Wall clock time and date at job start Tue Mar 31 2020 12:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53008 * 109.46828 * 2 1 4 4 N 1.46500 * 109.46912 * 180.02562 * 3 2 1 5 5 C 1.37101 * 119.99753 * 264.75144 * 4 3 2 6 6 H 1.08003 * 119.99827 * 146.17163 * 5 4 3 7 7 C 1.38954 * 120.00380 * 326.16960 * 5 4 3 8 8 N 1.31410 * 119.99673 * 337.67522 * 7 5 4 9 9 Si 1.86795 * 120.00058 * 157.67397 * 7 5 4 10 10 H 1.48498 * 109.47280 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46883 * 120.00150 * 9 7 5 12 12 H 1.48502 * 109.47089 * 240.00083 * 9 7 5 13 13 C 1.34776 * 120.00022 * 84.75672 * 4 3 2 14 14 O 1.21289 * 119.99987 * 179.97438 * 13 4 3 15 15 C 1.50699 * 120.00004 * 359.97438 * 13 4 3 16 16 O 1.42896 * 109.46800 * 180.02562 * 15 13 4 17 17 C 1.35902 * 116.99696 * 180.02562 * 16 15 13 18 18 C 1.38760 * 120.05712 * 359.72851 * 17 16 15 19 19 C 1.38123 * 119.94408 * 179.70259 * 18 17 16 20 20 C 1.38287 * 120.05502 * 0.59042 * 19 18 17 21 21 C 1.38240 * 120.11446 * 359.68767 * 20 19 18 22 22 C 1.38167 * 120.05536 * 0.02562 * 21 20 19 23 23 C 1.50703 * 120.03154 * 179.97438 * 22 21 20 24 24 C 1.53002 * 109.46900 * 0.02562 * 23 22 21 25 25 C 1.52996 * 109.47140 * 120.02143 * 23 22 21 26 26 C 1.52997 * 109.46620 * 240.02136 * 23 22 21 27 27 H 1.08998 * 109.47239 * 299.99237 * 1 2 3 28 28 H 1.08998 * 109.47802 * 59.99840 * 1 2 3 29 29 H 1.09009 * 109.46726 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47239 * 240.00763 * 2 1 3 31 31 H 1.08998 * 109.47802 * 120.00160 * 2 1 3 32 32 H 1.08998 * 109.46588 * 60.00364 * 3 2 1 33 33 H 1.08996 * 109.47307 * 300.00143 * 3 2 1 34 34 H 0.97003 * 119.99976 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.46447 * 60.00546 * 15 13 4 36 36 H 1.08994 * 109.47244 * 300.00732 * 15 13 4 37 37 H 1.07998 * 120.02502 * 359.97421 * 18 17 16 38 38 H 1.08004 * 119.97133 * 180.29657 * 19 18 17 39 39 H 1.08003 * 119.94327 * 179.70200 * 20 19 18 40 40 H 1.07993 * 119.97633 * 179.97438 * 21 20 19 41 41 H 1.08999 * 109.46275 * 60.00367 * 24 23 22 42 42 H 1.08992 * 109.46833 * 179.97438 * 24 23 22 43 43 H 1.08999 * 109.47069 * 300.00582 * 24 23 22 44 44 H 1.08997 * 109.47266 * 60.00205 * 25 23 22 45 45 H 1.09001 * 109.46624 * 179.97438 * 25 23 22 46 46 H 1.08999 * 109.46973 * 299.99713 * 25 23 22 47 47 H 1.08997 * 109.47440 * 59.99972 * 26 23 22 48 48 H 1.09001 * 109.46931 * 179.97438 * 26 23 22 49 49 H 1.09005 * 109.47749 * 299.99451 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1908 1.5511 1.1815 6 1 5.1338 1.0398 1.3075 7 6 3.6730 2.3188 2.2174 8 7 2.8017 3.2681 1.9596 9 14 4.2153 2.0014 3.9765 10 1 5.1966 0.8871 3.9986 11 1 4.8462 3.2271 4.5288 12 1 3.0345 1.6381 4.8006 13 6 4.1783 1.3361 -1.1632 14 8 5.3912 1.3366 -1.1638 15 6 3.4242 1.2165 -2.4625 16 8 4.3524 1.1169 -3.5444 17 6 3.8325 1.0023 -4.7948 18 6 2.4569 0.9804 -4.9761 19 6 1.9310 0.8700 -6.2485 20 6 2.7740 0.7691 -7.3401 21 6 4.1447 0.7850 -7.1616 22 6 4.6759 0.9011 -5.8914 23 6 6.1703 0.9178 -5.6974 24 6 6.8623 0.7931 -7.0563 25 6 6.5837 2.2326 -5.0333 26 6 6.5818 -0.2555 -4.8058 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6765 1.9563 0.8900 33 1 1.6765 1.9564 -0.8899 34 1 2.4398 3.8039 2.6828 35 1 2.7973 2.0973 -2.6011 36 1 2.7979 0.3248 -2.4383 37 1 1.7982 1.0539 -4.1235 38 1 0.8604 0.8577 -6.3906 39 1 2.3608 0.6780 -8.3338 40 1 4.8010 0.7056 -8.0156 41 1 6.5690 1.6291 -7.6913 42 1 7.9431 0.8056 -6.9160 43 1 6.5677 -0.1435 -7.5295 44 1 6.0907 2.3214 -4.0653 45 1 7.6646 2.2443 -4.8926 46 1 6.2905 3.0684 -5.6685 47 1 6.2872 -1.1922 -5.2789 48 1 7.6627 -0.2438 -4.6659 49 1 6.0888 -0.1667 -3.8377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060541886.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:42 Heat of formation + Delta-G solvation = -57.741204 kcal Electronic energy + Delta-G solvation = -28114.361572 eV Core-core repulsion = 24427.626527 eV Total energy + Delta-G solvation = -3686.735045 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.42787 -38.72746 -37.16296 -36.09937 -35.24981 -32.87109 -31.30952 -30.25370 -29.83957 -27.96544 -27.14168 -26.87149 -25.79282 -24.31125 -22.84930 -21.83295 -21.05909 -19.50989 -18.95257 -17.76303 -16.90635 -16.11663 -15.81161 -15.67432 -15.41524 -14.78186 -14.41264 -14.25231 -14.07440 -14.05028 -13.82236 -13.60010 -13.32121 -13.13873 -12.75725 -12.36159 -12.14853 -11.84452 -11.81203 -11.80050 -11.70617 -11.50198 -11.41730 -11.30952 -11.27417 -11.04460 -10.80858 -10.70822 -10.60121 -10.47685 -10.34697 -10.29013 -10.16067 -10.00200 -9.02215 -8.74993 -8.45113 -7.91241 -7.57247 -6.40136 -4.01288 1.42797 1.58311 3.11588 3.21628 3.26541 3.38239 3.76835 3.87497 4.15131 4.71022 4.78839 4.89422 4.96301 5.07167 5.18581 5.20486 5.23988 5.39632 5.42356 5.52337 5.54938 5.60023 5.66545 5.71096 5.72630 5.77879 5.86887 5.95544 6.03673 6.05985 6.07622 6.12381 6.18761 6.28476 6.30331 6.30698 6.38319 6.51823 6.52592 6.53862 6.64370 6.72420 6.81665 6.83347 6.98485 7.19067 7.54097 7.66159 8.16664 8.43606 9.10744 9.31053 9.90085 10.63637 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016250 B = 0.003769 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.616648 B = 7426.883860 C = 8643.572314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.142 4.142 3 C 0.098 3.902 4 N -0.436 5.436 5 C -0.305 4.305 6 H 0.095 0.905 7 C 0.036 3.964 8 N -0.868 5.868 9 Si 0.918 3.082 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.280 1.280 13 C 0.459 3.541 14 O -0.559 6.559 15 C 0.043 3.957 16 O -0.276 6.276 17 C 0.141 3.859 18 C -0.212 4.212 19 C -0.086 4.086 20 C -0.166 4.166 21 C -0.087 4.087 22 C -0.103 4.103 23 C -0.016 4.016 24 C -0.142 4.142 25 C -0.142 4.142 26 C -0.142 4.142 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.118 0.882 33 H 0.045 0.955 34 H 0.268 0.732 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.127 0.873 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.129 0.871 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.080 0.920 45 H 0.053 0.947 46 H 0.046 0.954 47 H 0.045 0.955 48 H 0.053 0.947 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.580 -4.860 -14.423 15.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C -0.027 4.027 4 N -0.156 5.156 5 C -0.433 4.433 6 H 0.112 0.888 7 C -0.168 4.168 8 N -0.506 5.506 9 Si 0.744 3.256 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.205 1.205 13 C 0.245 3.755 14 O -0.440 6.440 15 C -0.035 4.035 16 O -0.188 6.188 17 C 0.095 3.905 18 C -0.231 4.231 19 C -0.104 4.104 20 C -0.184 4.184 21 C -0.105 4.105 22 C -0.104 4.104 23 C -0.016 4.016 24 C -0.199 4.199 25 C -0.200 4.200 26 C -0.199 4.199 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.136 0.864 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.145 0.855 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.147 0.853 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.099 0.901 45 H 0.072 0.928 46 H 0.065 0.935 47 H 0.064 0.936 48 H 0.072 0.928 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.850 -4.703 -14.223 15.249 hybrid contribution -0.447 0.001 0.830 0.943 sum -3.296 -4.703 -13.393 14.572 Atomic orbital electron populations 1.21677 0.96163 1.00810 1.01634 1.21995 0.95058 0.99163 1.01804 1.21748 0.81916 0.94633 1.04372 1.43425 1.04619 1.63234 1.04330 1.19516 1.07029 1.28559 0.88168 0.88758 1.25339 0.97255 0.93566 1.00606 1.69924 1.30877 1.16849 1.32922 0.86000 0.78670 0.78726 0.82155 1.19088 1.20710 1.20535 1.19779 0.88199 0.83629 0.83855 1.90562 1.13532 1.53726 1.86227 1.22758 0.92263 1.01822 0.86696 1.86260 1.34214 1.86664 1.11649 1.19010 0.91498 0.94867 0.85157 1.21304 0.94008 1.09001 0.98754 1.20874 0.99476 0.98102 0.91988 1.20956 0.93484 1.05398 0.98565 1.20963 0.95053 0.98629 0.95888 1.19276 0.94951 1.05234 0.90920 1.19305 0.89724 0.97007 0.95583 1.21979 1.00308 1.01253 0.96387 1.21912 1.01085 0.94917 1.02043 1.21906 1.01078 0.95979 1.00924 0.92587 0.93201 0.93333 0.93363 0.91419 0.86424 0.93656 0.92173 0.90464 0.90722 0.85480 0.86224 0.86407 0.85345 0.92633 0.92476 0.92651 0.90100 0.92830 0.93524 0.93573 0.92835 0.90167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.91 37.15 0.37 -1.64 16 2 C -0.14 -2.44 6.17 -26.73 -0.16 -2.61 16 3 C 0.10 2.02 4.72 -4.04 -0.02 2.00 16 4 N -0.44 -10.73 2.56 -114.81 -0.29 -11.03 16 5 C -0.31 -8.26 8.98 -14.93 -0.13 -8.40 16 6 H 0.09 2.70 7.70 -52.48 -0.40 2.29 16 7 C 0.04 0.94 4.92 -17.47 -0.09 0.85 16 8 N -0.87 -22.66 11.33 55.50 0.63 -22.03 16 9 Si 0.92 20.13 29.61 -169.99 -5.03 15.10 16 10 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 13 C 0.46 11.16 7.67 -10.99 -0.08 11.08 16 14 O -0.56 -15.68 16.32 -14.36 -0.23 -15.92 16 15 C 0.04 0.82 3.83 36.01 0.14 0.96 16 16 O -0.28 -5.24 5.34 -39.34 -0.21 -5.45 16 17 C 0.14 2.29 6.28 -39.21 -0.25 2.04 16 18 C -0.21 -3.01 9.04 -39.43 -0.36 -3.36 16 19 C -0.09 -1.04 10.04 -39.61 -0.40 -1.44 16 20 C -0.17 -1.90 10.04 -39.56 -0.40 -2.30 16 21 C -0.09 -1.07 8.97 -39.61 -0.36 -1.43 16 22 C -0.10 -1.51 4.77 -104.47 -0.50 -2.01 16 23 C -0.02 -0.23 0.75 -155.66 -0.12 -0.34 16 24 C -0.14 -1.56 7.13 37.16 0.27 -1.29 16 25 C -0.14 -2.20 8.26 37.16 0.31 -1.89 16 26 C -0.14 -2.14 8.26 37.16 0.31 -1.83 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.05 0.79 6.59 -51.93 -0.34 0.45 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.12 2.71 5.34 -51.93 -0.28 2.43 16 33 H 0.05 0.85 6.66 -51.93 -0.35 0.51 16 34 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 35 H 0.08 1.36 6.94 -51.93 -0.36 1.00 16 36 H 0.07 1.25 6.04 -51.93 -0.31 0.94 16 37 H 0.13 1.67 6.30 -52.49 -0.33 1.34 16 38 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 39 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 40 H 0.13 1.29 5.89 -52.49 -0.31 0.98 16 41 H 0.05 0.56 7.52 -51.93 -0.39 0.17 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.05 0.55 7.51 -51.93 -0.39 0.16 16 44 H 0.08 1.52 6.14 -51.93 -0.32 1.20 16 45 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.08 1.47 6.14 -51.93 -0.32 1.15 16 LS Contribution 382.69 15.07 5.77 5.77 Total: -1.00 -30.17 382.69 -8.73 -38.90 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -7.89 Total: 6.26 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -1.47 Total: -11.61 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 0.34 Total: -33.06 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.44 Total: -21.36 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.10 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.17 -8.73 -38.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060541886.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.840 kcal (2) G-P(sol) polarization free energy of solvation -30.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds