Wall clock time and date at job start Tue Mar 31 2020 12:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47415 * 2 1 4 4 N 1.46501 * 109.47531 * 180.02562 * 3 2 1 5 5 C 1.37097 * 119.99946 * 264.77429 * 4 3 2 6 6 H 1.07998 * 120.00202 * 138.85140 * 5 4 3 7 7 C 1.38952 * 119.99559 * 318.85103 * 5 4 3 8 8 N 1.31405 * 120.00473 * 341.82334 * 7 5 4 9 9 Si 1.86808 * 119.99653 * 161.82904 * 7 5 4 10 10 H 1.48505 * 109.47076 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47302 * 119.99773 * 9 7 5 12 12 H 1.48507 * 109.46791 * 239.99754 * 9 7 5 13 13 C 1.34777 * 120.00168 * 84.76719 * 4 3 2 14 14 O 1.21288 * 120.00005 * 180.02562 * 13 4 3 15 15 C 1.50704 * 119.99625 * 0.02562 * 13 4 3 16 16 C 1.53009 * 109.46800 * 179.97438 * 15 13 4 17 17 O 1.42900 * 109.46741 * 179.97438 * 16 15 13 18 18 C 1.35901 * 116.99643 * 179.97438 * 17 16 15 19 19 C 1.38735 * 120.05337 * 179.97438 * 18 17 16 20 20 C 1.38140 * 119.94000 * 180.02562 * 19 18 17 21 21 C 1.38271 * 120.05939 * 0.02562 * 20 19 18 22 22 C 1.50704 * 119.94458 * 179.97438 * 21 20 19 23 23 C 1.53000 * 109.46761 * 239.99747 * 22 21 20 24 24 C 1.52995 * 109.46942 * 119.99834 * 22 21 20 25 25 C 1.38264 * 120.11003 * 0.25120 * 21 20 19 26 26 C 1.38142 * 120.05539 * 359.45216 * 25 21 20 27 27 H 1.08997 * 109.47368 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46979 * 300.00158 * 1 2 3 29 29 H 1.09007 * 109.47251 * 59.99886 * 1 2 3 30 30 H 1.09007 * 109.46698 * 240.00229 * 2 1 3 31 31 H 1.09000 * 109.47278 * 120.00772 * 2 1 3 32 32 H 1.09002 * 109.47175 * 59.99963 * 3 2 1 33 33 H 1.09009 * 109.47431 * 300.00571 * 3 2 1 34 34 H 0.96995 * 120.00354 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47252 * 59.99634 * 15 13 4 36 36 H 1.09005 * 109.46901 * 299.99414 * 15 13 4 37 37 H 1.08999 * 109.46769 * 59.99844 * 16 15 13 38 38 H 1.09004 * 109.46698 * 299.99914 * 16 15 13 39 39 H 1.07998 * 120.02969 * 0.02562 * 19 18 17 40 40 H 1.08006 * 119.97171 * 179.97438 * 20 19 18 41 41 H 1.08997 * 109.46793 * 359.97438 * 22 21 20 42 42 H 1.09004 * 109.47269 * 60.00343 * 23 22 21 43 43 H 1.08999 * 109.46924 * 179.97438 * 23 22 21 44 44 H 1.08993 * 109.47361 * 300.00099 * 23 22 21 45 45 H 1.09006 * 109.46918 * 179.97438 * 24 22 21 46 46 H 1.09002 * 109.47256 * 299.99798 * 24 22 21 47 47 H 1.08997 * 109.47436 * 60.00321 * 24 22 21 48 48 H 1.07995 * 119.97125 * 179.70756 * 25 21 20 49 49 H 1.07996 * 120.03350 * 180.25012 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1910 1.5504 1.1815 6 1 5.0710 0.9481 1.3521 7 6 3.7539 2.4349 2.1600 8 7 2.9286 3.4077 1.8451 9 14 4.3399 2.2411 3.9231 10 1 5.2567 1.0765 4.0149 11 1 5.0576 3.4710 4.3443 12 1 3.1707 2.0214 4.8120 13 6 4.1784 1.3362 -1.1632 14 8 5.3913 1.3357 -1.1637 15 6 3.4243 1.2179 -2.4627 16 6 4.4182 1.1126 -3.6213 17 8 3.7031 0.9998 -4.8533 18 6 4.4428 0.8970 -5.9887 19 6 3.8136 0.7839 -7.2200 20 6 4.5678 0.6790 -8.3726 21 6 5.9486 0.6862 -8.2999 22 6 6.7688 0.5710 -9.5589 23 6 7.6519 -0.6759 -9.4798 24 6 7.6510 1.8121 -9.7081 25 6 6.5780 0.7931 -7.0734 26 6 5.8284 0.9044 -5.9184 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 2.6238 4.0253 2.5281 35 1 2.7979 2.0991 -2.6007 36 1 2.7974 0.3265 -2.4391 37 1 5.0449 0.2315 -3.4833 38 1 5.0448 2.0042 -3.6446 39 1 2.7352 0.7778 -7.2774 40 1 4.0785 0.5905 -9.3314 41 1 6.1045 0.4914 -10.4193 42 1 7.0235 -1.5601 -9.3735 43 1 8.2449 -0.7595 -10.3906 44 1 8.3162 -0.5967 -8.6194 45 1 8.2446 1.7286 -10.6185 46 1 7.0218 2.7005 -9.7644 47 1 8.3153 1.8913 -8.8476 48 1 7.6566 0.7937 -7.0188 49 1 6.3204 0.9919 -4.9611 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067212288.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:22 Heat of formation + Delta-G solvation = -87.009933 kcal Electronic energy + Delta-G solvation = -26384.032664 eV Core-core repulsion = 22696.028431 eV Total energy + Delta-G solvation = -3688.004232 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.28891 -40.52209 -39.06427 -37.18562 -35.73670 -34.65679 -33.07805 -32.72282 -31.92199 -29.71034 -27.93783 -27.77830 -26.66822 -25.14225 -24.21348 -22.87326 -22.41870 -20.92036 -20.60618 -19.35997 -18.76384 -17.78832 -17.40381 -17.01825 -16.69773 -16.36398 -16.06470 -15.73295 -15.39583 -15.36402 -15.16293 -14.52342 -14.48698 -14.42497 -14.16660 -14.14001 -13.74634 -13.57104 -13.41135 -13.21311 -13.07185 -12.98174 -12.81331 -12.69014 -12.57103 -12.26700 -12.09369 -12.04772 -11.99107 -11.97523 -11.66133 -11.64713 -11.45291 -11.42819 -10.90559 -10.46563 -9.95227 -9.43121 -9.02701 -8.36552 -6.13767 0.39188 0.45604 1.35037 1.39921 1.53344 1.95252 2.00690 2.32297 2.79167 2.97830 3.16138 3.71366 3.80565 3.87382 3.90497 3.95319 4.06122 4.14282 4.19102 4.31817 4.37318 4.37551 4.44372 4.51795 4.58201 4.59899 4.67480 4.72179 4.81785 4.83456 4.84201 4.98746 4.99240 5.03477 5.11524 5.14168 5.15103 5.29315 5.36395 5.39432 5.39706 5.42745 5.45328 5.47500 5.58000 5.74310 5.86722 6.21194 6.40102 6.50249 7.13800 7.40700 8.00412 8.67355 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.020642 B = 0.002383 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.110449 B =11744.654190 C =12627.292367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.133 4.133 3 C 0.108 3.892 4 N -0.450 5.450 5 C -0.342 4.342 6 H 0.062 0.938 7 C 0.005 3.995 8 N -0.890 5.890 9 Si 0.981 3.019 10 H -0.271 1.271 11 H -0.279 1.279 12 H -0.263 1.263 13 C 0.453 3.547 14 O -0.628 6.628 15 C -0.119 4.119 16 C 0.094 3.906 17 O -0.324 6.324 18 C 0.102 3.898 19 C -0.157 4.157 20 C -0.078 4.078 21 C -0.118 4.118 22 C -0.049 4.049 23 C -0.144 4.144 24 C -0.145 4.145 25 C -0.080 4.080 26 C -0.221 4.221 27 H 0.070 0.930 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.274 0.726 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.142 0.858 40 H 0.157 0.843 41 H 0.091 0.909 42 H 0.052 0.948 43 H 0.071 0.929 44 H 0.050 0.950 45 H 0.071 0.929 46 H 0.051 0.949 47 H 0.049 0.951 48 H 0.133 0.867 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.016 -6.003 -20.357 21.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.172 4.172 3 C -0.015 4.015 4 N -0.168 5.168 5 C -0.470 4.470 6 H 0.080 0.920 7 C -0.198 4.198 8 N -0.527 5.527 9 Si 0.805 3.195 10 H -0.195 1.195 11 H -0.205 1.205 12 H -0.187 1.187 13 C 0.242 3.758 14 O -0.515 6.515 15 C -0.159 4.159 16 C 0.018 3.982 17 O -0.238 6.238 18 C 0.058 3.942 19 C -0.176 4.176 20 C -0.096 4.096 21 C -0.118 4.118 22 C -0.067 4.067 23 C -0.202 4.202 24 C -0.202 4.202 25 C -0.098 4.098 26 C -0.240 4.240 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.160 0.840 40 H 0.175 0.825 41 H 0.110 0.890 42 H 0.071 0.929 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.090 0.910 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.151 0.849 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.761 -5.834 -20.201 21.040 hybrid contribution 0.646 0.291 1.543 1.698 sum -0.115 -5.543 -18.658 19.464 Atomic orbital electron populations 1.21635 0.93274 1.02454 1.02206 1.21893 0.97467 0.96448 1.01361 1.21673 0.79939 0.96730 1.03143 1.43703 1.06063 1.62667 1.04385 1.19369 1.12439 1.22463 0.92691 0.91990 1.26173 0.96893 0.92767 1.03990 1.69989 1.33812 1.13614 1.35291 0.85072 0.78590 0.78215 0.77639 1.19491 1.20462 1.18749 1.20860 0.87756 0.81076 0.86094 1.90484 1.16130 1.57075 1.87827 1.21354 0.98679 1.05761 0.90068 1.22176 0.93835 1.01385 0.80775 1.85939 1.36187 1.88212 1.13502 1.19378 0.90449 0.97527 0.86886 1.20684 1.01326 1.06253 0.89333 1.21195 0.93006 0.97222 0.98150 1.20084 0.94146 1.02399 0.95192 1.20099 0.96493 0.96087 0.94025 1.21869 0.99333 0.96652 1.02308 1.21870 0.99336 0.96785 1.02200 1.20939 1.00174 0.97445 0.91274 1.21431 0.93234 1.08978 1.00386 0.91135 0.93091 0.91577 0.92144 0.93425 0.90074 0.91702 0.91665 0.87944 0.87110 0.92212 0.92784 0.84030 0.82533 0.89022 0.92896 0.90991 0.93115 0.90973 0.92971 0.93142 0.84917 0.86486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.91 71.98 0.71 -2.93 16 2 C -0.13 -4.60 6.17 30.59 0.19 -4.41 16 3 C 0.11 4.62 4.69 86.38 0.41 5.02 16 4 N -0.45 -23.13 2.50 -635.53 -1.59 -24.72 16 5 C -0.34 -19.43 8.84 84.04 0.74 -18.69 16 6 H 0.06 3.77 7.82 -2.91 -0.02 3.74 16 7 C 0.00 0.25 4.95 84.93 0.42 0.67 16 8 N -0.89 -48.20 11.61 21.66 0.25 -47.95 16 9 Si 0.98 42.49 29.59 68.60 2.03 44.52 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 12 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 13 C 0.45 22.55 7.59 87.66 0.67 23.22 16 14 O -0.63 -36.11 15.89 -3.05 -0.05 -36.16 16 15 C -0.12 -4.47 4.68 29.85 0.14 -4.33 16 16 C 0.09 3.39 4.03 71.99 0.29 3.68 16 17 O -0.32 -10.67 10.14 -92.44 -0.94 -11.60 16 18 C 0.10 3.05 6.69 22.51 0.15 3.20 16 19 C -0.16 -3.76 9.99 22.37 0.22 -3.53 16 20 C -0.08 -1.49 9.66 22.25 0.22 -1.28 16 21 C -0.12 -2.31 4.78 -19.85 -0.09 -2.41 16 22 C -0.05 -0.68 3.09 -11.54 -0.04 -0.71 16 23 C -0.14 -1.88 9.00 71.98 0.65 -1.23 16 24 C -0.14 -1.92 9.01 71.98 0.65 -1.27 16 25 C -0.08 -1.89 8.70 22.25 0.19 -1.69 16 26 C -0.22 -6.41 9.04 22.37 0.20 -6.20 16 27 H 0.07 1.56 8.14 -2.39 -0.02 1.55 16 28 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.06 1.96 6.60 -2.38 -0.02 1.94 16 31 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.08 3.86 5.76 -2.39 -0.01 3.85 16 33 H 0.06 2.51 6.66 -2.38 -0.02 2.49 16 34 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 35 H 0.10 3.62 7.41 -2.39 -0.02 3.60 16 36 H 0.11 3.65 6.54 -2.38 -0.02 3.63 16 37 H 0.06 2.22 7.62 -2.39 -0.02 2.20 16 38 H 0.05 2.08 7.62 -2.38 -0.02 2.06 16 39 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 40 H 0.16 1.96 7.94 -2.91 -0.02 1.94 16 41 H 0.09 1.01 7.87 -2.39 -0.02 0.99 16 42 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.05 0.72 7.37 -2.39 -0.02 0.71 16 45 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 46 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.05 0.73 7.40 -2.39 -0.02 0.72 16 48 H 0.13 2.69 7.09 -2.91 -0.02 2.67 16 49 H 0.12 3.64 6.30 -2.91 -0.02 3.62 16 Total: -1.00 -68.20 393.38 6.34 -61.86 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: 0.92 Total: 26.97 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: 5.72 Total: -12.91 kcal Atomic # 7 Polarization: -71.33 SS G_CDS: -1.34 Total: -72.67 kcal Atomic # 8 Polarization: -46.78 SS G_CDS: -0.99 Total: -47.77 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -68.20 6.34 -61.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067212288.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.152 kcal (2) G-P(sol) polarization free energy of solvation -68.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds