -13.03782 -12.85479 -12.59253 -12.49259 -12.34012 -12.15401 -12.01835 -11.72996 -11.56817 -11.40456 -11.10201 -10.94052 -10.84505 -10.77144 -10.64939 -10.48943 -10.28149 -10.22537 -10.18412 -10.12396 -9.96778 -8.95269 -8.72473 -8.59147 -8.28348 -8.00918 -7.62866 -6.52317 -4.29264 2.29984 2.35046 3.37972 3.39721 3.57745 3.68191 4.00694 4.14288 4.42751 4.78333 4.89121 4.92132 5.06487 5.19262 5.25378 5.34558 5.40671 5.47410 5.53870 5.67194 5.71241 5.71935 5.77275 5.81219 5.84942 5.92207 6.01215 6.10645 6.12413 6.20488 6.24050 6.26611 6.41694 6.44280 6.48939 6.50172 6.57512 6.65105 6.76907 6.89750 6.99735 7.24748 7.30567 7.37747 7.61239 7.61884 7.85267 7.97903 8.24266 8.36842 8.64676 9.22292 9.42722 10.85193 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009893 B = 0.005405 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2829.502801 B = 5178.802957 C = 6843.791880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.132 4.132 3 C 0.144 3.856 4 H 0.087 0.913 5 C -0.118 4.118 6 C -0.096 4.096 7 H 0.091 0.909 8 C -0.142 4.142 9 C 0.082 3.918 10 O -0.569 6.569 11 N -0.722 5.722 12 C 0.536 3.464 13 O -0.559 6.559 14 C 0.043 3.957 15 H 0.061 0.939 16 C -0.590 4.590 17 H 0.058 0.942 18 C 0.032 3.968 19 N -0.895 5.895 20 Si 1.064 2.936 21 H -0.282 1.282 22 H -0.284 1.284 23 H -0.286 1.286 24 C -0.018 4.018 25 C -0.077 4.077 26 C -0.132 4.132 27 C -0.147 4.147 28 C -0.129 4.129 29 C -0.128 4.128 30 H 0.038 0.962 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.046 0.954 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.043 0.957 41 H 0.040 0.960 42 H 0.374 0.626 43 H 0.402 0.598 44 H 0.274 0.726 45 H 0.112 0.888 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.107 0.893 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.336 -6.102 -8.755 12.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.039 3.961 4 H 0.105 0.895 5 C -0.156 4.156 6 C -0.114 4.114 7 H 0.109 0.891 8 C -0.199 4.199 9 C 0.004 3.996 10 O -0.374 6.374 11 N -0.374 5.374 12 C 0.325 3.675 13 O -0.438 6.438 14 C 0.022 3.978 15 H 0.079 0.921 16 C -0.628 4.628 17 H 0.076 0.924 18 C -0.175 4.175 19 N -0.529 5.529 20 Si 0.891 3.109 21 H -0.208 1.208 22 H -0.211 1.211 23 H -0.213 1.213 24 C -0.019 4.019 25 C -0.096 4.096 26 C -0.151 4.151 27 C -0.165 4.165 28 C -0.147 4.147 29 C -0.147 4.147 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.220 0.780 43 H 0.237 0.763 44 H 0.086 0.914 45 H 0.130 0.870 46 H 0.125 0.875 47 H 0.124 0.876 48 H 0.125 0.875 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.880 -5.219 -8.169 11.338 hybrid contribution 0.127 -0.873 -0.816 1.202 sum 6.007 -6.092 -8.985 12.407 Atomic orbital electron populations 1.21781 0.94870 0.99804 1.03560 1.21955 0.97216 0.96577 1.01299 1.20932 0.93101 0.92887 0.89198 0.89503 1.21834 0.95299 0.96150 1.02361 1.21141 0.92947 0.96730 1.00592 0.89066 1.21777 1.01324 1.00997 0.95823 1.22244 0.95218 0.83043 0.99079 1.86545 1.26311 1.26865 1.97666 1.45960 1.17591 1.58284 1.15605 1.21133 0.80304 0.75630 0.90421 1.90593 1.51756 1.59733 1.41694 1.18165 0.91039 0.97015 0.91630 0.92072 1.21556 1.26569 1.19144 0.95495 0.92418 1.25811 1.00253 0.99147 0.92259 1.70768 1.17888 1.29551 1.34690 0.83604 0.75257 0.75703 0.76289 1.20752 1.21077 1.21271 1.20127 0.94864 0.94008 0.92868 1.20788 0.95510 0.95657 0.97605 1.20982 0.93612 1.00295 1.00177 1.20812 0.98215 0.98539 0.98918 1.20872 0.96465 0.97890 0.99465 1.20961 0.92779 1.00436 1.00494 0.94339 0.91919 0.92393 0.92027 0.92252 0.91367 0.90923 0.93477 0.92222 0.92215 0.93824 0.94169 0.77970 0.76294 0.91436 0.87015 0.87491 0.87590 0.87482 0.87430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 8.52 37.16 0.32 -1.93 16 2 C -0.13 -1.76 5.61 -26.73 -0.15 -1.91 16 3 C 0.14 2.09 2.12 -67.93 -0.14 1.95 16 4 H 0.09 1.43 5.78 -51.93 -0.30 1.13 16 5 C -0.12 -1.38 4.22 -26.73 -0.11 -1.49 16 6 C -0.10 -1.26 2.57 -90.62 -0.23 -1.50 16 7 H 0.09 1.50 7.62 -51.93 -0.40 1.10 16 8 C -0.14 -1.92 8.85 37.15 0.33 -1.59 16 9 C 0.08 0.92 6.43 37.16 0.24 1.15 16 10 O -0.57 -7.04 13.20 -35.23 -0.46 -7.51 16 11 N -0.72 -12.63 4.30 -53.80 -0.23 -12.86 16 12 C 0.54 11.38 5.61 -10.99 -0.06 11.31 16 13 O -0.56 -12.79 12.60 5.55 0.07 -12.72 16 14 C 0.04 1.00 1.92 -94.08 -0.18 0.82 16 15 H 0.06 1.50 6.82 -51.93 -0.35 1.14 16 16 C -0.59 -14.85 7.43 -34.44 -0.26 -15.10 16 17 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 18 C 0.03 0.85 5.45 -17.82 -0.10 0.75 16 19 N -0.90 -24.90 13.56 55.43 0.75 -24.15 16 20 Si 1.06 23.81 29.91 -169.99 -5.08 18.73 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 24 C -0.02 -0.41 4.03 -104.62 -0.42 -0.83 16 25 C -0.08 -1.77 8.36 -39.58 -0.33 -2.11 16 26 C -0.13 -2.67 10.05 -39.58 -0.40 -3.07 16 27 C -0.15 -2.77 10.05 -39.58 -0.40 -3.17 16 28 C -0.13 -2.51 10.05 -39.59 -0.40 -2.91 16 29 C -0.13 -2.80 9.24 -39.58 -0.37 -3.17 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 1.17 5.65 -51.93 -0.29 0.87 16 32 H 0.06 0.97 7.85 -51.93 -0.41 0.57 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.90 6.46 -51.93 -0.34 0.56 16 39 H 0.06 0.86 7.82 -51.93 -0.41 0.45 16 40 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.37 2.76 9.12 45.56 0.42 3.17 16 43 H 0.40 6.89 8.49 -40.82 -0.35 6.55 16 44 H 0.27 7.57 6.29 -40.82 -0.26 7.31 16 45 H 0.11 2.63 7.86 -52.48 -0.41 2.22 16 46 H 0.11 1.86 8.06 -52.49 -0.42 1.43 16 47 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 48 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 49 H 0.11 2.22 7.96 -52.49 -0.42 1.81 16 LS Contribution 390.21 15.07 5.88 5.88 Total: -1.00 -30.50 390.21 -9.11 -39.61 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: -7.37 Total: 15.82 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: -2.66 Total: -22.80 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.52 Total: -37.02 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.39 Total: -20.22 kcal Atomic # 14 Polarization: 23.81 SS G_CDS: -5.08 Total: 18.73 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.50 -9.11 -39.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466041094.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.544 kcal (2) G-P(sol) polarization free energy of solvation -30.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds