Wall clock time and date at job start Tue Mar 31 2020 13:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46823 * 2 1 4 4 O 1.42903 * 109.47100 * 179.97438 * 3 2 1 5 5 C 1.35904 * 117.00413 * 179.97438 * 4 3 2 6 6 C 1.38853 * 119.98653 * 0.02562 * 5 4 3 7 7 C 1.38237 * 120.24276 * 179.97438 * 6 5 4 8 8 C 1.38011 * 120.20722 * 359.73825 * 7 6 5 9 9 C 1.39561 * 119.96258 * 0.51631 * 8 7 6 10 10 C 1.47855 * 120.11683 * 179.76116 * 9 8 7 11 11 O 1.21555 * 120.00066 * 202.99197 * 10 9 8 12 12 N 1.34774 * 120.00249 * 23.00216 * 10 9 8 13 13 C 1.46498 * 119.99548 * 1.47027 * 12 10 9 14 14 C 1.50701 * 109.47336 * 259.58022 * 13 12 10 15 15 H 1.07997 * 119.99917 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00085 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99862 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00192 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46960 * 60.00639 * 18 16 14 20 20 H 1.48498 * 109.46932 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47113 * 300.00292 * 18 16 14 22 22 C 1.46501 * 120.00193 * 181.47825 * 12 10 9 23 23 C 1.53004 * 109.46811 * 264.18496 * 22 12 10 24 24 C 1.52996 * 109.47122 * 65.83434 * 23 22 12 25 25 C 1.52996 * 109.46673 * 185.83052 * 23 22 12 26 26 C 1.38449 * 119.98628 * 180.02562 * 5 4 3 27 27 H 1.09001 * 109.47626 * 59.99979 * 1 2 3 28 28 H 1.08994 * 109.47242 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47271 * 300.00067 * 1 2 3 30 30 H 1.08997 * 109.46668 * 240.00348 * 2 1 3 31 31 H 1.09000 * 109.47166 * 119.99752 * 2 1 3 32 32 H 1.08992 * 109.47402 * 60.00222 * 3 2 1 33 33 H 1.09002 * 109.47567 * 299.99833 * 3 2 1 34 34 H 1.08010 * 119.87627 * 359.95882 * 6 5 4 35 35 H 1.08006 * 119.89564 * 180.02562 * 7 6 5 36 36 H 1.07998 * 120.02008 * 180.25790 * 8 7 6 37 37 H 1.08994 * 109.47316 * 19.58987 * 13 12 10 38 38 H 1.09008 * 109.47006 * 139.58679 * 13 12 10 39 39 H 0.97004 * 120.00071 * 179.97438 * 17 16 14 40 40 H 1.09004 * 109.46927 * 144.18591 * 22 12 10 41 41 H 1.09001 * 109.47166 * 24.18536 * 22 12 10 42 42 H 1.08996 * 109.47041 * 305.82879 * 23 22 12 43 43 H 1.08998 * 109.47479 * 62.52135 * 24 23 22 44 44 H 1.09000 * 109.47481 * 182.53195 * 24 23 22 45 45 H 1.09004 * 109.46853 * 302.52631 * 24 23 22 46 46 H 1.09000 * 109.47804 * 60.00396 * 25 23 22 47 47 H 1.09003 * 109.46808 * 180.02562 * 25 23 22 48 48 H 1.09005 * 109.47522 * 299.99690 * 25 23 22 49 49 H 1.08002 * 120.10849 * 0.04409 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4689 1.4426 0.0006 5 6 4.0860 2.6535 0.0001 6 6 3.3295 3.8178 -0.0003 7 6 3.9516 5.0523 -0.0003 8 6 5.3291 5.1357 0.0057 9 6 6.0979 3.9709 0.0008 10 6 7.5740 4.0562 0.0019 11 8 8.2369 3.1257 -0.4132 12 7 8.1846 5.1656 0.4632 13 6 7.3867 6.2740 0.9935 14 6 7.2654 7.3515 -0.0531 15 1 7.7353 7.2233 -1.0170 16 6 6.5537 8.5004 0.2195 17 7 5.9811 8.6563 1.3932 18 14 6.4028 9.8357 -1.0780 19 1 5.7388 9.2805 -2.2847 20 1 5.5941 10.9592 -0.5404 21 1 7.7557 10.3292 -1.4402 22 6 9.6461 5.2633 0.4343 23 6 10.2118 4.8498 1.7944 24 6 9.9280 3.3658 2.0351 25 6 11.7227 5.0895 1.8124 26 6 5.4686 2.7256 0.0001 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6766 1.9564 -0.8900 34 1 2.2510 3.7587 -0.0010 35 1 3.3577 5.9544 -0.0002 36 1 5.8120 6.1017 0.0100 37 1 6.3936 5.9121 1.2593 38 1 7.8742 6.6813 1.8794 39 1 5.4807 9.4648 1.5852 40 1 9.9373 6.2909 0.2168 41 1 10.0391 4.6029 -0.3387 42 1 9.7406 5.4418 2.5790 43 1 10.4362 2.7709 1.2762 44 1 10.2910 3.0819 3.0228 45 1 8.8542 3.1873 1.9776 46 1 11.9251 6.1468 1.6410 47 1 12.1259 4.7946 2.7812 48 1 12.1940 4.4975 1.0278 49 1 6.0583 1.8207 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060941413.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:52 Heat of formation + Delta-G solvation = -44.947554 kcal Electronic energy + Delta-G solvation = -27515.180971 eV Core-core repulsion = 23829.000700 eV Total energy + Delta-G solvation = -3686.180271 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.14480 -39.15438 -36.94265 -35.88175 -34.47684 -33.86522 -32.43615 -30.63982 -29.66065 -27.63422 -26.75043 -26.51746 -25.87388 -23.39331 -22.70585 -21.79514 -21.37594 -19.87971 -18.96064 -17.50890 -16.64978 -16.26803 -16.23908 -15.80226 -15.46655 -15.02582 -14.65339 -14.39034 -14.16643 -14.10349 -13.64142 -13.55692 -13.10066 -12.94970 -12.60224 -12.45682 -12.35046 -12.19478 -12.15382 -12.04420 -11.84754 -11.41090 -11.35623 -11.26417 -11.11177 -10.97816 -10.80212 -10.62898 -10.59034 -10.47713 -10.33577 -10.10299 -9.84964 -9.60024 -9.02563 -8.71564 -8.50241 -7.69840 -7.63753 -6.32863 -4.42606 1.43127 1.97970 3.17555 3.22866 3.25756 3.26990 3.54501 3.96960 4.21976 4.44805 4.71599 4.73667 4.96932 5.04384 5.14233 5.21105 5.24393 5.30387 5.34059 5.36291 5.45531 5.48929 5.57471 5.71332 5.83542 5.86382 5.92827 5.99130 6.01357 6.04914 6.08307 6.18101 6.22539 6.32394 6.41634 6.42456 6.46524 6.66661 6.69241 6.75562 6.82651 7.04381 7.08166 7.17816 7.37669 7.52227 7.62659 7.76764 7.88992 8.32622 8.67634 9.00252 9.25428 10.70860 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010137 B = 0.004185 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.546325 B = 6688.326276 C = 8969.828235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.060 3.940 4 O -0.320 6.320 5 C 0.096 3.904 6 C -0.189 4.189 7 C -0.098 4.098 8 C -0.135 4.135 9 C -0.100 4.100 10 C 0.557 3.443 11 O -0.566 6.566 12 N -0.584 5.584 13 C 0.206 3.794 14 C -0.545 4.545 15 H 0.066 0.934 16 C 0.070 3.930 17 N -0.879 5.879 18 Si 0.896 3.104 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.274 1.274 22 C 0.124 3.876 23 C -0.112 4.112 24 C -0.136 4.136 25 C -0.141 4.141 26 C -0.100 4.100 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.215 0.785 37 H 0.070 0.930 38 H 0.033 0.967 39 H 0.270 0.730 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.054 0.946 44 H 0.041 0.959 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.051 0.949 48 H 0.052 0.948 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.120 -9.290 0.326 10.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.016 4.016 4 O -0.234 6.234 5 C 0.052 3.948 6 C -0.208 4.208 7 C -0.116 4.116 8 C -0.152 4.152 9 C -0.103 4.103 10 C 0.346 3.654 11 O -0.448 6.448 12 N -0.313 5.313 13 C 0.087 3.913 14 C -0.583 4.583 15 H 0.084 0.916 16 C -0.135 4.135 17 N -0.515 5.515 18 Si 0.723 3.277 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.199 1.199 22 C 0.001 3.999 23 C -0.132 4.132 24 C -0.193 4.193 25 C -0.199 4.199 26 C -0.120 4.120 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.138 0.862 35 H 0.143 0.857 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.051 0.949 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.070 0.930 48 H 0.071 0.929 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.798 -9.799 0.247 10.914 hybrid contribution -0.505 1.077 -0.547 1.310 sum -5.303 -8.722 -0.300 10.212 Atomic orbital electron populations 1.21688 0.94470 1.02301 1.02199 1.21474 0.95823 0.95194 1.03622 1.22780 0.79247 0.98316 1.01240 1.86009 1.20578 1.27273 1.89588 1.18646 0.91876 0.83842 1.00414 1.21377 0.99418 0.92815 1.07239 1.21023 0.95211 0.96418 0.98985 1.23908 0.94207 1.03265 0.93787 1.19763 0.93537 0.93228 1.03782 1.18184 0.87105 0.82310 0.77800 1.90667 1.66407 1.38159 1.49535 1.48013 1.06576 1.17024 1.59682 1.20353 0.92805 0.83476 0.94712 1.21399 1.34209 1.01903 1.00796 0.91572 1.25001 0.94879 0.97979 0.95684 1.69929 1.32717 1.27911 1.20975 0.86561 0.78566 0.80940 0.81624 1.19754 1.20974 1.19905 1.21393 0.80217 1.01838 0.96463 1.21491 0.95653 0.97223 0.98830 1.21744 1.02007 0.95497 1.00046 1.21745 0.95420 1.01441 1.01267 1.20335 0.91007 0.97906 1.02711 0.92411 0.91900 0.92384 0.90913 0.90903 0.92279 0.92309 0.86187 0.85661 0.76919 0.91285 0.94891 0.92067 0.90347 0.90722 0.91001 0.92719 0.93947 0.92737 0.92634 0.93004 0.92869 0.85048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.69 16 2 C -0.12 -1.14 6.30 -26.73 -0.17 -1.31 16 3 C 0.06 0.69 4.74 37.16 0.18 0.86 16 4 O -0.32 -5.00 10.13 -19.44 -0.20 -5.20 16 5 C 0.10 1.68 6.68 -39.28 -0.26 1.42 16 6 C -0.19 -3.11 9.03 -39.35 -0.36 -3.47 16 7 C -0.10 -1.80 10.03 -39.66 -0.40 -2.20 16 8 C -0.13 -2.82 7.53 -39.17 -0.29 -3.12 16 9 C -0.10 -2.10 5.62 -104.99 -0.59 -2.69 16 10 C 0.56 12.25 6.23 -12.33 -0.08 12.17 16 11 O -0.57 -13.09 14.95 5.32 0.08 -13.01 16 12 N -0.58 -12.42 2.28 -176.17 -0.40 -12.83 16 13 C 0.21 4.74 4.65 -5.19 -0.02 4.72 16 14 C -0.55 -13.31 7.29 -34.44 -0.25 -13.56 16 15 H 0.07 1.65 7.81 -52.49 -0.41 1.24 16 16 C 0.07 1.72 5.29 -17.82 -0.09 1.62 16 17 N -0.88 -22.44 13.29 55.43 0.74 -21.70 16 18 Si 0.90 19.38 29.54 -169.99 -5.02 14.36 16 19 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 22 C 0.12 2.33 4.93 -4.04 -0.02 2.31 16 23 C -0.11 -1.85 3.12 -90.62 -0.28 -2.13 16 24 C -0.14 -2.25 8.30 37.16 0.31 -1.94 16 25 C -0.14 -1.89 9.19 37.16 0.34 -1.54 16 26 C -0.10 -1.94 9.53 -39.02 -0.37 -2.31 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 33 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 34 H 0.12 1.60 6.28 -52.48 -0.33 1.27 16 35 H 0.13 2.11 8.06 -52.48 -0.42 1.69 16 36 H 0.22 4.92 2.51 -52.49 -0.13 4.79 16 37 H 0.07 1.65 4.22 -51.94 -0.22 1.43 16 38 H 0.03 0.80 7.94 -51.92 -0.41 0.39 16 39 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 40 H 0.08 1.46 8.08 -51.93 -0.42 1.04 16 41 H 0.07 1.42 7.27 -51.93 -0.38 1.04 16 42 H 0.07 1.25 7.94 -51.93 -0.41 0.84 16 43 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.05 1.03 6.28 -51.93 -0.33 0.70 16 46 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 49 H 0.13 2.52 7.82 -52.49 -0.41 2.11 16 LS Contribution 389.12 15.07 5.86 5.86 Total: -1.00 -27.05 389.12 -8.96 -36.01 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -8.03 Total: 8.34 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -1.99 Total: -11.85 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: 0.34 Total: -34.52 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.12 Total: -18.20 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -27.05 -8.96 -36.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060941413.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.936 kcal (2) G-P(sol) polarization free energy of solvation -27.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds