Wall clock time and date at job start Tue Mar 31 2020 12:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47415 * 2 1 4 4 N 1.46501 * 109.47531 * 180.02562 * 3 2 1 5 5 C 1.37097 * 119.99946 * 264.77429 * 4 3 2 6 6 H 1.07998 * 120.00202 * 138.85140 * 5 4 3 7 7 C 1.38952 * 119.99559 * 318.85103 * 5 4 3 8 8 N 1.31405 * 120.00473 * 341.82334 * 7 5 4 9 9 Si 1.86808 * 119.99653 * 161.82904 * 7 5 4 10 10 H 1.48505 * 109.47076 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47302 * 119.99773 * 9 7 5 12 12 H 1.48507 * 109.46791 * 239.99754 * 9 7 5 13 13 C 1.34777 * 120.00168 * 84.76719 * 4 3 2 14 14 O 1.21288 * 120.00005 * 180.02562 * 13 4 3 15 15 C 1.50704 * 119.99625 * 0.02562 * 13 4 3 16 16 C 1.53009 * 109.46800 * 179.97438 * 15 13 4 17 17 O 1.42900 * 109.46741 * 179.97438 * 16 15 13 18 18 C 1.35901 * 116.99643 * 179.97438 * 17 16 15 19 19 C 1.38735 * 120.05337 * 179.97438 * 18 17 16 20 20 C 1.38140 * 119.94000 * 180.02562 * 19 18 17 21 21 C 1.38271 * 120.05939 * 0.02562 * 20 19 18 22 22 C 1.50704 * 119.94458 * 179.97438 * 21 20 19 23 23 C 1.53000 * 109.46761 * 239.99747 * 22 21 20 24 24 C 1.52995 * 109.46942 * 119.99834 * 22 21 20 25 25 C 1.38264 * 120.11003 * 0.25120 * 21 20 19 26 26 C 1.38142 * 120.05539 * 359.45216 * 25 21 20 27 27 H 1.08997 * 109.47368 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46979 * 300.00158 * 1 2 3 29 29 H 1.09007 * 109.47251 * 59.99886 * 1 2 3 30 30 H 1.09007 * 109.46698 * 240.00229 * 2 1 3 31 31 H 1.09000 * 109.47278 * 120.00772 * 2 1 3 32 32 H 1.09002 * 109.47175 * 59.99963 * 3 2 1 33 33 H 1.09009 * 109.47431 * 300.00571 * 3 2 1 34 34 H 0.96995 * 120.00354 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47252 * 59.99634 * 15 13 4 36 36 H 1.09005 * 109.46901 * 299.99414 * 15 13 4 37 37 H 1.08999 * 109.46769 * 59.99844 * 16 15 13 38 38 H 1.09004 * 109.46698 * 299.99914 * 16 15 13 39 39 H 1.07998 * 120.02969 * 0.02562 * 19 18 17 40 40 H 1.08006 * 119.97171 * 179.97438 * 20 19 18 41 41 H 1.08997 * 109.46793 * 359.97438 * 22 21 20 42 42 H 1.09004 * 109.47269 * 60.00343 * 23 22 21 43 43 H 1.08999 * 109.46924 * 179.97438 * 23 22 21 44 44 H 1.08993 * 109.47361 * 300.00099 * 23 22 21 45 45 H 1.09006 * 109.46918 * 179.97438 * 24 22 21 46 46 H 1.09002 * 109.47256 * 299.99798 * 24 22 21 47 47 H 1.08997 * 109.47436 * 60.00321 * 24 22 21 48 48 H 1.07995 * 119.97125 * 179.70756 * 25 21 20 49 49 H 1.07996 * 120.03350 * 180.25012 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1910 1.5504 1.1815 6 1 5.0710 0.9481 1.3521 7 6 3.7539 2.4349 2.1600 8 7 2.9286 3.4077 1.8451 9 14 4.3399 2.2411 3.9231 10 1 5.2567 1.0765 4.0149 11 1 5.0576 3.4710 4.3443 12 1 3.1707 2.0214 4.8120 13 6 4.1784 1.3362 -1.1632 14 8 5.3913 1.3357 -1.1637 15 6 3.4243 1.2179 -2.4627 16 6 4.4182 1.1126 -3.6213 17 8 3.7031 0.9998 -4.8533 18 6 4.4428 0.8970 -5.9887 19 6 3.8136 0.7839 -7.2200 20 6 4.5678 0.6790 -8.3726 21 6 5.9486 0.6862 -8.2999 22 6 6.7688 0.5710 -9.5589 23 6 7.6519 -0.6759 -9.4798 24 6 7.6510 1.8121 -9.7081 25 6 6.5780 0.7931 -7.0734 26 6 5.8284 0.9044 -5.9184 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 2.6238 4.0253 2.5281 35 1 2.7979 2.0991 -2.6007 36 1 2.7974 0.3265 -2.4391 37 1 5.0449 0.2315 -3.4833 38 1 5.0448 2.0042 -3.6446 39 1 2.7352 0.7778 -7.2774 40 1 4.0785 0.5905 -9.3314 41 1 6.1045 0.4914 -10.4193 42 1 7.0235 -1.5601 -9.3735 43 1 8.2449 -0.7595 -10.3906 44 1 8.3162 -0.5967 -8.6194 45 1 8.2446 1.7286 -10.6185 46 1 7.0218 2.7005 -9.7644 47 1 8.3153 1.8913 -8.8476 48 1 7.6566 0.7937 -7.0188 49 1 6.3204 0.9919 -4.9611 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067212288.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:24 Heat of formation + Delta-G solvation = -72.333198 kcal Electronic energy + Delta-G solvation = -26383.396233 eV Core-core repulsion = 22696.028431 eV Total energy + Delta-G solvation = -3687.367801 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.18062 -38.79216 -37.94187 -35.36146 -34.87917 -32.91702 -31.47549 -31.13955 -30.85173 -28.70750 -27.34628 -26.02707 -25.08652 -23.64183 -23.28666 -21.71411 -20.95777 -20.11649 -18.84637 -18.09144 -16.87327 -16.34472 -15.98672 -15.63733 -15.44907 -14.88825 -14.57083 -14.34207 -14.24412 -14.09345 -13.80438 -13.63391 -13.40758 -13.35442 -12.91684 -12.73281 -12.62628 -12.47985 -12.22431 -11.74686 -11.68522 -11.49880 -11.41975 -11.34968 -11.18570 -11.10777 -10.97026 -10.92181 -10.67717 -10.50581 -10.44113 -10.32614 -10.23916 -9.92749 -8.99163 -8.95744 -8.49795 -7.99873 -7.46227 -6.35173 -4.04180 1.35373 1.44065 3.14106 3.23427 3.27382 3.34189 3.75607 3.85396 4.15570 4.53353 4.62863 4.84743 4.90611 4.97228 5.00469 5.02577 5.24927 5.30133 5.33500 5.36136 5.40467 5.45172 5.56080 5.59047 5.61856 5.63165 5.68818 5.72174 5.75418 5.85850 6.00053 6.02392 6.04267 6.08230 6.14366 6.18593 6.27876 6.33967 6.38334 6.44758 6.45480 6.59673 6.61419 6.82488 6.89062 7.21547 7.55802 7.57238 8.25977 8.46561 9.14532 9.35033 9.95713 10.69907 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.020642 B = 0.002383 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.110449 B =11744.654190 C =12627.292367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.107 3.893 4 N -0.438 5.438 5 C -0.309 4.309 6 H 0.089 0.911 7 C 0.039 3.961 8 N -0.870 5.870 9 Si 0.918 3.082 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.280 1.280 13 C 0.466 3.534 14 O -0.584 6.584 15 C -0.134 4.134 16 C 0.080 3.920 17 O -0.319 6.319 18 C 0.136 3.864 19 C -0.155 4.155 20 C -0.081 4.081 21 C -0.124 4.124 22 C -0.050 4.050 23 C -0.145 4.145 24 C -0.145 4.145 25 C -0.074 4.074 26 C -0.205 4.205 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.049 0.951 34 H 0.267 0.733 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.056 0.944 48 H 0.121 0.879 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.176 -5.417 -18.396 19.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C -0.017 4.017 4 N -0.156 5.156 5 C -0.437 4.437 6 H 0.106 0.894 7 C -0.166 4.166 8 N -0.508 5.508 9 Si 0.744 3.256 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.206 1.206 13 C 0.254 3.746 14 O -0.468 6.468 15 C -0.175 4.175 16 C 0.004 3.996 17 O -0.233 6.233 18 C 0.090 3.910 19 C -0.174 4.174 20 C -0.099 4.099 21 C -0.125 4.125 22 C -0.069 4.069 23 C -0.202 4.202 24 C -0.202 4.202 25 C -0.092 4.092 26 C -0.224 4.224 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.123 0.877 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.139 0.861 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.470 -5.247 -18.225 18.971 hybrid contribution 0.221 0.088 1.058 1.085 sum 0.690 -5.159 -17.167 17.939 Atomic orbital electron populations 1.21680 0.96270 1.00741 1.01614 1.21989 0.94995 0.99251 1.01750 1.21574 0.82105 0.94359 1.03654 1.43413 1.04540 1.62989 1.04682 1.19416 1.12028 1.21534 0.90751 0.89351 1.25438 0.96990 0.93526 1.00610 1.69928 1.33458 1.13414 1.33953 0.86012 0.78645 0.78572 0.82341 1.19163 1.20717 1.20583 1.20037 0.87890 0.82146 0.84558 1.90526 1.14048 1.55275 1.86941 1.21533 0.98962 1.04276 0.92687 1.22522 0.94490 1.02401 0.80138 1.85998 1.36251 1.87444 1.13613 1.19058 0.90043 0.95143 0.86767 1.20405 1.00369 1.06852 0.89769 1.20792 0.92981 0.98711 0.97435 1.19702 0.93626 1.04466 0.94671 1.20022 0.96335 0.95595 0.94917 1.21870 0.99421 0.97201 1.01706 1.21869 0.99420 0.97288 1.01625 1.20744 0.99522 0.97582 0.91328 1.21414 0.93060 1.07771 1.00114 0.93409 0.92738 0.93079 0.93090 0.91671 0.87734 0.93216 0.92257 0.89108 0.89370 0.91410 0.91267 0.85367 0.85797 0.90753 0.92569 0.92634 0.92465 0.92635 0.92541 0.92466 0.86096 0.84961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 37.16 0.37 -1.72 16 2 C -0.14 -2.49 6.17 -26.74 -0.16 -2.66 16 3 C 0.11 2.28 4.69 -4.04 -0.02 2.26 16 4 N -0.44 -10.92 2.50 -114.81 -0.29 -11.21 16 5 C -0.31 -8.47 8.84 -14.93 -0.13 -8.61 16 6 H 0.09 2.53 7.82 -52.49 -0.41 2.12 16 7 C 0.04 1.02 4.95 -17.47 -0.09 0.94 16 8 N -0.87 -23.32 11.61 55.50 0.64 -22.68 16 9 Si 0.92 20.46 29.59 -169.99 -5.03 15.43 16 10 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 13 C 0.47 11.22 7.59 -10.98 -0.08 11.13 16 14 O -0.58 -15.95 15.89 5.55 0.09 -15.86 16 15 C -0.13 -2.51 4.68 -27.88 -0.13 -2.64 16 16 C 0.08 1.39 4.03 37.16 0.15 1.54 16 17 O -0.32 -5.22 10.14 -19.43 -0.20 -5.42 16 18 C 0.14 2.01 6.69 -39.21 -0.26 1.75 16 19 C -0.16 -1.96 9.99 -39.43 -0.39 -2.36 16 20 C -0.08 -0.88 9.66 -39.60 -0.38 -1.26 16 21 C -0.12 -1.34 4.78 -104.60 -0.50 -1.84 16 22 C -0.05 -0.42 3.09 -91.77 -0.28 -0.70 16 23 C -0.14 -1.11 9.00 37.16 0.33 -0.78 16 24 C -0.14 -1.13 9.01 37.16 0.33 -0.79 16 25 C -0.07 -0.88 8.70 -39.61 -0.34 -1.22 16 26 C -0.20 -2.87 9.04 -39.43 -0.36 -3.23 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.68 8.14 -51.92 -0.42 0.25 16 30 H 0.05 0.86 6.60 -51.93 -0.34 0.52 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.10 2.46 5.76 -51.93 -0.30 2.16 16 33 H 0.05 0.98 6.66 -51.92 -0.35 0.63 16 34 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 35 H 0.09 1.63 7.41 -51.93 -0.38 1.24 16 36 H 0.09 1.50 6.54 -51.93 -0.34 1.16 16 37 H 0.07 1.19 7.62 -51.93 -0.40 0.79 16 38 H 0.07 1.25 7.62 -51.93 -0.40 0.86 16 39 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.12 1.03 7.94 -52.48 -0.42 0.61 16 41 H 0.07 0.55 7.87 -51.93 -0.41 0.14 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.45 7.37 -51.93 -0.38 0.07 16 45 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.46 7.40 -51.93 -0.38 0.07 16 48 H 0.12 1.24 7.09 -52.49 -0.37 0.87 16 49 H 0.13 1.90 6.30 -52.49 -0.33 1.56 16 LS Contribution 393.38 15.07 5.93 5.93 Total: -1.00 -30.38 393.38 -8.96 -39.33 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -8.15 Total: 4.66 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -1.95 Total: -10.19 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.36 Total: -33.88 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.11 Total: -21.28 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.03 Total: 15.43 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.38 -8.96 -39.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067212288.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.003 kcal (2) G-P(sol) polarization free energy of solvation -30.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds