Wall clock time and date at job start Tue Mar 31 2020 14:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46865 * 2 1 4 4 H 1.08993 * 109.47242 * 304.99619 * 3 2 1 5 5 C 1.52998 * 109.47136 * 65.00583 * 3 2 1 6 6 C 1.53004 * 109.46689 * 185.00053 * 3 2 1 7 7 H 1.08999 * 109.46970 * 60.00591 * 6 3 2 8 8 C 1.53003 * 109.47107 * 180.02562 * 6 3 2 9 9 N 1.46493 * 109.47496 * 180.16324 * 8 6 3 10 10 C 1.34772 * 120.00497 * 182.39190 * 9 8 6 11 11 O 1.21288 * 119.99869 * 0.02562 * 10 9 8 12 12 C 1.50702 * 120.00422 * 179.72351 * 10 9 8 13 13 C 1.50695 * 109.47018 * 180.27547 * 12 10 9 14 14 C 1.37636 * 120.12958 * 264.99515 * 13 12 10 15 15 C 1.38607 * 120.25088 * 179.97438 * 14 13 12 16 16 C 1.38657 * 120.50406 * 0.02823 * 15 14 13 17 17 C 1.37604 * 120.24656 * 0.02562 * 16 15 14 18 18 C 1.40697 * 120.12603 * 84.73073 * 13 12 10 19 19 C 1.41392 * 120.24634 * 359.97438 * 18 13 12 20 20 H 1.08001 * 120.00091 * 334.24371 * 19 18 13 21 21 C 1.39954 * 119.99892 * 154.24139 * 19 18 13 22 22 N 1.30817 * 120.00204 * 341.50546 * 21 19 18 23 23 Si 1.86799 * 119.99875 * 161.50908 * 21 19 18 24 24 H 1.48503 * 109.47128 * 59.99695 * 23 21 19 25 25 H 1.48492 * 109.47308 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47270 * 300.00002 * 23 21 19 27 27 O 1.42898 * 109.47202 * 300.00055 * 6 3 2 28 28 C 1.42903 * 113.99688 * 119.11798 * 27 6 3 29 29 H 1.08998 * 109.46850 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46598 * 299.99422 * 1 2 3 31 31 H 1.08997 * 109.46758 * 59.99743 * 1 2 3 32 32 H 1.09004 * 109.46967 * 240.00045 * 2 1 3 33 33 H 1.08998 * 109.47254 * 120.00432 * 2 1 3 34 34 H 1.08998 * 109.47214 * 179.97438 * 5 3 2 35 35 H 1.09004 * 109.46642 * 299.99687 * 5 3 2 36 36 H 1.09003 * 109.47290 * 59.99474 * 5 3 2 37 37 H 1.09001 * 109.47050 * 60.15701 * 8 6 3 38 38 H 1.09002 * 109.46747 * 300.16350 * 8 6 3 39 39 H 0.97006 * 119.99652 * 2.38751 * 9 8 6 40 40 H 1.08997 * 109.47079 * 300.27736 * 12 10 9 41 41 H 1.08997 * 109.46690 * 60.27330 * 12 10 9 42 42 H 1.07997 * 119.87388 * 0.02562 * 14 13 12 43 43 H 1.08000 * 119.75301 * 180.02562 * 15 14 13 44 44 H 1.08003 * 119.88219 * 179.97438 * 16 15 14 45 45 H 1.08000 * 120.12863 * 179.97438 * 17 16 15 46 46 H 0.96999 * 120.00388 * 180.02562 * 22 21 19 47 47 H 1.09003 * 109.46600 * 179.39561 * 28 27 6 48 48 H 1.09002 * 109.47051 * 299.38522 * 28 27 6 49 49 H 1.08995 * 109.47516 * 59.39556 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5649 1.4443 -0.1257 7 1 3.8532 0.9570 -1.0572 8 6 4.0750 2.8868 -0.1251 9 7 5.5346 2.8887 -0.2494 10 6 6.2117 4.0536 -0.2226 11 8 5.6127 5.1005 -0.0951 12 6 7.7139 4.0552 -0.3442 13 6 8.2216 5.4725 -0.2791 14 6 8.4563 6.1762 -1.4384 15 6 8.9229 7.4802 -1.3814 16 6 9.1590 8.0904 -0.1590 17 6 8.9325 7.4056 1.0128 18 6 8.4524 6.0834 0.9672 19 6 8.2090 5.3723 2.1648 20 1 7.4890 4.5674 2.1782 21 6 8.9012 5.7116 3.3329 22 7 10.0044 6.4109 3.2599 23 14 8.2499 5.1657 4.9964 24 1 8.1802 3.6829 5.0384 25 1 9.1589 5.6485 6.0667 26 1 6.8929 5.7311 5.2065 27 8 4.1346 0.7376 0.9778 28 6 4.9003 -0.4087 0.6010 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.9990 3.1540 1.3076 35 1 0.5490 2.1251 1.3970 36 1 2.0700 1.5874 2.1492 37 1 3.7890 3.3728 0.8077 38 1 3.6381 3.4270 -0.9650 39 1 6.0138 2.0514 -0.3510 40 1 8.1451 3.4768 0.4728 41 1 8.0017 3.6094 -1.2963 42 1 8.2755 5.7109 -2.3961 43 1 9.1039 8.0251 -2.2962 44 1 9.5229 9.1068 -0.1263 45 1 9.1174 7.8826 1.9640 46 1 10.4843 6.6457 4.0694 47 1 5.3072 -0.8833 1.4940 48 1 4.2601 -1.1159 0.0736 49 1 5.7174 -0.1014 -0.0516 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649826081.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:06 Heat of formation + Delta-G solvation = -106.464597 kcal Electronic energy + Delta-G solvation = -27271.632648 eV Core-core repulsion = 23582.784798 eV Total energy + Delta-G solvation = -3688.847850 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.94323 -39.89701 -38.96686 -36.40397 -35.51223 -35.43534 -33.46750 -31.73848 -31.33817 -29.30374 -28.18941 -27.22156 -26.81967 -25.92619 -22.93009 -22.80095 -22.10443 -21.15376 -20.58118 -19.07430 -17.99365 -17.61019 -17.40795 -17.12642 -16.40579 -16.32089 -16.11970 -15.65243 -15.47799 -15.26045 -15.18996 -14.69604 -14.40465 -14.34030 -14.23334 -13.85778 -13.57386 -13.44177 -13.37510 -12.94075 -12.86124 -12.76015 -12.66175 -12.55938 -12.53921 -12.47892 -12.12777 -11.94246 -11.85746 -11.45527 -11.34078 -11.31231 -11.21855 -11.01749 -10.84436 -10.37418 -9.99099 -9.23315 -9.15693 -8.61751 -6.28670 1.00079 1.13648 1.33996 1.43914 1.53503 1.84852 2.18898 2.36449 2.77579 2.83693 3.67689 3.74607 3.89496 3.95123 4.14170 4.17990 4.29972 4.40323 4.45512 4.51764 4.55845 4.60944 4.62018 4.65449 4.69019 4.71843 4.75614 4.79741 4.81095 4.91260 4.95488 5.08040 5.08547 5.19917 5.20417 5.23267 5.25698 5.36133 5.50196 5.52244 5.55024 5.58537 5.77819 6.04079 6.16997 6.21721 6.30510 6.42531 6.65251 6.75091 6.99224 7.11620 7.45462 8.35291 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013442 B = 0.003467 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.574883 B = 8073.920903 C = 9271.229285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.095 4.095 4 H 0.090 0.910 5 C -0.146 4.146 6 C 0.092 3.908 7 H 0.092 0.908 8 C 0.108 3.892 9 N -0.720 5.720 10 C 0.515 3.485 11 O -0.575 6.575 12 C -0.069 4.069 13 C -0.188 4.188 14 C -0.090 4.090 15 C -0.244 4.244 16 C -0.116 4.116 17 C -0.196 4.196 18 C 0.096 3.904 19 C -0.484 4.484 20 H 0.068 0.932 21 C 0.040 3.960 22 N -0.823 5.823 23 Si 0.966 3.034 24 H -0.255 1.255 25 H -0.264 1.264 26 H -0.273 1.273 27 O -0.395 6.395 28 C 0.021 3.979 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.040 0.960 35 H 0.066 0.934 36 H 0.050 0.950 37 H 0.049 0.951 38 H 0.072 0.928 39 H 0.409 0.591 40 H 0.094 0.906 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.106 0.894 45 H 0.094 0.906 46 H 0.287 0.713 47 H 0.088 0.912 48 H 0.058 0.942 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.701 -16.942 -6.432 22.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.114 4.114 4 H 0.108 0.892 5 C -0.204 4.204 6 C 0.033 3.967 7 H 0.109 0.891 8 C -0.016 4.016 9 N -0.374 5.374 10 C 0.303 3.697 11 O -0.454 6.454 12 C -0.108 4.108 13 C -0.190 4.190 14 C -0.108 4.108 15 C -0.263 4.263 16 C -0.135 4.135 17 C -0.216 4.216 18 C 0.094 3.906 19 C -0.514 4.514 20 H 0.087 0.913 21 C -0.175 4.175 22 N -0.449 5.449 23 Si 0.788 3.212 24 H -0.179 1.179 25 H -0.188 1.188 26 H -0.198 1.198 27 O -0.314 6.314 28 C -0.075 4.075 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.245 0.755 40 H 0.112 0.888 41 H 0.132 0.868 42 H 0.136 0.864 43 H 0.134 0.866 44 H 0.124 0.876 45 H 0.112 0.888 46 H 0.097 0.903 47 H 0.107 0.893 48 H 0.077 0.923 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.957 -16.055 -6.003 21.487 hybrid contribution 0.287 -0.040 0.794 0.845 sum -12.670 -16.095 -5.209 21.136 Atomic orbital electron populations 1.21813 0.95200 1.01984 1.02006 1.21464 0.96368 0.94770 1.02222 1.21448 0.92717 0.98072 0.99200 0.89211 1.21829 1.01441 0.99606 0.97489 1.22411 0.93757 0.89899 0.90587 0.89054 1.21776 0.80314 0.97988 1.01513 1.45796 1.07581 1.08663 1.75339 1.21157 0.90759 0.83185 0.74578 1.90660 1.71344 1.33562 1.49824 1.20272 0.90109 0.96056 1.04403 1.19541 1.10563 0.95918 0.93002 1.20742 0.98665 0.94659 0.96777 1.20721 1.12049 0.96903 0.96585 1.20946 1.00454 0.98717 0.93351 1.21264 1.07854 0.95618 0.96820 1.17727 0.88730 0.91373 0.92763 1.19567 1.20907 1.16755 0.94157 0.91347 1.26614 0.93237 0.93478 1.04202 1.69871 1.12370 1.30529 1.32125 0.85492 0.78881 0.79991 0.76840 1.17866 1.18768 1.19813 1.87980 1.68980 1.42207 1.32203 1.23071 0.94904 0.87549 1.02026 0.92152 0.92825 0.92350 0.91212 0.92137 0.94080 0.91473 0.93084 0.93238 0.90984 0.75523 0.88765 0.86799 0.86399 0.86576 0.87629 0.88773 0.90277 0.89328 0.92310 0.93188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.67 71.98 0.70 -1.11 16 2 C -0.11 -1.47 5.19 30.60 0.16 -1.31 16 3 C -0.10 -1.57 2.28 -10.79 -0.02 -1.60 16 4 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 5 C -0.15 -2.94 8.45 71.98 0.61 -2.33 16 6 C 0.09 1.71 2.06 30.60 0.06 1.78 16 7 H 0.09 1.28 7.60 -2.39 -0.02 1.26 16 8 C 0.11 2.89 5.01 86.38 0.43 3.32 16 9 N -0.72 -21.04 5.44 -463.06 -2.52 -23.56 16 10 C 0.52 20.51 7.44 87.66 0.65 21.16 16 11 O -0.58 -28.92 16.03 -3.06 -0.05 -28.97 16 12 C -0.07 -2.70 5.18 29.10 0.15 -2.55 16 13 C -0.19 -9.28 4.43 -19.41 -0.09 -9.37 16 14 C -0.09 -4.14 9.66 22.22 0.21 -3.92 16 15 C -0.24 -11.28 10.05 22.46 0.23 -11.05 16 16 C -0.12 -5.86 10.02 22.22 0.22 -5.63 16 17 C -0.20 -11.12 8.69 22.73 0.20 -10.92 16 18 C 0.10 5.43 5.56 -21.29 -0.12 5.31 16 19 C -0.48 -27.04 8.14 23.46 0.19 -26.85 16 20 H 0.07 3.76 6.67 -2.91 -0.02 3.74 16 21 C 0.04 2.09 5.12 85.26 0.44 2.53 16 22 N -0.82 -44.60 11.07 21.83 0.24 -44.36 16 23 Si 0.97 40.62 29.60 68.60 2.03 42.65 16 24 H -0.25 -10.15 7.11 99.48 0.71 -9.44 16 25 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 27 O -0.39 -8.29 8.87 -148.98 -1.32 -9.61 16 28 C 0.02 0.29 10.64 113.37 1.21 1.50 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.05 0.68 6.56 -2.39 -0.02 0.67 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.92 7.84 -2.39 -0.02 0.90 16 34 H 0.04 0.97 6.43 -2.39 -0.02 0.95 16 35 H 0.07 1.14 6.56 -2.38 -0.02 1.12 16 36 H 0.05 1.15 7.68 -2.39 -0.02 1.13 16 37 H 0.05 1.63 6.44 -2.39 -0.02 1.61 16 38 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.41 9.17 7.56 -92.70 -0.70 8.47 16 40 H 0.09 3.71 7.07 -2.39 -0.02 3.70 16 41 H 0.11 3.47 8.05 -2.39 -0.02 3.45 16 42 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 43 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 44 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 45 H 0.09 5.57 6.26 -2.91 -0.02 5.55 16 46 H 0.29 14.11 8.30 -92.71 -0.77 13.35 16 47 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.05 0.61 7.38 -2.39 -0.02 0.59 16 Total: -1.00 -71.74 391.48 3.85 -67.89 By element: Atomic # 1 Polarization: 36.76 SS G_CDS: 0.24 Total: 37.00 kcal Atomic # 6 Polarization: -46.27 SS G_CDS: 5.23 Total: -41.04 kcal Atomic # 7 Polarization: -65.64 SS G_CDS: -2.28 Total: -67.92 kcal Atomic # 8 Polarization: -37.21 SS G_CDS: -1.37 Total: -38.58 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Total: -71.74 3.85 -67.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649826081.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.572 kcal (2) G-P(sol) polarization free energy of solvation -71.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds