Wall clock time and date at job start Tue Mar 31 2020 14:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46902 * 2 1 4 4 H 1.08998 * 109.46850 * 305.00085 * 3 2 1 5 5 C 1.53000 * 109.47142 * 185.00352 * 3 2 1 6 6 C 1.52995 * 109.47229 * 174.99965 * 5 3 2 7 7 H 1.09000 * 109.46939 * 54.99929 * 6 5 3 8 8 C 1.52994 * 109.47105 * 294.99722 * 6 5 3 9 9 C 1.53002 * 109.47254 * 174.99675 * 6 5 3 10 10 O 1.42901 * 109.47378 * 184.99889 * 9 6 5 11 11 N 1.46501 * 109.47300 * 65.00101 * 3 2 1 12 12 C 1.34775 * 119.99922 * 275.00096 * 11 3 2 13 13 O 1.21285 * 119.99867 * 359.97438 * 12 11 3 14 14 C 1.50702 * 120.00105 * 179.97438 * 12 11 3 15 15 H 1.09001 * 109.46866 * 299.99947 * 14 12 11 16 16 C 1.50696 * 109.46833 * 59.99917 * 14 12 11 17 17 H 1.08000 * 120.00594 * 26.76811 * 16 14 12 18 18 C 1.37890 * 119.99853 * 206.77090 * 16 14 12 19 19 N 1.31506 * 119.99502 * 353.16963 * 18 16 14 20 20 Si 1.86791 * 119.99828 * 173.44390 * 18 16 14 21 21 H 1.48506 * 109.46956 * 179.72323 * 20 18 16 22 22 H 1.48496 * 109.47648 * 299.72338 * 20 18 16 23 23 H 1.48500 * 109.47195 * 59.72766 * 20 18 16 24 24 C 1.50701 * 109.47118 * 180.02562 * 14 12 11 25 25 C 1.38233 * 119.99898 * 292.99193 * 24 14 12 26 26 C 1.38234 * 119.99827 * 179.78986 * 25 24 14 27 27 C 1.38237 * 119.99744 * 0.44034 * 26 25 24 28 28 C 1.38233 * 120.00218 * 359.81241 * 27 26 25 29 29 C 1.38230 * 120.00070 * 359.97438 * 28 27 26 30 30 H 1.08997 * 109.46602 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47261 * 299.99847 * 1 2 3 32 32 H 1.09000 * 109.47005 * 59.99907 * 1 2 3 33 33 H 1.09001 * 109.47261 * 240.00153 * 2 1 3 34 34 H 1.09000 * 109.47322 * 119.99649 * 2 1 3 35 35 H 1.09005 * 109.46563 * 295.00037 * 5 3 2 36 36 H 1.08994 * 109.47437 * 54.99541 * 5 3 2 37 37 H 1.09000 * 109.47391 * 299.99930 * 8 6 5 38 38 H 1.08997 * 109.47611 * 60.00220 * 8 6 5 39 39 H 1.09005 * 109.47100 * 179.97438 * 8 6 5 40 40 H 1.09003 * 109.46919 * 305.00299 * 9 6 5 41 41 H 1.08998 * 109.47076 * 64.99867 * 9 6 5 42 42 H 0.96699 * 113.99883 * 179.97438 * 10 9 6 43 43 H 0.97000 * 119.99846 * 94.99570 * 11 3 2 44 44 H 0.96997 * 120.00962 * 354.83886 * 19 18 16 45 45 H 1.08003 * 120.00071 * 359.97438 * 25 24 14 46 46 H 1.07998 * 120.00251 * 180.26787 * 26 25 24 47 47 H 1.08001 * 119.99829 * 179.82988 * 27 26 25 48 48 H 1.07997 * 120.00019 * 180.02562 * 28 27 26 49 49 H 1.07997 * 120.00123 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4445 -0.1258 6 6 4.0644 2.8851 -0.2512 7 1 3.6970 3.4716 0.5909 8 6 3.5498 3.4914 -1.5582 9 6 5.5944 2.8962 -0.2515 10 8 6.0610 4.2468 -0.2513 11 7 1.6524 2.0976 1.2518 12 6 0.4351 2.6644 1.3670 13 8 -0.3393 2.6327 0.4341 14 6 0.0362 3.3377 2.6549 15 1 0.0672 2.6130 3.4684 16 6 0.9920 4.4649 2.9494 17 1 1.5097 4.9593 2.1407 18 6 1.2058 4.8651 4.2515 19 7 0.4791 4.3577 5.2229 20 14 2.5224 6.1336 4.6344 21 1 2.5476 6.3951 6.0961 22 1 3.8463 5.6196 4.2006 23 1 2.2198 7.3949 3.9112 24 6 -1.3617 3.8851 2.5235 25 6 -1.6165 4.9282 1.6529 26 6 -2.8996 5.4275 1.5292 27 6 -3.9261 4.8896 2.2828 28 6 -3.6703 3.8500 3.1572 29 6 -2.3881 3.3478 3.2777 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 4.0029 0.9837 0.7596 36 1 3.8570 0.8802 -1.0113 37 1 3.9171 2.9049 -2.4003 38 1 2.4598 3.4836 -1.5581 39 1 3.9053 4.5180 -1.6474 40 1 5.9616 2.3846 0.6382 41 1 5.9612 2.3852 -1.1417 42 1 7.0244 4.3301 -0.2511 43 1 2.2719 2.1232 1.9978 44 1 -0.2561 3.7593 5.0171 45 1 -0.8137 5.3512 1.0672 46 1 -3.0996 6.2395 0.8459 47 1 -4.9281 5.2815 2.1882 48 1 -4.4724 3.4295 3.7456 49 1 -2.1882 2.5358 3.9611 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001466041094.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:45 Heat of formation + Delta-G solvation = -114.172663 kcal Electronic energy + Delta-G solvation = -28300.944548 eV Core-core repulsion = 24611.762451 eV Total energy + Delta-G solvation = -3689.182097 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.19604 -39.78645 -38.64203 -37.13590 -35.83905 -34.55797 -33.18422 -32.51572 -31.65121 -29.66406 -28.59727 -27.44366 -25.64243 -24.60218 -23.30536 -22.93303 -21.64549 -21.18929 -20.82134 -19.21671 -18.27919 -17.66977 -17.53963 -17.18866 -16.34328 -16.30418 -15.82185 -15.69808 -15.60815 -15.19904 -14.91957 -14.78192 -14.35724 -14.22723 -14.09344 -13.89143 -13.77634 -13.69629 -13.28313 -13.22183 -12.96696 -12.81326 -12.60895 -12.51134 -12.30609 -11.97861 -11.92447 -11.84374 -11.81856 -11.75414 -11.65333 -11.29781 -10.88763 -10.81986 -10.60712 -10.43090 -9.75823 -9.66216 -9.33654 -8.61121 -6.37271 0.64273 0.70741 1.54122 1.59074 1.78877 1.97671 2.55141 2.56295 3.09543 3.20653 3.27316 3.86683 3.94599 4.02725 4.09725 4.20204 4.21926 4.25042 4.30710 4.33834 4.38940 4.44165 4.52937 4.61272 4.67348 4.68141 4.72687 4.81765 4.83606 4.87565 4.90414 4.98402 5.02551 5.06785 5.11626 5.24557 5.27369 5.31530 5.40766 5.43322 5.48402 5.67738 5.71223 5.74169 5.84758 6.06125 6.16502 6.30417 6.55368 6.79952 6.98057 7.39919 7.58140 8.76489 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009893 B = 0.005405 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2829.502801 B = 5178.802957 C = 6843.791880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.125 4.125 3 C 0.140 3.860 4 H 0.065 0.935 5 C -0.107 4.107 6 C -0.098 4.098 7 H 0.049 0.951 8 C -0.136 4.136 9 C 0.084 3.916 10 O -0.597 6.597 11 N -0.711 5.711 12 C 0.536 3.464 13 O -0.580 6.580 14 C 0.042 3.958 15 H 0.042 0.958 16 C -0.582 4.582 17 H 0.043 0.957 18 C -0.008 4.008 19 N -0.921 5.921 20 Si 1.103 2.897 21 H -0.284 1.284 22 H -0.265 1.265 23 H -0.283 1.283 24 C -0.042 4.042 25 C -0.107 4.107 26 C -0.134 4.134 27 C -0.141 4.141 28 C -0.126 4.126 29 C -0.150 4.150 30 H 0.058 0.942 31 H 0.026 0.974 32 H 0.039 0.961 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.073 0.927 38 H 0.034 0.966 39 H 0.043 0.957 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.395 0.605 43 H 0.403 0.597 44 H 0.265 0.735 45 H 0.090 0.910 46 H 0.135 0.865 47 H 0.149 0.851 48 H 0.142 0.858 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.059 -7.019 -9.705 13.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.163 4.163 3 C 0.036 3.964 4 H 0.083 0.917 5 C -0.145 4.145 6 C -0.117 4.117 7 H 0.068 0.932 8 C -0.194 4.194 9 C 0.006 3.994 10 O -0.406 6.406 11 N -0.362 5.362 12 C 0.324 3.676 13 O -0.461 6.461 14 C 0.021 3.979 15 H 0.060 0.940 16 C -0.620 4.620 17 H 0.061 0.939 18 C -0.210 4.210 19 N -0.557 5.557 20 Si 0.926 3.074 21 H -0.210 1.210 22 H -0.190 1.190 23 H -0.209 1.209 24 C -0.043 4.043 25 C -0.125 4.125 26 C -0.152 4.152 27 C -0.159 4.159 28 C -0.144 4.144 29 C -0.169 4.169 30 H 0.077 0.923 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.113 0.887 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.124 0.876 37 H 0.092 0.908 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.244 0.756 43 H 0.238 0.762 44 H 0.076 0.924 45 H 0.108 0.892 46 H 0.153 0.847 47 H 0.167 0.833 48 H 0.160 0.840 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.647 -6.160 -9.140 12.871 hybrid contribution -0.173 -0.591 -0.594 0.855 sum 6.474 -6.751 -9.733 13.499 Atomic orbital electron populations 1.21714 0.96911 1.00190 1.00893 1.21932 0.95240 0.95745 1.03424 1.21160 0.95435 0.93133 0.86647 0.91705 1.21792 0.92474 0.95560 1.04646 1.21124 0.94980 0.97070 0.98516 0.93234 1.21715 0.99652 1.00706 0.97294 1.22248 0.93252 0.82911 1.00943 1.86493 1.28492 1.27783 1.97794 1.45909 1.16127 1.57305 1.16856 1.20761 0.81392 0.76015 0.89425 1.90564 1.52694 1.60820 1.41984 1.18093 0.91491 0.96186 0.92151 0.94011 1.21592 1.26318 1.19137 0.94905 0.93906 1.26906 1.01451 1.00193 0.92425 1.70853 1.18726 1.30944 1.35161 0.83095 0.74314 0.74084 0.75915 1.20965 1.19017 1.20919 1.20176 0.95161 0.94884 0.94102 1.20788 0.96592 0.96663 0.98468 1.21340 0.92669 1.00666 1.00502 1.21294 0.99727 0.97541 0.97348 1.21308 0.96189 0.97555 0.99353 1.21144 0.93874 1.01112 1.00742 0.92339 0.95491 0.94142 0.88665 0.91125 0.89762 0.87593 0.90812 0.94731 0.93802 0.92607 0.91455 0.75588 0.76165 0.92418 0.89164 0.84699 0.83310 0.84005 0.87516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.40 8.52 71.98 0.61 -3.79 16 2 C -0.13 -3.12 5.61 30.60 0.17 -2.95 16 3 C 0.14 4.02 2.12 44.99 0.10 4.11 16 4 H 0.06 2.19 5.78 -2.39 -0.01 2.17 16 5 C -0.11 -2.24 4.22 30.59 0.13 -2.11 16 6 C -0.10 -2.51 2.57 -10.80 -0.03 -2.54 16 7 H 0.05 1.68 7.62 -2.39 -0.02 1.66 16 8 C -0.14 -3.66 8.85 71.98 0.64 -3.02 16 9 C 0.08 1.67 6.43 71.98 0.46 2.14 16 10 O -0.60 -13.95 13.20 -148.98 -1.97 -15.92 16 11 N -0.71 -25.84 4.30 -442.52 -1.90 -27.74 16 12 C 0.54 24.11 5.61 87.66 0.49 24.60 16 13 O -0.58 -28.10 12.60 -3.04 -0.04 -28.14 16 14 C 0.04 2.09 1.92 -13.03 -0.02 2.07 16 15 H 0.04 2.20 6.82 -2.39 -0.02 2.18 16 16 C -0.58 -30.75 7.43 25.60 0.19 -30.56 16 17 H 0.04 2.34 7.82 -2.91 -0.02 2.32 16 18 C -0.01 -0.44 5.45 84.66 0.46 0.02 16 19 N -0.92 -52.97 13.56 21.45 0.29 -52.67 16 20 Si 1.10 48.90 29.91 68.60 2.05 50.95 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 23 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 24 C -0.04 -2.07 4.03 -19.87 -0.08 -2.15 16 25 C -0.11 -5.08 8.36 22.27 0.19 -4.90 16 26 C -0.13 -5.31 10.05 22.27 0.22 -5.09 16 27 C -0.14 -5.02 10.05 22.27 0.22 -4.80 16 28 C -0.13 -4.76 10.05 22.27 0.22 -4.53 16 29 C -0.15 -6.74 9.24 22.27 0.21 -6.53 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.03 1.02 5.65 -2.39 -0.01 1.01 16 32 H 0.04 1.38 7.85 -2.39 -0.02 1.36 16 33 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.03 1.07 6.46 -2.39 -0.02 1.06 16 39 H 0.04 1.28 7.82 -2.38 -0.02 1.27 16 40 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.39 5.08 9.12 -74.06 -0.68 4.41 16 43 H 0.40 14.34 8.49 -92.71 -0.79 13.56 16 44 H 0.27 15.34 6.29 -92.71 -0.58 14.75 16 45 H 0.09 4.54 7.86 -2.91 -0.02 4.52 16 46 H 0.14 4.47 8.06 -2.91 -0.02 4.44 16 47 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 48 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 49 H 0.11 4.63 7.96 -2.91 -0.02 4.61 16 Total: -1.00 -70.42 390.21 2.28 -68.14 By element: Atomic # 1 Polarization: 45.75 SS G_CDS: -0.33 Total: 45.42 kcal Atomic # 6 Polarization: -44.21 SS G_CDS: 4.18 Total: -40.03 kcal Atomic # 7 Polarization: -78.81 SS G_CDS: -1.61 Total: -80.42 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -2.00 Total: -44.06 kcal Atomic # 14 Polarization: 48.90 SS G_CDS: 2.05 Total: 50.95 kcal Total: -70.42 2.28 -68.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466041094.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.035 kcal (2) G-P(sol) polarization free energy of solvation -70.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds