Wall clock time and date at job start Tue Mar 31 2020 12:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46876 * 2 1 4 4 N 1.46504 * 109.47079 * 180.02562 * 3 2 1 5 5 C 1.36910 * 119.99826 * 270.00258 * 4 3 2 6 6 H 1.07998 * 119.99681 * 138.87131 * 5 4 3 7 7 C 1.39022 * 119.99922 * 318.86488 * 5 4 3 8 8 N 1.31378 * 119.99784 * 161.96019 * 7 5 4 9 9 Si 1.86798 * 120.00134 * 341.96370 * 7 5 4 10 10 H 1.48501 * 109.47285 * 95.25979 * 9 7 5 11 11 H 1.48495 * 109.47259 * 215.26138 * 9 7 5 12 12 H 1.48502 * 109.47147 * 335.26502 * 9 7 5 13 13 C 1.34769 * 120.00023 * 90.00079 * 4 3 2 14 14 O 1.21620 * 120.00506 * 3.42004 * 13 4 3 15 15 C 1.47499 * 119.99951 * 183.42582 * 13 4 3 16 16 C 1.39796 * 120.09396 * 147.64338 * 15 13 4 17 17 C 1.37690 * 119.90727 * 180.29451 * 16 15 13 18 18 C 1.39016 * 120.08908 * 359.45141 * 17 16 15 19 19 O 1.35716 * 119.90566 * 180.25770 * 18 17 16 20 20 C 1.42898 * 117.00002 * 0.29004 * 19 18 17 21 21 C 1.52998 * 109.47259 * 180.02562 * 20 19 18 22 22 C 1.52994 * 109.47131 * 180.02562 * 21 20 19 23 23 C 1.53007 * 109.47301 * 65.00067 * 22 21 20 24 24 C 1.53002 * 109.47424 * 184.99583 * 22 21 20 25 25 C 1.39011 * 120.18957 * 0.54790 * 18 17 16 26 26 C 1.37688 * 120.09367 * 359.73157 * 25 18 17 27 27 H 1.08993 * 109.46958 * 60.00280 * 1 2 3 28 28 H 1.09006 * 109.46764 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47254 * 299.99665 * 1 2 3 30 30 H 1.08999 * 109.47254 * 240.00335 * 2 1 3 31 31 H 1.08996 * 109.47393 * 120.00329 * 2 1 3 32 32 H 1.09005 * 109.47327 * 60.00017 * 3 2 1 33 33 H 1.08996 * 109.47561 * 299.99816 * 3 2 1 34 34 H 0.97002 * 119.99787 * 180.02562 * 8 7 5 35 35 H 1.08005 * 120.04804 * 0.02562 * 16 15 13 36 36 H 1.07996 * 119.95778 * 179.72228 * 17 16 15 37 37 H 1.09002 * 109.46786 * 300.00439 * 20 19 18 38 38 H 1.08999 * 109.46973 * 60.00269 * 20 19 18 39 39 H 1.08999 * 109.46684 * 299.99932 * 21 20 19 40 40 H 1.08999 * 109.47368 * 59.99948 * 21 20 19 41 41 H 1.09000 * 109.47517 * 304.99571 * 22 21 20 42 42 H 1.08999 * 109.46713 * 299.99880 * 23 22 21 43 43 H 1.08991 * 109.47206 * 59.99526 * 23 22 21 44 44 H 1.09003 * 109.46914 * 180.02562 * 23 22 21 45 45 H 1.09006 * 109.46775 * 60.00040 * 24 22 21 46 46 H 1.08997 * 109.47503 * 179.97438 * 24 22 21 47 47 H 1.09000 * 109.46764 * 300.00450 * 24 22 21 48 48 H 1.07999 * 119.95593 * 179.70390 * 25 18 17 49 49 H 1.08004 * 120.05133 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1900 1.4423 1.1848 6 1 5.0702 0.8271 1.2997 7 6 3.7526 2.2341 2.2405 8 7 4.1668 1.9869 3.4625 9 14 2.5760 3.6494 1.9215 10 1 1.1814 3.1963 2.1560 11 1 2.8924 4.7728 2.8397 12 1 2.7187 4.1044 0.5151 13 6 4.1783 1.4428 -1.1680 14 8 3.5715 1.5057 -2.2201 15 6 5.6514 1.3665 -1.1698 16 6 6.3183 0.7148 -2.2113 17 6 7.6932 0.6406 -2.2060 18 6 8.4185 1.2225 -1.1727 19 8 9.7738 1.1517 -1.1738 20 6 10.3869 0.4702 -2.2701 21 6 11.9071 0.4924 -2.0986 22 6 12.5634 -0.2366 -3.2727 23 6 12.2909 0.5323 -4.5672 24 6 14.0731 -0.3234 -3.0395 25 6 7.7594 1.8716 -0.1350 26 6 6.3845 1.9454 -0.1297 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.8614 2.5392 4.1991 35 1 5.7557 0.2663 -3.0168 36 1 8.2090 0.1334 -3.0079 37 1 10.0395 -0.5626 -2.2959 38 1 10.1188 0.9672 -3.2025 39 1 12.2546 1.5252 -2.0726 40 1 12.1749 -0.0047 -1.1663 41 1 12.1499 -1.2418 -3.3532 42 1 11.2154 0.5942 -4.7334 43 1 12.7044 1.5375 -4.4866 44 1 12.7582 0.0126 -5.4037 45 1 14.2673 -0.8712 -2.1173 46 1 14.5407 -0.8432 -3.8757 47 1 14.4866 0.6819 -2.9590 48 1 8.3264 2.3182 0.6683 49 1 5.8730 2.4494 0.6770 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060542083.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:38 Heat of formation + Delta-G solvation = -59.851799 kcal Electronic energy + Delta-G solvation = -26806.330345 eV Core-core repulsion = 23119.503777 eV Total energy + Delta-G solvation = -3686.826567 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.97530 -38.99439 -37.21796 -36.15089 -35.29632 -33.10208 -31.72291 -30.79389 -30.17323 -28.96431 -27.48682 -25.97349 -25.04623 -24.06202 -22.39416 -21.53638 -21.10361 -20.22522 -19.22155 -17.98421 -17.38591 -16.37350 -16.19845 -15.78216 -15.16616 -14.88508 -14.66822 -14.32312 -14.23144 -14.03147 -13.66101 -13.53498 -13.35528 -13.03414 -12.86260 -12.68554 -12.59036 -12.47189 -12.32207 -11.91660 -11.75297 -11.64602 -11.62736 -11.45415 -11.13112 -11.05778 -10.97080 -10.94709 -10.87914 -10.51207 -10.41432 -10.27267 -10.03325 -9.78589 -9.23428 -8.66934 -8.45096 -7.79250 -7.67729 -6.53582 -4.15754 1.67167 1.93999 3.01891 3.18288 3.26714 3.30528 3.70176 4.06685 4.30370 4.50248 4.54352 4.56072 4.67028 4.92860 4.94559 5.10837 5.15519 5.31635 5.33412 5.34974 5.37273 5.50409 5.55895 5.58126 5.61340 5.66805 5.72755 5.76130 5.85479 5.90607 5.94923 5.99821 6.02858 6.05275 6.07563 6.28850 6.33827 6.35727 6.41660 6.59062 6.72546 6.73440 6.84756 6.92677 7.17945 7.30244 7.38342 7.74902 8.01530 8.19742 8.86816 9.27806 9.62639 10.54559 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.020291 B = 0.002790 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.599181 B =10031.724370 C =10846.848002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.102 3.898 4 N -0.459 5.459 5 C -0.347 4.347 6 H 0.111 0.889 7 C 0.067 3.933 8 N -0.856 5.856 9 Si 0.874 3.126 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.259 1.259 13 C 0.525 3.475 14 O -0.597 6.597 15 C -0.139 4.139 16 C -0.040 4.040 17 C -0.230 4.230 18 C 0.134 3.866 19 O -0.318 6.318 20 C 0.058 3.942 21 C -0.115 4.115 22 C -0.094 4.094 23 C -0.153 4.153 24 C -0.146 4.146 25 C -0.170 4.170 26 C -0.026 4.026 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.277 0.723 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.055 0.945 47 H 0.056 0.944 48 H 0.128 0.872 49 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.672 -3.222 -8.940 15.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.020 4.020 4 N -0.178 5.178 5 C -0.474 4.474 6 H 0.129 0.871 7 C -0.141 4.141 8 N -0.490 5.490 9 Si 0.702 3.298 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.183 1.183 13 C 0.316 3.684 14 O -0.483 6.483 15 C -0.142 4.142 16 C -0.059 4.059 17 C -0.249 4.249 18 C 0.089 3.911 19 O -0.232 6.232 20 C -0.018 4.018 21 C -0.152 4.152 22 C -0.113 4.113 23 C -0.211 4.211 24 C -0.204 4.204 25 C -0.189 4.189 26 C -0.044 4.044 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.146 0.854 49 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 11.496 -3.065 -9.071 14.961 hybrid contribution -0.655 0.487 -0.014 0.816 sum 10.841 -2.578 -9.085 14.378 Atomic orbital electron populations 1.21709 0.96316 1.01100 1.01396 1.21766 0.94820 0.97865 1.02524 1.21663 0.82485 0.96742 1.01141 1.43590 1.04002 1.64601 1.05640 1.19192 1.13486 1.26638 0.88095 0.87141 1.25358 0.96908 0.97164 0.94689 1.69716 1.43138 1.37436 0.98710 0.86936 0.80837 0.82497 0.79547 1.19935 1.21338 1.18349 1.18193 0.86864 0.79718 0.83673 1.90625 1.70051 1.55821 1.31790 1.19828 0.93873 1.03803 0.96733 1.20919 0.92977 0.95355 0.96634 1.20948 0.94861 1.08372 1.00731 1.19231 0.81467 0.95561 0.94818 1.85980 1.17728 1.73161 1.46289 1.22837 0.93327 0.96568 0.89021 1.21605 0.92428 1.02082 0.99091 1.21047 0.96087 0.99575 0.94563 1.21948 1.01884 1.00416 0.96818 1.21821 0.94890 1.01981 1.01665 1.20484 0.94356 1.05139 0.98912 1.22297 0.91920 0.93619 0.96560 0.93008 0.92994 0.92982 0.92133 0.91166 0.91791 0.91204 0.91293 0.85754 0.86070 0.92251 0.91972 0.90826 0.90791 0.90919 0.92366 0.92429 0.92585 0.92513 0.92545 0.92522 0.85408 0.81062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.91 37.16 0.37 -1.95 16 2 C -0.13 -2.54 6.26 -26.73 -0.17 -2.71 16 3 C 0.10 2.27 4.20 -4.04 -0.02 2.25 16 4 N -0.46 -11.05 2.12 -116.00 -0.25 -11.29 16 5 C -0.35 -8.68 6.55 -14.99 -0.10 -8.78 16 6 H 0.11 2.92 6.44 -52.49 -0.34 2.58 16 7 C 0.07 1.69 5.31 -17.46 -0.09 1.60 16 8 N -0.86 -22.56 13.95 55.50 0.77 -21.79 16 9 Si 0.87 19.97 24.91 -169.99 -4.23 15.74 16 10 H -0.27 -6.01 6.74 56.52 0.38 -5.63 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.26 -6.10 7.11 56.52 0.40 -5.70 16 13 C 0.52 12.65 7.40 -12.49 -0.09 12.56 16 14 O -0.60 -15.35 16.32 5.26 0.09 -15.26 16 15 C -0.14 -3.01 5.52 -104.96 -0.58 -3.59 16 16 C -0.04 -0.75 9.59 -39.20 -0.38 -1.12 16 17 C -0.23 -3.78 9.01 -39.49 -0.36 -4.14 16 18 C 0.13 2.30 6.70 -39.01 -0.26 2.03 16 19 O -0.32 -4.82 10.12 -18.85 -0.19 -5.01 16 20 C 0.06 0.65 4.49 37.16 0.17 0.82 16 21 C -0.11 -1.05 5.05 -26.73 -0.14 -1.18 16 22 C -0.09 -0.70 2.92 -90.62 -0.26 -0.96 16 23 C -0.15 -1.09 8.95 37.16 0.33 -0.76 16 24 C -0.15 -0.95 9.19 37.16 0.34 -0.61 16 25 C -0.17 -3.14 9.97 -39.50 -0.39 -3.53 16 26 C -0.03 -0.54 7.74 -39.20 -0.30 -0.84 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 32 H 0.06 1.43 3.42 -51.93 -0.18 1.25 16 33 H 0.07 1.54 7.37 -51.93 -0.38 1.16 16 34 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 35 H 0.12 2.24 7.96 -52.48 -0.42 1.82 16 36 H 0.12 1.62 6.28 -52.49 -0.33 1.29 16 37 H 0.06 0.64 7.64 -51.93 -0.40 0.24 16 38 H 0.06 0.66 6.09 -51.93 -0.32 0.34 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.13 2.16 8.06 -52.49 -0.42 1.74 16 49 H 0.17 3.84 5.40 -52.48 -0.28 3.55 16 LS Contribution 386.51 15.07 5.82 5.82 Total: -1.00 -28.47 386.51 -7.97 -36.44 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -8.06 Total: 6.26 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -1.93 Total: -10.91 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 0.53 Total: -33.08 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.11 Total: -20.27 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.23 Total: 15.74 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -28.47 -7.97 -36.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060542083.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.414 kcal (2) G-P(sol) polarization free energy of solvation -28.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds