Wall clock time and date at job start Tue Mar 31 2020 12:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47483 * 2 1 4 4 N 1.46502 * 109.47246 * 179.97438 * 3 2 1 5 5 C 1.37093 * 119.99741 * 264.74938 * 4 3 2 6 6 H 1.08002 * 119.99852 * 146.17564 * 5 4 3 7 7 C 1.38948 * 119.99975 * 326.16560 * 5 4 3 8 8 N 1.31406 * 120.00358 * 337.67885 * 7 5 4 9 9 Si 1.86801 * 119.99885 * 157.67755 * 7 5 4 10 10 H 1.48503 * 109.47240 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47287 * 120.00263 * 9 7 5 12 12 H 1.48502 * 109.47271 * 240.00261 * 9 7 5 13 13 C 1.34779 * 120.00148 * 84.74794 * 4 3 2 14 14 O 1.21285 * 120.00233 * 179.97438 * 13 4 3 15 15 C 1.50707 * 119.99747 * 0.02562 * 13 4 3 16 16 O 1.42895 * 109.46945 * 179.97438 * 15 13 4 17 17 C 1.35895 * 117.00120 * 179.97438 * 16 15 13 18 18 C 1.38751 * 120.05757 * 0.04607 * 17 16 15 19 19 C 1.38117 * 119.94789 * 179.97438 * 18 17 16 20 20 C 1.38285 * 120.05675 * 359.97438 * 19 18 17 21 21 C 1.38244 * 120.10883 * 359.97325 * 20 19 18 22 22 C 1.38163 * 120.05847 * 0.04903 * 21 20 19 23 23 C 1.50700 * 120.02897 * 179.97438 * 22 21 20 24 24 H 1.08995 * 109.47067 * 179.97438 * 23 22 21 25 25 C 1.53000 * 109.47366 * 299.99966 * 23 22 21 26 26 C 1.53007 * 109.46844 * 60.00162 * 23 22 21 27 27 C 1.53000 * 109.46779 * 174.99593 * 26 23 22 28 28 H 1.09007 * 109.46778 * 60.00198 * 1 2 3 29 29 H 1.09002 * 109.47352 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47026 * 300.00656 * 1 2 3 31 31 H 1.09007 * 109.47352 * 239.99571 * 2 1 3 32 32 H 1.09004 * 109.47278 * 119.99894 * 2 1 3 33 33 H 1.08994 * 109.47135 * 59.99745 * 3 2 1 34 34 H 1.09004 * 109.46493 * 299.99472 * 3 2 1 35 35 H 0.96994 * 120.00622 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.47335 * 59.99766 * 15 13 4 37 37 H 1.09006 * 109.46538 * 299.99743 * 15 13 4 38 38 H 1.08003 * 120.02271 * 359.97438 * 18 17 16 39 39 H 1.08007 * 119.97311 * 180.25078 * 19 18 17 40 40 H 1.08004 * 119.94490 * 179.97438 * 20 19 18 41 41 H 1.08003 * 119.97067 * 180.02562 * 21 20 19 42 42 H 1.09007 * 109.46965 * 60.00330 * 25 23 22 43 43 H 1.09000 * 109.46966 * 179.97438 * 25 23 22 44 44 H 1.08993 * 109.46909 * 300.00435 * 25 23 22 45 45 H 1.08995 * 109.47228 * 294.99672 * 26 23 22 46 46 H 1.08995 * 109.47116 * 55.00286 * 26 23 22 47 47 H 1.09010 * 109.47185 * 60.00363 * 27 26 23 48 48 H 1.08996 * 109.46929 * 179.97438 * 27 26 23 49 49 H 1.08995 * 109.47305 * 300.00032 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1900 1.5512 1.1832 6 1 5.1328 1.0400 1.3102 7 6 3.6713 2.3194 2.2183 8 7 2.8003 3.2687 1.9595 9 14 4.2121 2.0027 3.9781 10 1 5.1934 0.8883 4.0014 11 1 4.8426 3.2285 4.5304 12 1 3.0306 1.6397 4.8013 13 6 4.1795 1.3354 -1.1614 14 8 5.3923 1.3358 -1.1609 15 6 3.4265 1.2163 -2.4614 16 8 4.3555 1.1172 -3.5426 17 6 3.8366 1.0021 -4.7933 18 6 2.4614 0.9859 -4.9764 19 6 1.9365 0.8694 -6.2486 20 6 2.7804 0.7694 -7.3395 21 6 4.1510 0.7864 -7.1599 22 6 4.6810 0.9023 -5.8893 23 6 6.1752 0.9202 -5.6942 24 1 6.4019 1.0175 -4.6325 25 6 6.7748 -0.3827 -6.2269 26 6 6.7746 2.1055 -6.4539 27 6 8.2724 2.1975 -6.1556 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6768 1.9562 -0.8901 35 1 2.4384 3.8052 2.6820 36 1 2.8002 2.0975 -2.6006 37 1 2.7995 0.3250 -2.4377 38 1 1.8019 1.0643 -4.1247 39 1 0.8660 0.8608 -6.3920 40 1 2.3680 0.6779 -8.3335 41 1 4.8080 0.7086 -8.0136 42 1 6.5482 -0.4796 -7.2887 43 1 7.8556 -0.3695 -6.0862 44 1 6.3478 -1.2270 -5.6858 45 1 6.6252 1.9640 -7.5242 46 1 6.2839 3.0257 -6.1370 47 1 8.7632 1.2772 -6.4725 48 1 8.6994 3.0416 -6.6971 49 1 8.4217 2.3390 -5.0853 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060541816.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:03 Heat of formation + Delta-G solvation = -64.640139 kcal Electronic energy + Delta-G solvation = -27552.290804 eV Core-core repulsion = 23865.256599 eV Total energy + Delta-G solvation = -3687.034205 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.26618 -38.70491 -37.17337 -35.91871 -35.25334 -32.87297 -31.32882 -31.09405 -29.99915 -28.79200 -27.80706 -25.81289 -24.72705 -24.36343 -22.59264 -21.76125 -21.06975 -19.76953 -19.07823 -17.95016 -16.90240 -16.11047 -15.88035 -15.79478 -15.44754 -14.85161 -14.60412 -14.37723 -14.27134 -13.99423 -13.82295 -13.68775 -13.39288 -13.09650 -12.81189 -12.58042 -12.32017 -12.04862 -11.95848 -11.76685 -11.72383 -11.62028 -11.50097 -11.37012 -11.23639 -11.03726 -10.85749 -10.65795 -10.63559 -10.40536 -10.34645 -10.30643 -10.24787 -10.00444 -9.02447 -8.74909 -8.45904 -7.93662 -7.57478 -6.40126 -4.01364 1.40467 1.56951 3.11673 3.21588 3.26585 3.38220 3.76316 3.85489 4.15167 4.71087 4.77110 4.88539 4.96252 5.06477 5.13099 5.16428 5.20875 5.36995 5.41710 5.44276 5.54335 5.56509 5.59026 5.65599 5.66909 5.70499 5.71216 5.74818 5.95438 5.97204 6.04500 6.09759 6.11029 6.12372 6.24849 6.28603 6.36391 6.38382 6.42798 6.51387 6.51907 6.58625 6.74550 6.82483 6.90608 7.19041 7.54157 7.64801 8.16523 8.43664 9.10561 9.30772 9.89875 10.63696 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014319 B = 0.003592 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.042735 B = 7792.325482 C = 9231.993065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.142 4.142 3 C 0.097 3.903 4 N -0.436 5.436 5 C -0.306 4.306 6 H 0.095 0.905 7 C 0.037 3.963 8 N -0.868 5.868 9 Si 0.919 3.081 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.279 1.279 13 C 0.458 3.542 14 O -0.560 6.560 15 C 0.047 3.953 16 O -0.283 6.283 17 C 0.139 3.861 18 C -0.211 4.211 19 C -0.085 4.085 20 C -0.166 4.166 21 C -0.080 4.080 22 C -0.108 4.108 23 C -0.052 4.052 24 H 0.094 0.906 25 C -0.140 4.140 26 C -0.111 4.111 27 C -0.154 4.154 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.119 0.881 34 H 0.045 0.955 35 H 0.268 0.732 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.128 0.872 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.051 0.949 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.055 0.945 48 H 0.050 0.950 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.149 -4.656 -15.080 16.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C -0.027 4.027 4 N -0.156 5.156 5 C -0.433 4.433 6 H 0.113 0.887 7 C -0.168 4.168 8 N -0.506 5.506 9 Si 0.745 3.255 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.205 1.205 13 C 0.245 3.755 14 O -0.442 6.442 15 C -0.031 4.031 16 O -0.195 6.195 17 C 0.093 3.907 18 C -0.230 4.230 19 C -0.103 4.103 20 C -0.184 4.184 21 C -0.098 4.098 22 C -0.109 4.109 23 C -0.071 4.071 24 H 0.112 0.888 25 C -0.197 4.197 26 C -0.149 4.149 27 C -0.211 4.211 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.136 0.864 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.145 0.855 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.142 0.858 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.080 0.920 47 H 0.074 0.926 48 H 0.069 0.931 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.420 -4.499 -14.880 15.733 hybrid contribution -0.462 0.007 0.872 0.987 sum -2.882 -4.493 -14.008 14.991 Atomic orbital electron populations 1.21678 0.96142 1.00817 1.01642 1.22000 0.95073 0.99151 1.01821 1.21754 0.81877 0.94659 1.04400 1.43429 1.04638 1.63212 1.04311 1.19522 1.07079 1.28583 0.88136 0.88746 1.25341 0.97242 0.93550 1.00623 1.69917 1.30875 1.16818 1.32966 0.85994 0.78675 0.78734 0.82111 1.19078 1.20696 1.20516 1.19792 0.88187 0.83653 0.83886 1.90559 1.13615 1.53750 1.86243 1.22740 0.92056 1.01850 0.86475 1.86183 1.34712 1.86825 1.11755 1.19024 0.91603 0.94902 0.85212 1.21304 0.93981 1.08930 0.98801 1.20874 0.99506 0.97961 0.91953 1.20945 0.93454 1.05437 0.98584 1.20767 0.94965 0.98369 0.95675 1.19223 0.95299 1.05473 0.90870 1.20066 0.89598 0.95136 1.02264 0.88775 1.21857 1.00604 0.96897 1.00388 1.21543 0.95777 0.98121 0.99438 1.21832 0.95931 1.01227 1.02144 0.93196 0.93322 0.92575 0.93361 0.91399 0.86387 0.93632 0.92153 0.90395 0.90648 0.85454 0.86158 0.86368 0.85844 0.93018 0.92264 0.92717 0.92357 0.91991 0.92629 0.93077 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.91 37.15 0.37 -1.65 16 2 C -0.14 -2.46 6.17 -26.73 -0.16 -2.63 16 3 C 0.10 2.03 4.72 -4.04 -0.02 2.01 16 4 N -0.44 -10.87 2.56 -114.81 -0.29 -11.16 16 5 C -0.31 -8.35 8.98 -14.94 -0.13 -8.49 16 6 H 0.09 2.72 7.70 -52.49 -0.40 2.32 16 7 C 0.04 0.95 4.92 -17.47 -0.09 0.86 16 8 N -0.87 -22.76 11.33 55.50 0.63 -22.13 16 9 Si 0.92 20.20 29.61 -169.99 -5.03 15.16 16 10 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 13 C 0.46 11.41 7.67 -10.98 -0.08 11.33 16 14 O -0.56 -16.18 16.32 -14.36 -0.23 -16.41 16 15 C 0.05 0.92 3.83 36.01 0.14 1.06 16 16 O -0.28 -5.64 8.44 -39.32 -0.33 -5.97 16 17 C 0.14 2.31 6.66 -39.22 -0.26 2.05 16 18 C -0.21 -3.02 9.04 -39.44 -0.36 -3.38 16 19 C -0.08 -1.02 10.04 -39.61 -0.40 -1.42 16 20 C -0.17 -1.88 10.04 -39.56 -0.40 -2.28 16 21 C -0.08 -0.97 8.76 -39.61 -0.35 -1.31 16 22 C -0.11 -1.58 4.79 -104.47 -0.50 -2.08 16 23 C -0.05 -0.73 2.53 -91.77 -0.23 -0.97 16 24 H 0.09 1.64 6.99 -51.93 -0.36 1.27 16 25 C -0.14 -1.67 8.76 37.16 0.33 -1.34 16 26 C -0.11 -1.36 5.14 -26.73 -0.14 -1.49 16 27 C -0.15 -1.74 9.67 37.16 0.36 -1.38 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.80 6.60 -51.93 -0.34 0.46 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.12 2.73 5.34 -51.93 -0.28 2.45 16 34 H 0.05 0.86 6.66 -51.93 -0.35 0.52 16 35 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 36 H 0.08 1.40 6.93 -51.93 -0.36 1.04 16 37 H 0.08 1.29 6.06 -51.93 -0.31 0.98 16 38 H 0.13 1.69 6.30 -52.48 -0.33 1.36 16 39 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 40 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 41 H 0.12 1.22 7.16 -52.48 -0.38 0.84 16 42 H 0.05 0.52 7.39 -51.92 -0.38 0.14 16 43 H 0.06 0.65 6.56 -51.93 -0.34 0.31 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.61 7.57 -51.93 -0.39 0.22 16 46 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.05 0.56 6.57 -51.92 -0.34 0.22 16 48 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 388.59 15.07 5.86 5.86 Total: -1.00 -30.95 388.59 -9.27 -40.22 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -7.94 Total: 5.54 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -1.93 Total: -11.11 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: 0.34 Total: -33.29 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.57 Total: -22.38 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.16 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.95 -9.27 -40.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060541816.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.424 kcal (2) G-P(sol) polarization free energy of solvation -30.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds