Wall clock time and date at job start Tue Mar 31 2020 12:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46876 * 2 1 4 4 N 1.46504 * 109.47079 * 180.02562 * 3 2 1 5 5 C 1.36910 * 119.99826 * 270.00258 * 4 3 2 6 6 H 1.07998 * 119.99681 * 138.87131 * 5 4 3 7 7 C 1.39022 * 119.99922 * 318.86488 * 5 4 3 8 8 N 1.31378 * 119.99784 * 161.96019 * 7 5 4 9 9 Si 1.86798 * 120.00134 * 341.96370 * 7 5 4 10 10 H 1.48501 * 109.47285 * 95.25979 * 9 7 5 11 11 H 1.48495 * 109.47259 * 215.26138 * 9 7 5 12 12 H 1.48502 * 109.47147 * 335.26502 * 9 7 5 13 13 C 1.34769 * 120.00023 * 90.00079 * 4 3 2 14 14 O 1.21620 * 120.00506 * 3.42004 * 13 4 3 15 15 C 1.47499 * 119.99951 * 183.42582 * 13 4 3 16 16 C 1.39796 * 120.09396 * 147.64338 * 15 13 4 17 17 C 1.37690 * 119.90727 * 180.29451 * 16 15 13 18 18 C 1.39016 * 120.08908 * 359.45141 * 17 16 15 19 19 O 1.35716 * 119.90566 * 180.25770 * 18 17 16 20 20 C 1.42898 * 117.00002 * 0.29004 * 19 18 17 21 21 C 1.52998 * 109.47259 * 180.02562 * 20 19 18 22 22 C 1.52994 * 109.47131 * 180.02562 * 21 20 19 23 23 C 1.53007 * 109.47301 * 65.00067 * 22 21 20 24 24 C 1.53002 * 109.47424 * 184.99583 * 22 21 20 25 25 C 1.39011 * 120.18957 * 0.54790 * 18 17 16 26 26 C 1.37688 * 120.09367 * 359.73157 * 25 18 17 27 27 H 1.08993 * 109.46958 * 60.00280 * 1 2 3 28 28 H 1.09006 * 109.46764 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47254 * 299.99665 * 1 2 3 30 30 H 1.08999 * 109.47254 * 240.00335 * 2 1 3 31 31 H 1.08996 * 109.47393 * 120.00329 * 2 1 3 32 32 H 1.09005 * 109.47327 * 60.00017 * 3 2 1 33 33 H 1.08996 * 109.47561 * 299.99816 * 3 2 1 34 34 H 0.97002 * 119.99787 * 180.02562 * 8 7 5 35 35 H 1.08005 * 120.04804 * 0.02562 * 16 15 13 36 36 H 1.07996 * 119.95778 * 179.72228 * 17 16 15 37 37 H 1.09002 * 109.46786 * 300.00439 * 20 19 18 38 38 H 1.08999 * 109.46973 * 60.00269 * 20 19 18 39 39 H 1.08999 * 109.46684 * 299.99932 * 21 20 19 40 40 H 1.08999 * 109.47368 * 59.99948 * 21 20 19 41 41 H 1.09000 * 109.47517 * 304.99571 * 22 21 20 42 42 H 1.08999 * 109.46713 * 299.99880 * 23 22 21 43 43 H 1.08991 * 109.47206 * 59.99526 * 23 22 21 44 44 H 1.09003 * 109.46914 * 180.02562 * 23 22 21 45 45 H 1.09006 * 109.46775 * 60.00040 * 24 22 21 46 46 H 1.08997 * 109.47503 * 179.97438 * 24 22 21 47 47 H 1.09000 * 109.46764 * 300.00450 * 24 22 21 48 48 H 1.07999 * 119.95593 * 179.70390 * 25 18 17 49 49 H 1.08004 * 120.05133 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1900 1.4423 1.1848 6 1 5.0702 0.8271 1.2997 7 6 3.7526 2.2341 2.2405 8 7 4.1668 1.9869 3.4625 9 14 2.5760 3.6494 1.9215 10 1 1.1814 3.1963 2.1560 11 1 2.8924 4.7728 2.8397 12 1 2.7187 4.1044 0.5151 13 6 4.1783 1.4428 -1.1680 14 8 3.5715 1.5057 -2.2201 15 6 5.6514 1.3665 -1.1698 16 6 6.3183 0.7148 -2.2113 17 6 7.6932 0.6406 -2.2060 18 6 8.4185 1.2225 -1.1727 19 8 9.7738 1.1517 -1.1738 20 6 10.3869 0.4702 -2.2701 21 6 11.9071 0.4924 -2.0986 22 6 12.5634 -0.2366 -3.2727 23 6 12.2909 0.5323 -4.5672 24 6 14.0731 -0.3234 -3.0395 25 6 7.7594 1.8716 -0.1350 26 6 6.3845 1.9454 -0.1297 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.8614 2.5392 4.1991 35 1 5.7557 0.2663 -3.0168 36 1 8.2090 0.1334 -3.0079 37 1 10.0395 -0.5626 -2.2959 38 1 10.1188 0.9672 -3.2025 39 1 12.2546 1.5252 -2.0726 40 1 12.1749 -0.0047 -1.1663 41 1 12.1499 -1.2418 -3.3532 42 1 11.2154 0.5942 -4.7334 43 1 12.7044 1.5375 -4.4866 44 1 12.7582 0.0126 -5.4037 45 1 14.2673 -0.8712 -2.1173 46 1 14.5407 -0.8432 -3.8757 47 1 14.4866 0.6819 -2.9590 48 1 8.3264 2.3182 0.6683 49 1 5.8730 2.4494 0.6770 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060542083.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:37 Heat of formation + Delta-G solvation = -73.471646 kcal Electronic energy + Delta-G solvation = -26806.920945 eV Core-core repulsion = 23119.503777 eV Total energy + Delta-G solvation = -3687.417168 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.45818 -40.56852 -38.38536 -37.24768 -37.03549 -34.78985 -33.57245 -32.11494 -31.47115 -30.11475 -28.01631 -27.60825 -26.88819 -25.08727 -23.89342 -22.83005 -22.66940 -21.03177 -20.88474 -19.54645 -18.87016 -18.11868 -17.37195 -17.16531 -16.61386 -16.41966 -15.93165 -15.73972 -15.64955 -15.25937 -15.02621 -14.75249 -14.68772 -14.43671 -14.38658 -14.06331 -14.02789 -13.51450 -13.31235 -13.27950 -13.17721 -13.01987 -12.76377 -12.61749 -12.59022 -12.48206 -12.15390 -11.92745 -11.86367 -11.75645 -11.75006 -11.52791 -11.47437 -11.34822 -11.09053 -10.56274 -9.96427 -9.68021 -9.13874 -8.50443 -6.14126 0.13102 0.46669 1.17838 1.31019 1.41204 1.95035 2.16393 2.17812 2.56412 2.78700 3.10357 3.80173 3.88591 3.89732 3.92710 4.00905 4.03752 4.12798 4.15589 4.23464 4.33108 4.37307 4.44144 4.48981 4.53422 4.55380 4.64107 4.74136 4.81313 4.84512 4.91550 4.92333 5.01561 5.07734 5.09157 5.11357 5.12459 5.21440 5.26266 5.29663 5.33393 5.36747 5.45052 5.49527 5.50235 5.65152 5.81834 6.05963 6.23927 6.45506 6.91322 7.35180 7.72169 8.61090 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.020291 B = 0.002790 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.599181 B =10031.724370 C =10846.848002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 C 0.096 3.904 4 N -0.468 5.468 5 C -0.337 4.337 6 H 0.089 0.911 7 C 0.037 3.963 8 N -0.889 5.889 9 Si 0.918 3.082 10 H -0.256 1.256 11 H -0.281 1.281 12 H -0.273 1.273 13 C 0.519 3.481 14 O -0.619 6.619 15 C -0.173 4.173 16 C -0.039 4.039 17 C -0.216 4.216 18 C 0.147 3.853 19 O -0.324 6.324 20 C 0.047 3.953 21 C -0.110 4.110 22 C -0.090 4.090 23 C -0.155 4.155 24 C -0.146 4.146 25 C -0.178 4.178 26 C -0.034 4.034 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.281 0.719 35 H 0.132 0.868 36 H 0.159 0.841 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.064 0.936 47 H 0.056 0.944 48 H 0.138 0.862 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.537 -3.850 -10.277 16.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.163 4.163 3 C -0.027 4.027 4 N -0.187 5.187 5 C -0.464 4.464 6 H 0.107 0.893 7 C -0.168 4.168 8 N -0.525 5.525 9 Si 0.744 3.256 10 H -0.181 1.181 11 H -0.208 1.208 12 H -0.198 1.198 13 C 0.311 3.689 14 O -0.507 6.507 15 C -0.176 4.176 16 C -0.058 4.058 17 C -0.235 4.235 18 C 0.101 3.899 19 O -0.237 6.237 20 C -0.027 4.027 21 C -0.148 4.148 22 C -0.109 4.109 23 C -0.212 4.212 24 C -0.203 4.203 25 C -0.196 4.196 26 C -0.053 4.053 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.150 0.850 36 H 0.177 0.823 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.083 0.917 47 H 0.075 0.925 48 H 0.156 0.844 49 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 12.363 -3.701 -10.401 16.574 hybrid contribution -0.725 0.635 0.314 1.014 sum 11.638 -3.066 -10.087 15.703 Atomic orbital electron populations 1.21679 0.93130 1.02946 1.02113 1.21696 0.97567 0.95616 1.01435 1.21813 0.81506 0.98573 1.00772 1.43728 1.04896 1.64761 1.05357 1.18958 1.12994 1.26114 0.88383 0.89306 1.25751 0.98209 0.98484 0.94381 1.69761 1.44753 1.38591 0.99375 0.86241 0.80360 0.80460 0.78495 1.18139 1.20788 1.19792 1.18653 0.88093 0.78918 0.83285 1.90582 1.70890 1.56937 1.32305 1.19811 0.92629 1.06515 0.98628 1.21055 0.94103 0.94801 0.95856 1.21246 0.93792 1.07265 1.01186 1.19230 0.82578 0.94046 0.94031 1.85999 1.16367 1.73360 1.48010 1.23212 0.94338 0.96889 0.88263 1.21616 0.90984 1.02278 0.99891 1.21035 0.96493 0.99531 0.93835 1.21963 1.01785 1.00467 0.96966 1.21819 0.94250 1.02156 1.02099 1.20542 0.93550 1.05569 0.99959 1.21965 0.92948 0.94373 0.96003 0.92044 0.90632 0.92503 0.92943 0.92453 0.92015 0.91482 0.90852 0.85024 0.82317 0.91144 0.90761 0.91048 0.91025 0.90440 0.92626 0.92555 0.91682 0.92469 0.91660 0.92534 0.84391 0.83524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.17 9.91 71.98 0.71 -3.46 16 2 C -0.12 -4.80 6.26 30.59 0.19 -4.61 16 3 C 0.10 4.26 4.20 86.38 0.36 4.62 16 4 N -0.47 -23.12 2.12 -639.18 -1.36 -24.47 16 5 C -0.34 -17.44 6.55 84.09 0.55 -16.89 16 6 H 0.09 4.94 6.44 -2.91 -0.02 4.92 16 7 C 0.04 1.91 5.31 84.95 0.45 2.36 16 8 N -0.89 -47.79 13.95 21.68 0.30 -47.49 16 9 Si 0.92 41.43 24.91 68.60 1.71 43.14 16 10 H -0.26 -10.77 6.74 99.48 0.67 -10.10 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 12 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 13 C 0.52 25.65 7.40 86.69 0.64 26.29 16 14 O -0.62 -32.38 16.32 -4.09 -0.07 -32.45 16 15 C -0.17 -7.61 5.52 -20.08 -0.11 -7.72 16 16 C -0.04 -1.44 9.59 22.52 0.22 -1.22 16 17 C -0.22 -6.61 9.01 22.33 0.20 -6.41 16 18 C 0.15 4.78 6.70 22.64 0.15 4.94 16 19 O -0.32 -9.08 10.12 -90.37 -0.91 -10.00 16 20 C 0.05 0.93 4.49 71.98 0.32 1.25 16 21 C -0.11 -1.75 5.05 30.59 0.15 -1.60 16 22 C -0.09 -1.10 2.92 -10.79 -0.03 -1.13 16 23 C -0.15 -1.80 8.95 71.98 0.64 -1.16 16 24 C -0.15 -1.56 9.19 71.98 0.66 -0.89 16 25 C -0.18 -6.53 9.97 22.33 0.22 -6.31 16 26 C -0.03 -1.47 7.74 22.52 0.17 -1.30 16 27 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 29 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.06 2.75 3.42 -2.38 -0.01 2.74 16 33 H 0.07 2.99 7.37 -2.39 -0.02 2.97 16 34 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 35 H 0.13 4.61 7.96 -2.91 -0.02 4.59 16 36 H 0.16 3.61 6.28 -2.91 -0.02 3.60 16 37 H 0.07 1.26 7.64 -2.39 -0.02 1.25 16 38 H 0.07 1.32 6.09 -2.39 -0.01 1.30 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.05 0.67 6.56 -2.39 -0.02 0.66 16 43 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 46 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.14 4.67 8.06 -2.91 -0.02 4.65 16 49 H 0.15 6.94 5.40 -2.91 -0.02 6.93 16 Total: -1.00 -61.85 386.51 6.08 -55.77 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: 0.89 Total: 28.77 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: 5.52 Total: -13.26 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -1.05 Total: -71.96 kcal Atomic # 8 Polarization: -41.46 SS G_CDS: -0.98 Total: -42.45 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 1.71 Total: 43.14 kcal Total: -61.85 6.08 -55.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060542083.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.703 kcal (2) G-P(sol) polarization free energy of solvation -61.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds