Wall clock time and date at job start Tue Mar 31 2020 14:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46865 * 2 1 4 4 H 1.08993 * 109.47242 * 304.99619 * 3 2 1 5 5 C 1.52998 * 109.47136 * 65.00583 * 3 2 1 6 6 C 1.53004 * 109.46689 * 185.00053 * 3 2 1 7 7 H 1.08999 * 109.46970 * 60.00591 * 6 3 2 8 8 C 1.53003 * 109.47107 * 180.02562 * 6 3 2 9 9 N 1.46493 * 109.47496 * 180.16324 * 8 6 3 10 10 C 1.34772 * 120.00497 * 182.39190 * 9 8 6 11 11 O 1.21288 * 119.99869 * 0.02562 * 10 9 8 12 12 C 1.50702 * 120.00422 * 179.72351 * 10 9 8 13 13 C 1.50695 * 109.47018 * 180.27547 * 12 10 9 14 14 C 1.37636 * 120.12958 * 264.99515 * 13 12 10 15 15 C 1.38607 * 120.25088 * 179.97438 * 14 13 12 16 16 C 1.38657 * 120.50406 * 0.02823 * 15 14 13 17 17 C 1.37604 * 120.24656 * 0.02562 * 16 15 14 18 18 C 1.40697 * 120.12603 * 84.73073 * 13 12 10 19 19 C 1.41392 * 120.24634 * 359.97438 * 18 13 12 20 20 H 1.08001 * 120.00091 * 334.24371 * 19 18 13 21 21 C 1.39954 * 119.99892 * 154.24139 * 19 18 13 22 22 N 1.30817 * 120.00204 * 341.50546 * 21 19 18 23 23 Si 1.86799 * 119.99875 * 161.50908 * 21 19 18 24 24 H 1.48503 * 109.47128 * 59.99695 * 23 21 19 25 25 H 1.48492 * 109.47308 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47270 * 300.00002 * 23 21 19 27 27 O 1.42898 * 109.47202 * 300.00055 * 6 3 2 28 28 C 1.42903 * 113.99688 * 119.11798 * 27 6 3 29 29 H 1.08998 * 109.46850 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46598 * 299.99422 * 1 2 3 31 31 H 1.08997 * 109.46758 * 59.99743 * 1 2 3 32 32 H 1.09004 * 109.46967 * 240.00045 * 2 1 3 33 33 H 1.08998 * 109.47254 * 120.00432 * 2 1 3 34 34 H 1.08998 * 109.47214 * 179.97438 * 5 3 2 35 35 H 1.09004 * 109.46642 * 299.99687 * 5 3 2 36 36 H 1.09003 * 109.47290 * 59.99474 * 5 3 2 37 37 H 1.09001 * 109.47050 * 60.15701 * 8 6 3 38 38 H 1.09002 * 109.46747 * 300.16350 * 8 6 3 39 39 H 0.97006 * 119.99652 * 2.38751 * 9 8 6 40 40 H 1.08997 * 109.47079 * 300.27736 * 12 10 9 41 41 H 1.08997 * 109.46690 * 60.27330 * 12 10 9 42 42 H 1.07997 * 119.87388 * 0.02562 * 14 13 12 43 43 H 1.08000 * 119.75301 * 180.02562 * 15 14 13 44 44 H 1.08003 * 119.88219 * 179.97438 * 16 15 14 45 45 H 1.08000 * 120.12863 * 179.97438 * 17 16 15 46 46 H 0.96999 * 120.00388 * 180.02562 * 22 21 19 47 47 H 1.09003 * 109.46600 * 179.39561 * 28 27 6 48 48 H 1.09002 * 109.47051 * 299.38522 * 28 27 6 49 49 H 1.08995 * 109.47516 * 59.39556 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5649 1.4443 -0.1257 7 1 3.8532 0.9570 -1.0572 8 6 4.0750 2.8868 -0.1251 9 7 5.5346 2.8887 -0.2494 10 6 6.2117 4.0536 -0.2226 11 8 5.6127 5.1005 -0.0951 12 6 7.7139 4.0552 -0.3442 13 6 8.2216 5.4725 -0.2791 14 6 8.4563 6.1762 -1.4384 15 6 8.9229 7.4802 -1.3814 16 6 9.1590 8.0904 -0.1590 17 6 8.9325 7.4056 1.0128 18 6 8.4524 6.0834 0.9672 19 6 8.2090 5.3723 2.1648 20 1 7.4890 4.5674 2.1782 21 6 8.9012 5.7116 3.3329 22 7 10.0044 6.4109 3.2599 23 14 8.2499 5.1657 4.9964 24 1 8.1802 3.6829 5.0384 25 1 9.1589 5.6485 6.0667 26 1 6.8929 5.7311 5.2065 27 8 4.1346 0.7376 0.9778 28 6 4.9003 -0.4087 0.6010 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.9990 3.1540 1.3076 35 1 0.5490 2.1251 1.3970 36 1 2.0700 1.5874 2.1492 37 1 3.7890 3.3728 0.8077 38 1 3.6381 3.4270 -0.9650 39 1 6.0138 2.0514 -0.3510 40 1 8.1451 3.4768 0.4728 41 1 8.0017 3.6094 -1.2963 42 1 8.2755 5.7109 -2.3961 43 1 9.1039 8.0251 -2.2962 44 1 9.5229 9.1068 -0.1263 45 1 9.1174 7.8826 1.9640 46 1 10.4843 6.6457 4.0694 47 1 5.3072 -0.8833 1.4940 48 1 4.2601 -1.1159 0.0736 49 1 5.7174 -0.1014 -0.0516 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649826081.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:07 Heat of formation + Delta-G solvation = -87.881465 kcal Electronic energy + Delta-G solvation = -27270.826823 eV Core-core repulsion = 23582.784798 eV Total energy + Delta-G solvation = -3688.042025 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -39.67097 -38.65155 -37.19269 -35.68702 -34.09380 -33.56294 -31.74411 -30.81165 -29.40591 -28.15510 -26.91551 -26.27593 -25.31965 -24.66845 -22.00717 -20.88464 -20.58512 -20.02483 -19.18660 -17.13927 -16.86678 -16.46890 -16.18413 -15.48395 -15.30716 -14.94736 -14.65800 -14.56045 -14.30928 -13.96952 -13.59179 -13.47594 -13.43848 -12.92138 -12.79268 -12.59822 -12.48800 -12.10990 -11.86648 -11.83873 -11.67295 -11.51118 -11.21641 -11.19686 -11.09289 -10.93864 -10.90874 -10.76990 -10.63566 -10.59805 -10.35658 -9.69326 -9.41852 -9.32377 -9.09051 -9.04631 -8.61572 -7.25900 -7.23413 -6.69531 -4.27282 2.86019 3.03266 3.10741 3.15459 3.34126 3.42213 3.59851 3.69399 3.99556 4.48584 4.63678 4.69041 4.71609 4.88633 4.99267 5.15701 5.22200 5.27413 5.32832 5.45849 5.48572 5.53651 5.55679 5.67429 5.74756 5.82183 5.84001 5.88604 5.90809 6.01334 6.09915 6.17921 6.23742 6.31151 6.33981 6.49422 6.56463 6.84612 6.86902 7.04858 7.14901 7.34825 7.47980 7.70242 7.94847 8.02524 8.14063 8.18846 8.37782 8.70861 8.94750 8.98023 9.07896 10.25273 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013442 B = 0.003467 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.574883 B = 8073.920903 C = 9271.229285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.097 4.097 4 H 0.080 0.920 5 C -0.149 4.149 6 C 0.083 3.917 7 H 0.067 0.933 8 C 0.110 3.890 9 N -0.741 5.741 10 C 0.514 3.486 11 O -0.521 6.521 12 C -0.070 4.070 13 C -0.181 4.181 14 C -0.081 4.081 15 C -0.242 4.242 16 C -0.106 4.106 17 C -0.161 4.161 18 C 0.130 3.870 19 C -0.457 4.457 20 H 0.075 0.925 21 C 0.079 3.921 22 N -0.794 5.794 23 Si 0.901 3.099 24 H -0.266 1.266 25 H -0.279 1.279 26 H -0.264 1.264 27 O -0.371 6.371 28 C 0.029 3.971 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.392 0.608 40 H 0.095 0.905 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.114 0.886 46 H 0.280 0.720 47 H 0.086 0.914 48 H 0.039 0.961 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.998 -14.648 -5.010 19.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.117 4.117 4 H 0.098 0.902 5 C -0.206 4.206 6 C 0.024 3.976 7 H 0.085 0.915 8 C -0.014 4.014 9 N -0.396 5.396 10 C 0.302 3.698 11 O -0.395 6.395 12 C -0.110 4.110 13 C -0.183 4.183 14 C -0.099 4.099 15 C -0.261 4.261 16 C -0.125 4.125 17 C -0.180 4.180 18 C 0.128 3.872 19 C -0.486 4.486 20 H 0.093 0.907 21 C -0.139 4.139 22 N -0.419 5.419 23 Si 0.726 3.274 24 H -0.190 1.190 25 H -0.204 1.204 26 H -0.188 1.188 27 O -0.290 6.290 28 C -0.068 4.068 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.225 0.775 40 H 0.114 0.886 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.132 0.868 46 H 0.091 0.909 47 H 0.104 0.896 48 H 0.058 0.942 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -12.267 -13.699 -4.566 18.947 hybrid contribution 0.068 -0.753 0.457 0.883 sum -12.199 -14.452 -4.108 19.353 Atomic orbital electron populations 1.21816 0.95812 1.01404 1.02000 1.21519 0.95891 0.96028 1.01988 1.21431 0.93516 0.96996 0.99712 0.90200 1.21865 1.00760 1.00872 0.97074 1.22459 0.93224 0.92183 0.89698 0.91518 1.21645 0.81568 0.95379 1.02814 1.46023 1.06736 1.09311 1.77513 1.21222 0.90747 0.82778 0.75080 1.90679 1.70453 1.31441 1.46929 1.20257 0.90055 0.98379 1.02317 1.19044 1.11905 0.93790 0.93551 1.20289 0.99493 0.94527 0.95590 1.20285 1.13395 0.96464 0.95956 1.20661 1.00675 0.97725 0.93433 1.21249 1.05316 0.94806 0.96662 1.17325 0.87716 0.90965 0.91222 1.19448 1.20156 1.16023 0.93011 0.90739 1.25870 0.93393 0.93519 1.01104 1.69823 1.11515 1.29680 1.30900 0.86478 0.80042 0.79944 0.80943 1.19038 1.20390 1.18835 1.87994 1.68488 1.41158 1.31358 1.22876 0.94496 0.88051 1.01381 0.92987 0.92300 0.92864 0.92561 0.91325 0.92130 0.92731 0.91729 0.90482 0.91213 0.77502 0.88639 0.90800 0.89832 0.89716 0.89626 0.86765 0.90934 0.89564 0.94202 0.94106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.67 37.16 0.36 -0.72 16 2 C -0.12 -0.92 5.19 -26.73 -0.14 -1.05 16 3 C -0.10 -0.89 2.28 -90.62 -0.21 -1.09 16 4 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 5 C -0.15 -1.51 8.45 37.16 0.31 -1.19 16 6 C 0.08 0.85 2.06 -26.73 -0.06 0.80 16 7 H 0.07 0.59 7.60 -51.93 -0.39 0.19 16 8 C 0.11 1.51 5.01 -4.04 -0.02 1.49 16 9 N -0.74 -11.30 5.44 -60.29 -0.33 -11.63 16 10 C 0.51 10.35 7.44 -10.99 -0.08 10.26 16 11 O -0.52 -12.86 16.03 5.55 0.09 -12.77 16 12 C -0.07 -1.42 5.18 -29.04 -0.15 -1.57 16 13 C -0.18 -4.47 4.43 -103.92 -0.46 -4.93 16 14 C -0.08 -1.91 9.66 -39.67 -0.38 -2.29 16 15 C -0.24 -5.76 10.05 -39.29 -0.39 -6.16 16 16 C -0.11 -2.66 10.02 -39.66 -0.40 -3.06 16 17 C -0.16 -4.41 8.69 -38.87 -0.34 -4.74 16 18 C 0.13 3.57 5.56 -106.82 -0.59 2.97 16 19 C -0.46 -12.34 8.14 -37.74 -0.31 -12.65 16 20 H 0.07 1.98 6.67 -52.49 -0.35 1.63 16 21 C 0.08 2.03 5.12 -17.34 -0.09 1.94 16 22 N -0.79 -20.88 11.07 55.55 0.61 -20.26 16 23 Si 0.90 19.43 29.60 -169.99 -5.03 14.40 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 26 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 27 O -0.37 -4.20 8.87 -35.23 -0.31 -4.52 16 28 C 0.03 0.24 10.64 101.05 1.08 1.31 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.59 7.84 -51.93 -0.41 0.18 16 34 H 0.06 0.69 6.43 -51.93 -0.33 0.35 16 35 H 0.05 0.48 6.56 -51.93 -0.34 0.14 16 36 H 0.06 0.72 7.68 -51.93 -0.40 0.32 16 37 H 0.08 1.23 6.44 -51.93 -0.33 0.89 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.39 4.86 7.56 -40.82 -0.31 4.55 16 40 H 0.10 1.91 7.07 -51.93 -0.37 1.54 16 41 H 0.07 1.24 8.05 -51.93 -0.42 0.82 16 42 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 43 H 0.08 1.79 8.06 -52.49 -0.42 1.36 16 44 H 0.09 1.91 8.06 -52.48 -0.42 1.49 16 45 H 0.11 3.20 6.26 -52.49 -0.33 2.87 16 46 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 47 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 49 H 0.04 0.31 7.38 -51.93 -0.38 -0.07 16 LS Contribution 391.48 15.07 5.90 5.90 Total: -1.00 -31.78 391.48 -9.00 -40.78 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -8.07 Total: 8.77 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: -1.87 Total: -20.68 kcal Atomic # 7 Polarization: -32.18 SS G_CDS: 0.29 Total: -31.89 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.22 Total: -17.28 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.40 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.78 -9.00 -40.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649826081.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.097 kcal (2) G-P(sol) polarization free energy of solvation -31.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds