Wall clock time and date at job start Tue Mar 31 2020 14:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47260 * 2 1 4 4 H 1.09000 * 109.47221 * 302.13681 * 3 2 1 5 5 C 1.52995 * 109.47302 * 182.13865 * 3 2 1 6 6 C 1.53001 * 109.47424 * 174.99989 * 5 3 2 7 7 H 1.09002 * 109.46999 * 54.99867 * 6 5 3 8 8 C 1.53001 * 109.47078 * 295.00057 * 6 5 3 9 9 C 1.52998 * 109.47177 * 175.00165 * 6 5 3 10 10 O 1.42904 * 109.46730 * 184.99752 * 9 6 5 11 11 N 1.46498 * 109.47335 * 62.13851 * 3 2 1 12 12 C 1.34781 * 120.00015 * 268.64747 * 11 3 2 13 13 O 1.21281 * 119.99953 * 355.93803 * 12 11 3 14 14 C 1.50705 * 120.00061 * 175.93328 * 12 11 3 15 15 H 1.09004 * 109.46727 * 36.23939 * 14 12 11 16 16 C 1.50695 * 109.47330 * 276.23786 * 14 12 11 17 17 H 1.08005 * 120.00016 * 334.90184 * 16 14 12 18 18 C 1.37875 * 120.00128 * 154.89824 * 16 14 12 19 19 N 1.31515 * 120.00393 * 186.74439 * 18 16 14 20 20 Si 1.86807 * 119.99870 * 6.74769 * 18 16 14 21 21 H 1.48501 * 109.46643 * 84.35401 * 20 18 16 22 22 H 1.48496 * 109.46946 * 204.34628 * 20 18 16 23 23 H 1.48498 * 109.47059 * 324.35339 * 20 18 16 24 24 C 1.50698 * 109.47262 * 156.23637 * 14 12 11 25 25 C 1.38238 * 119.99891 * 70.17140 * 24 14 12 26 26 C 1.38232 * 119.99901 * 179.78684 * 25 24 14 27 27 C 1.38231 * 120.00192 * 0.44899 * 26 25 24 28 28 C 1.38241 * 119.99835 * 359.80855 * 27 26 25 29 29 C 1.38228 * 119.99994 * 359.97438 * 28 27 26 30 30 H 1.08999 * 109.47015 * 56.24762 * 1 2 3 31 31 H 1.08998 * 109.47064 * 176.24433 * 1 2 3 32 32 H 1.09003 * 109.47108 * 296.24592 * 1 2 3 33 33 H 1.08995 * 109.47182 * 239.99513 * 2 1 3 34 34 H 1.08999 * 109.46884 * 119.99720 * 2 1 3 35 35 H 1.09003 * 109.47018 * 54.99828 * 5 3 2 36 36 H 1.08999 * 109.47049 * 294.99946 * 5 3 2 37 37 H 1.08997 * 109.47372 * 180.02562 * 8 6 5 38 38 H 1.09002 * 109.47051 * 299.99779 * 8 6 5 39 39 H 1.09004 * 109.46886 * 59.99549 * 8 6 5 40 40 H 1.08993 * 109.47013 * 304.99667 * 9 6 5 41 41 H 1.08999 * 109.47091 * 64.99999 * 9 6 5 42 42 H 0.96705 * 114.00061 * 179.97438 * 10 9 6 43 43 H 0.97003 * 120.00123 * 88.64829 * 11 3 2 44 44 H 0.96997 * 120.00103 * 180.02562 * 19 18 16 45 45 H 1.08001 * 119.99515 * 0.02562 * 25 24 14 46 46 H 1.07997 * 119.99954 * 180.27940 * 26 25 24 47 47 H 1.07998 * 120.00093 * 179.82932 * 27 26 25 48 48 H 1.08000 * 120.00034 * 179.97438 * 28 27 26 49 49 H 1.08004 * 120.00161 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6458 1.9672 -0.8702 5 6 3.5690 1.4428 -0.0538 6 6 4.0747 2.8813 -0.1795 7 1 3.6683 3.4817 0.6344 8 6 3.6224 3.4657 -1.5193 9 6 5.6029 2.8928 -0.1081 10 8 6.0696 4.2436 -0.1083 11 7 1.5943 2.1180 1.2211 12 6 0.4293 2.7958 1.2293 13 8 -0.2138 2.9087 0.2073 14 6 -0.0743 3.4132 2.5086 15 1 0.7695 3.7901 3.0867 16 6 -0.8098 2.3727 3.3130 17 1 -1.2581 1.5243 2.8174 18 6 -0.9105 2.5038 4.6819 19 7 -1.4346 1.5337 5.3986 20 14 -0.3025 4.0595 5.5184 21 1 -1.3656 5.0952 5.4701 22 1 0.0340 3.7613 6.9337 23 1 0.9071 4.5586 4.8164 24 6 -1.0085 4.5502 2.1839 25 6 -2.2526 4.2889 1.6407 26 6 -3.1113 5.3315 1.3469 27 6 -2.7225 6.6360 1.5877 28 6 -1.4763 6.8976 2.1259 29 6 -0.6194 5.8547 2.4239 30 1 -0.3633 0.5710 -0.8544 31 1 -0.3633 -1.0254 -0.0673 32 1 -0.3633 0.4545 0.9217 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.9024 0.8639 -0.9152 36 1 3.9648 0.9970 0.8587 37 1 3.9830 4.4903 -1.6091 38 1 4.0288 2.8653 -2.3332 39 1 2.5336 3.4574 -1.5702 40 1 5.9276 2.3964 0.8063 41 1 6.0110 2.3673 -0.9714 42 1 7.0320 4.3272 -0.0642 43 1 2.1375 2.0776 2.0237 44 1 -1.5058 1.6261 6.3616 45 1 -2.5550 3.2699 1.4494 46 1 -4.0850 5.1271 0.9268 47 1 -3.3924 7.4507 1.3556 48 1 -1.1724 7.9168 2.3137 49 1 0.3541 6.0591 2.8448 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001466041095.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:50 Heat of formation + Delta-G solvation = -110.241251 kcal Electronic energy + Delta-G solvation = -28218.805734 eV Core-core repulsion = 24529.794116 eV Total energy + Delta-G solvation = -3689.011618 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.15959 -39.78326 -38.62232 -37.14370 -35.46093 -34.57317 -33.48749 -32.84761 -31.63454 -29.80741 -28.94933 -27.43441 -25.58189 -24.56954 -23.36524 -22.91327 -21.61542 -20.99818 -20.83320 -19.07256 -18.29958 -17.85139 -17.59859 -17.05947 -16.42664 -16.36033 -16.01848 -15.80341 -15.34910 -15.15145 -14.86281 -14.78202 -14.45359 -14.29625 -14.10583 -14.05587 -13.78619 -13.72144 -13.40055 -13.22647 -12.98764 -12.89607 -12.71499 -12.49355 -12.27624 -12.06691 -11.97588 -11.80612 -11.76972 -11.67456 -11.61479 -11.40675 -11.27301 -10.85589 -10.80791 -10.42798 -9.76617 -9.64954 -9.37435 -8.34796 -6.40906 0.61441 0.69395 1.30402 1.38528 1.42171 2.00365 2.29415 2.54881 2.98769 3.14168 3.28058 3.89682 3.96139 4.04437 4.10051 4.21804 4.25026 4.27637 4.31585 4.35302 4.40874 4.43315 4.54786 4.60634 4.64336 4.69889 4.74695 4.80502 4.85172 4.90201 4.91807 5.00437 5.04791 5.09939 5.14878 5.21123 5.29711 5.33164 5.40633 5.42261 5.44788 5.49161 5.67751 5.73658 5.84064 5.96610 6.21356 6.29425 6.61969 6.81181 6.97896 7.23092 7.58346 8.79919 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010446 B = 0.004736 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.751213 B = 5910.682620 C = 6303.409214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.125 4.125 3 C 0.141 3.859 4 H 0.074 0.926 5 C -0.109 4.109 6 C -0.094 4.094 7 H 0.055 0.945 8 C -0.139 4.139 9 C 0.083 3.917 10 O -0.596 6.596 11 N -0.716 5.716 12 C 0.542 3.458 13 O -0.578 6.578 14 C 0.025 3.975 15 H 0.068 0.932 16 C -0.492 4.492 17 H 0.034 0.966 18 C 0.037 3.963 19 N -0.932 5.932 20 Si 0.920 3.080 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.232 1.232 24 C -0.064 4.064 25 C -0.093 4.093 26 C -0.138 4.138 27 C -0.135 4.135 28 C -0.128 4.128 29 C -0.154 4.154 30 H 0.041 0.959 31 H 0.055 0.945 32 H 0.023 0.977 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.046 0.954 38 H 0.069 0.931 39 H 0.036 0.964 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.395 0.605 43 H 0.404 0.596 44 H 0.269 0.731 45 H 0.089 0.911 46 H 0.133 0.867 47 H 0.150 0.850 48 H 0.148 0.852 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.021 3.749 -9.975 17.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.163 4.163 3 C 0.036 3.964 4 H 0.092 0.908 5 C -0.146 4.146 6 C -0.113 4.113 7 H 0.073 0.927 8 C -0.196 4.196 9 C 0.006 3.994 10 O -0.405 6.405 11 N -0.367 5.367 12 C 0.330 3.670 13 O -0.458 6.458 14 C 0.003 3.997 15 H 0.086 0.914 16 C -0.530 4.530 17 H 0.052 0.948 18 C -0.163 4.163 19 N -0.571 5.571 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.156 1.156 24 C -0.065 4.065 25 C -0.112 4.112 26 C -0.156 4.156 27 C -0.152 4.152 28 C -0.146 4.146 29 C -0.172 4.172 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.042 0.958 33 H 0.113 0.887 34 H 0.086 0.914 35 H 0.121 0.879 36 H 0.103 0.897 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.245 0.755 43 H 0.239 0.761 44 H 0.078 0.922 45 H 0.108 0.892 46 H 0.151 0.849 47 H 0.168 0.832 48 H 0.166 0.834 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 12.900 3.852 -10.566 17.114 hybrid contribution 0.267 -0.026 1.272 1.300 sum 13.167 3.826 -9.294 16.565 Atomic orbital electron populations 1.21670 0.97543 1.00384 1.00504 1.21906 0.94740 0.96418 1.03261 1.21144 0.94944 0.92489 0.87779 0.90823 1.21807 0.92237 0.95896 1.04706 1.21097 0.94923 0.96850 0.98394 0.92694 1.21742 1.00026 1.00842 0.97028 1.22243 0.93336 0.82928 1.00918 1.86467 1.28700 1.27672 1.97637 1.45921 1.22307 1.53490 1.14985 1.20596 0.80099 0.76779 0.89503 1.90550 1.57669 1.62112 1.35491 1.18429 0.95423 0.93119 0.92696 0.91395 1.20377 1.35058 1.06303 0.91240 0.94759 1.25619 0.94625 0.98495 0.97577 1.70001 1.46392 1.33697 1.06993 0.86138 0.80868 0.80636 0.77889 1.19856 1.21111 1.15575 1.20185 0.95823 0.94312 0.96199 1.20857 0.94195 0.98414 0.97712 1.21380 0.99855 0.93264 1.01064 1.21353 0.97069 0.96557 1.00261 1.21363 0.94386 0.99358 0.99460 1.21294 1.00634 0.92508 1.02762 0.93979 0.92633 0.95789 0.88696 0.91365 0.87903 0.89680 0.93488 0.91208 0.94494 0.92437 0.91851 0.75547 0.76131 0.92199 0.89227 0.84946 0.83236 0.83411 0.85998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.09 8.65 71.98 0.62 -4.47 16 2 C -0.12 -3.36 5.63 30.59 0.17 -3.19 16 3 C 0.14 3.91 2.14 44.99 0.10 4.00 16 4 H 0.07 2.38 5.53 -2.39 -0.01 2.37 16 5 C -0.11 -2.06 4.26 30.59 0.13 -1.93 16 6 C -0.09 -2.03 2.57 -10.79 -0.03 -2.06 16 7 H 0.05 1.49 7.62 -2.39 -0.02 1.48 16 8 C -0.14 -3.29 8.85 71.98 0.64 -2.65 16 9 C 0.08 1.36 6.43 71.98 0.46 1.83 16 10 O -0.60 -11.33 13.19 -148.98 -1.97 -13.30 16 11 N -0.72 -24.60 4.21 -442.54 -1.87 -26.47 16 12 C 0.54 23.54 5.35 87.66 0.47 24.01 16 13 O -0.58 -27.76 13.61 -3.03 -0.04 -27.80 16 14 C 0.03 1.17 1.87 -13.03 -0.02 1.14 16 15 H 0.07 2.99 5.57 -2.38 -0.01 2.98 16 16 C -0.49 -27.02 8.05 25.60 0.21 -26.81 16 17 H 0.03 2.16 7.88 -2.91 -0.02 2.14 16 18 C 0.04 2.04 5.47 84.65 0.46 2.51 16 19 N -0.93 -55.92 13.96 21.45 0.30 -55.62 16 20 Si 0.92 42.48 26.09 68.60 1.79 44.26 16 21 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 22 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 23 H -0.23 -9.50 6.15 99.48 0.61 -8.89 16 24 C -0.06 -2.93 3.65 -19.87 -0.07 -3.00 16 25 C -0.09 -4.32 8.13 22.27 0.18 -4.14 16 26 C -0.14 -5.24 10.05 22.27 0.22 -5.01 16 27 C -0.13 -4.40 10.05 22.27 0.22 -4.18 16 28 C -0.13 -4.28 10.05 22.27 0.22 -4.06 16 29 C -0.15 -6.08 8.79 22.27 0.20 -5.88 16 30 H 0.04 1.57 7.80 -2.39 -0.02 1.55 16 31 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.02 1.04 6.41 -2.39 -0.02 1.02 16 33 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.05 1.19 7.82 -2.39 -0.02 1.18 16 38 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.04 1.04 6.46 -2.38 -0.02 1.03 16 40 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.40 3.59 9.12 -74.05 -0.68 2.91 16 43 H 0.40 12.64 8.67 -92.71 -0.80 11.84 16 44 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 45 H 0.09 4.60 7.73 -2.91 -0.02 4.58 16 46 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 47 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 48 H 0.15 3.77 8.06 -2.91 -0.02 3.74 16 49 H 0.12 4.37 7.97 -2.91 -0.02 4.34 16 Total: -1.00 -73.31 387.60 1.77 -71.54 By element: Atomic # 1 Polarization: 41.90 SS G_CDS: -0.63 Total: 41.27 kcal Atomic # 6 Polarization: -38.08 SS G_CDS: 4.18 Total: -33.89 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -1.57 Total: -82.09 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: -2.01 Total: -41.10 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 1.79 Total: 44.26 kcal Total: -73.31 1.77 -71.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466041095.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.697 kcal (2) G-P(sol) polarization free energy of solvation -73.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds