Wall clock time and date at job start Tue Mar 31 2020 13:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46823 * 2 1 4 4 O 1.42903 * 109.47100 * 179.97438 * 3 2 1 5 5 C 1.35904 * 117.00413 * 179.97438 * 4 3 2 6 6 C 1.38853 * 119.98653 * 0.02562 * 5 4 3 7 7 C 1.38237 * 120.24276 * 179.97438 * 6 5 4 8 8 C 1.38011 * 120.20722 * 359.73825 * 7 6 5 9 9 C 1.39561 * 119.96258 * 0.51631 * 8 7 6 10 10 C 1.47855 * 120.11683 * 179.76116 * 9 8 7 11 11 O 1.21555 * 120.00066 * 202.99197 * 10 9 8 12 12 N 1.34774 * 120.00249 * 23.00216 * 10 9 8 13 13 C 1.46498 * 119.99548 * 1.47027 * 12 10 9 14 14 C 1.50701 * 109.47336 * 259.58022 * 13 12 10 15 15 H 1.07997 * 119.99917 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00085 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99862 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00192 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46960 * 60.00639 * 18 16 14 20 20 H 1.48498 * 109.46932 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47113 * 300.00292 * 18 16 14 22 22 C 1.46501 * 120.00193 * 181.47825 * 12 10 9 23 23 C 1.53004 * 109.46811 * 264.18496 * 22 12 10 24 24 C 1.52996 * 109.47122 * 65.83434 * 23 22 12 25 25 C 1.52996 * 109.46673 * 185.83052 * 23 22 12 26 26 C 1.38449 * 119.98628 * 180.02562 * 5 4 3 27 27 H 1.09001 * 109.47626 * 59.99979 * 1 2 3 28 28 H 1.08994 * 109.47242 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47271 * 300.00067 * 1 2 3 30 30 H 1.08997 * 109.46668 * 240.00348 * 2 1 3 31 31 H 1.09000 * 109.47166 * 119.99752 * 2 1 3 32 32 H 1.08992 * 109.47402 * 60.00222 * 3 2 1 33 33 H 1.09002 * 109.47567 * 299.99833 * 3 2 1 34 34 H 1.08010 * 119.87627 * 359.95882 * 6 5 4 35 35 H 1.08006 * 119.89564 * 180.02562 * 7 6 5 36 36 H 1.07998 * 120.02008 * 180.25790 * 8 7 6 37 37 H 1.08994 * 109.47316 * 19.58987 * 13 12 10 38 38 H 1.09008 * 109.47006 * 139.58679 * 13 12 10 39 39 H 0.97004 * 120.00071 * 179.97438 * 17 16 14 40 40 H 1.09004 * 109.46927 * 144.18591 * 22 12 10 41 41 H 1.09001 * 109.47166 * 24.18536 * 22 12 10 42 42 H 1.08996 * 109.47041 * 305.82879 * 23 22 12 43 43 H 1.08998 * 109.47479 * 62.52135 * 24 23 22 44 44 H 1.09000 * 109.47481 * 182.53195 * 24 23 22 45 45 H 1.09004 * 109.46853 * 302.52631 * 24 23 22 46 46 H 1.09000 * 109.47804 * 60.00396 * 25 23 22 47 47 H 1.09003 * 109.46808 * 180.02562 * 25 23 22 48 48 H 1.09005 * 109.47522 * 299.99690 * 25 23 22 49 49 H 1.08002 * 120.10849 * 0.04409 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4689 1.4426 0.0006 5 6 4.0860 2.6535 0.0001 6 6 3.3295 3.8178 -0.0003 7 6 3.9516 5.0523 -0.0003 8 6 5.3291 5.1357 0.0057 9 6 6.0979 3.9709 0.0008 10 6 7.5740 4.0562 0.0019 11 8 8.2369 3.1257 -0.4132 12 7 8.1846 5.1656 0.4632 13 6 7.3867 6.2740 0.9935 14 6 7.2654 7.3515 -0.0531 15 1 7.7353 7.2233 -1.0170 16 6 6.5537 8.5004 0.2195 17 7 5.9811 8.6563 1.3932 18 14 6.4028 9.8357 -1.0780 19 1 5.7388 9.2805 -2.2847 20 1 5.5941 10.9592 -0.5404 21 1 7.7557 10.3292 -1.4402 22 6 9.6461 5.2633 0.4343 23 6 10.2118 4.8498 1.7944 24 6 9.9280 3.3658 2.0351 25 6 11.7227 5.0895 1.8124 26 6 5.4686 2.7256 0.0001 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6766 1.9564 -0.8900 34 1 2.2510 3.7587 -0.0010 35 1 3.3577 5.9544 -0.0002 36 1 5.8120 6.1017 0.0100 37 1 6.3936 5.9121 1.2593 38 1 7.8742 6.6813 1.8794 39 1 5.4807 9.4648 1.5852 40 1 9.9373 6.2909 0.2168 41 1 10.0391 4.6029 -0.3387 42 1 9.7406 5.4418 2.5790 43 1 10.4362 2.7709 1.2762 44 1 10.2910 3.0819 3.0228 45 1 8.8542 3.1873 1.9776 46 1 11.9251 6.1468 1.6410 47 1 12.1259 4.7946 2.7812 48 1 12.1940 4.4975 1.0278 49 1 6.0583 1.8207 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060941413.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:51 Heat of formation + Delta-G solvation = -56.664277 kcal Electronic energy + Delta-G solvation = -27515.689046 eV Core-core repulsion = 23829.000700 eV Total energy + Delta-G solvation = -3686.688346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.66998 -40.57936 -38.31238 -37.52272 -35.98079 -34.76479 -34.22908 -32.10986 -31.08464 -29.39990 -28.04073 -27.52599 -27.26700 -25.14456 -24.10054 -23.24981 -22.32691 -21.25568 -20.47693 -18.99925 -18.53209 -17.82436 -17.22567 -17.15153 -17.07626 -16.49969 -16.36919 -15.96215 -15.49082 -15.06911 -15.05441 -14.77851 -14.53945 -14.42656 -14.24804 -13.88657 -13.63166 -13.56726 -13.29185 -13.10101 -12.94435 -12.86941 -12.71762 -12.65285 -12.38170 -12.28721 -12.23643 -12.11598 -11.83380 -11.75445 -11.64415 -11.55385 -11.52828 -11.27552 -10.77090 -10.55422 -10.01469 -9.42370 -9.09161 -8.22070 -6.37879 -0.08053 0.49600 1.45082 1.46911 1.53800 1.89341 2.05324 2.36578 2.48693 2.89459 3.06249 3.65010 3.82515 3.92996 3.96622 3.99990 4.05111 4.12840 4.18744 4.31211 4.32258 4.49820 4.56972 4.57289 4.60659 4.66588 4.74783 4.79184 4.83922 4.87847 4.92102 4.95975 5.00565 5.06498 5.12679 5.19489 5.20262 5.24066 5.26714 5.36084 5.41267 5.45292 5.54357 5.60307 5.65280 5.82044 5.87642 6.00585 6.45590 6.54109 6.77991 7.24372 7.36231 8.81350 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010137 B = 0.004185 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.546325 B = 6688.326276 C = 8969.828235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 C 0.048 3.952 4 O -0.330 6.330 5 C 0.106 3.894 6 C -0.174 4.174 7 C -0.098 4.098 8 C -0.157 4.157 9 C -0.118 4.118 10 C 0.551 3.449 11 O -0.585 6.585 12 N -0.585 5.585 13 C 0.222 3.778 14 C -0.550 4.550 15 H 0.055 0.945 16 C 0.036 3.964 17 N -0.903 5.903 18 Si 0.951 3.049 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.274 1.274 22 C 0.120 3.880 23 C -0.108 4.108 24 C -0.128 4.128 25 C -0.134 4.134 26 C -0.114 4.114 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.159 0.841 35 H 0.141 0.859 36 H 0.194 0.806 37 H 0.064 0.936 38 H 0.014 0.986 39 H 0.272 0.728 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.051 0.949 44 H 0.065 0.935 45 H 0.024 0.976 46 H 0.060 0.940 47 H 0.070 0.930 48 H 0.060 0.940 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.567 -9.551 0.187 11.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.159 4.159 3 C -0.027 4.027 4 O -0.245 6.245 5 C 0.061 3.939 6 C -0.193 4.193 7 C -0.116 4.116 8 C -0.174 4.174 9 C -0.121 4.121 10 C 0.341 3.659 11 O -0.469 6.469 12 N -0.313 5.313 13 C 0.102 3.898 14 C -0.588 4.588 15 H 0.073 0.927 16 C -0.167 4.167 17 N -0.540 5.540 18 Si 0.776 3.224 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.199 1.199 22 C -0.003 4.003 23 C -0.127 4.127 24 C -0.186 4.186 25 C -0.191 4.191 26 C -0.133 4.133 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.177 0.823 35 H 0.159 0.841 36 H 0.210 0.790 37 H 0.081 0.919 38 H 0.032 0.968 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.044 0.956 46 H 0.079 0.921 47 H 0.089 0.911 48 H 0.079 0.921 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.241 -10.065 0.112 11.844 hybrid contribution -0.144 1.051 -0.501 1.173 sum -6.385 -9.014 -0.389 11.053 Atomic orbital electron populations 1.21677 0.92538 1.03266 1.02761 1.21505 0.97322 0.93641 1.03401 1.23191 0.76845 1.00256 1.02404 1.86026 1.23127 1.26261 1.89082 1.18659 0.91312 0.85049 0.98859 1.21674 1.01228 0.91376 1.05002 1.21207 0.94194 0.97977 0.98263 1.23662 0.95611 1.02168 0.95984 1.19739 0.92926 0.94071 1.05395 1.18452 0.87827 0.82109 0.77463 1.90630 1.66991 1.38653 1.50578 1.48042 1.07510 1.16483 1.59308 1.20073 0.92500 0.83546 0.93722 1.21435 1.34308 1.02586 1.00483 0.92694 1.25567 0.94434 0.99496 0.97186 1.70004 1.33251 1.28503 1.22251 0.85704 0.78410 0.78738 0.79514 1.19576 1.20349 1.19908 1.21558 0.79038 1.01661 0.98005 1.21445 0.97794 0.96794 0.96681 1.21670 1.00049 0.95554 1.01309 1.21694 0.92692 1.02057 1.02685 1.20341 0.92279 0.97037 1.03686 0.91828 0.90813 0.91833 0.91191 0.91191 0.91053 0.91017 0.82311 0.84135 0.79040 0.91874 0.96797 0.91852 0.90562 0.91134 0.92201 0.92982 0.91607 0.95649 0.92090 0.91123 0.92086 0.85663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.91 71.98 0.71 -0.92 16 2 C -0.12 -1.95 6.30 30.59 0.19 -1.76 16 3 C 0.05 0.96 4.74 71.98 0.34 1.30 16 4 O -0.33 -9.77 10.13 -92.47 -0.94 -10.71 16 5 C 0.11 3.59 6.68 22.47 0.15 3.74 16 6 C -0.17 -5.32 9.03 22.42 0.20 -5.12 16 7 C -0.10 -3.50 10.03 22.22 0.22 -3.28 16 8 C -0.16 -6.70 7.53 22.54 0.17 -6.53 16 9 C -0.12 -5.13 5.62 -20.10 -0.11 -5.24 16 10 C 0.55 25.31 6.23 86.79 0.54 25.85 16 11 O -0.58 -28.14 14.95 -3.89 -0.06 -28.20 16 12 N -0.59 -25.99 2.28 -829.54 -1.89 -27.87 16 13 C 0.22 10.63 4.65 85.63 0.40 11.02 16 14 C -0.55 -27.56 7.29 25.60 0.19 -27.37 16 15 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 16 C 0.04 1.80 5.29 84.65 0.45 2.24 16 17 N -0.90 -46.46 13.29 21.45 0.28 -46.18 16 18 Si 0.95 39.66 29.54 68.60 2.03 41.68 16 19 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 20 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 21 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 22 C 0.12 4.65 4.93 86.38 0.43 5.07 16 23 C -0.11 -3.56 3.12 -10.80 -0.03 -3.60 16 24 C -0.13 -4.30 8.30 71.98 0.60 -3.70 16 25 C -0.13 -3.40 9.19 71.98 0.66 -2.74 16 26 C -0.11 -4.48 9.53 22.63 0.22 -4.27 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.29 7.66 -2.39 -0.02 1.28 16 33 H 0.07 1.29 7.66 -2.39 -0.02 1.27 16 34 H 0.16 3.58 6.28 -2.91 -0.02 3.56 16 35 H 0.14 4.51 8.06 -2.91 -0.02 4.48 16 36 H 0.19 9.13 2.51 -2.91 -0.01 9.12 16 37 H 0.06 3.15 4.22 -2.40 -0.01 3.14 16 38 H 0.01 0.71 7.94 -2.38 -0.02 0.69 16 39 H 0.27 13.27 8.31 -92.71 -0.77 12.50 16 40 H 0.08 2.94 8.08 -2.39 -0.02 2.92 16 41 H 0.07 2.77 7.27 -2.39 -0.02 2.75 16 42 H 0.06 2.12 7.94 -2.39 -0.02 2.10 16 43 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.06 1.85 8.14 -2.39 -0.02 1.84 16 45 H 0.02 0.97 6.28 -2.38 -0.01 0.96 16 46 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 49 H 0.13 4.98 7.82 -2.91 -0.02 4.96 16 Total: -1.00 -59.14 389.12 5.67 -53.47 By element: Atomic # 1 Polarization: 32.18 SS G_CDS: 0.93 Total: 33.11 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: 5.32 Total: -15.30 kcal Atomic # 7 Polarization: -72.45 SS G_CDS: -1.60 Total: -74.05 kcal Atomic # 8 Polarization: -37.91 SS G_CDS: -1.00 Total: -38.91 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.68 kcal Total: -59.14 5.67 -53.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060941413.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.197 kcal (2) G-P(sol) polarization free energy of solvation -59.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds