Wall clock time and date at job start Tue Mar 31 2020 12:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47271 * 2 1 4 4 N 1.46501 * 109.47160 * 120.00162 * 2 1 3 5 5 C 1.46500 * 120.00175 * 121.44470 * 4 2 1 6 6 C 1.50700 * 109.47417 * 269.99967 * 5 4 2 7 7 H 1.07998 * 119.99923 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00238 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99514 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00197 * 180.02562 * 8 6 5 11 11 H 1.48507 * 109.46996 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47230 * 120.00153 * 10 8 6 13 13 H 1.48501 * 109.47055 * 240.00301 * 10 8 6 14 14 C 1.34774 * 120.00011 * 301.44665 * 4 2 1 15 15 O 1.21584 * 120.00281 * 212.19716 * 14 4 2 16 16 C 1.47607 * 119.99999 * 32.19924 * 14 4 2 17 17 C 1.39729 * 120.09185 * 138.50022 * 16 14 4 18 18 C 1.37701 * 119.91331 * 180.29643 * 17 16 14 19 19 C 1.39000 * 120.08632 * 359.44866 * 18 17 16 20 20 O 1.35705 * 119.90865 * 180.25598 * 19 18 17 21 21 C 1.42897 * 117.00566 * 359.23271 * 20 19 18 22 22 C 1.53014 * 109.46700 * 59.95440 * 21 20 19 23 23 C 1.53002 * 109.47467 * 179.97438 * 21 20 19 24 24 C 1.52991 * 109.47388 * 299.95829 * 21 20 19 25 25 C 1.38994 * 120.17576 * 0.54940 * 19 18 17 26 26 C 1.37702 * 120.08794 * 359.72831 * 25 19 18 27 27 H 1.09001 * 109.47545 * 252.73273 * 1 2 3 28 28 H 1.08996 * 109.47236 * 12.73502 * 1 2 3 29 29 H 1.09003 * 109.47320 * 132.73623 * 1 2 3 30 30 H 1.08996 * 109.46955 * 239.99879 * 2 1 3 31 31 H 1.08995 * 109.47421 * 221.50038 * 3 2 1 32 32 H 1.09000 * 109.46978 * 341.50039 * 3 2 1 33 33 H 1.08999 * 109.47011 * 101.49726 * 3 2 1 34 34 H 1.08995 * 109.46928 * 30.00282 * 5 4 2 35 35 H 1.09005 * 109.46983 * 149.99755 * 5 4 2 36 36 H 0.96998 * 119.99543 * 179.97438 * 9 8 6 37 37 H 1.08006 * 120.04057 * 0.02562 * 17 16 14 38 38 H 1.07999 * 119.95420 * 179.69333 * 18 17 16 39 39 H 1.09000 * 109.46859 * 70.43486 * 22 21 20 40 40 H 1.08994 * 109.46884 * 190.44061 * 22 21 20 41 41 H 1.09004 * 109.46680 * 310.43951 * 22 21 20 42 42 H 1.08999 * 109.46907 * 60.00700 * 23 21 20 43 43 H 1.08995 * 109.46819 * 180.02562 * 23 21 20 44 44 H 1.08998 * 109.47111 * 300.00408 * 23 21 20 45 45 H 1.08995 * 109.47418 * 61.87532 * 24 21 20 46 46 H 1.09004 * 109.47044 * 181.87821 * 24 21 20 47 47 H 1.09000 * 109.47141 * 301.87297 * 24 21 20 48 48 H 1.07997 * 119.95484 * 179.70340 * 25 19 18 49 49 H 1.08001 * 120.04753 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8865 -1.8630 1.0620 6 6 2.0414 -3.1090 0.9953 7 1 0.9652 -3.0350 1.0472 8 6 2.6421 -4.3434 0.8669 9 7 3.9526 -4.4335 0.8032 10 14 1.5946 -5.8877 0.7835 11 1 0.1592 -5.5178 0.8752 12 1 1.8440 -6.5862 -0.5030 13 1 1.9476 -6.7868 1.9115 14 6 1.6688 -0.2475 2.4200 15 8 2.4388 -0.3685 3.3532 16 6 0.3513 0.3848 2.6276 17 6 -0.3956 0.0886 3.7708 18 6 -1.6270 0.6759 3.9578 19 6 -2.1222 1.5710 3.0167 20 8 -3.3339 2.1516 3.2071 21 6 -4.0513 1.7839 4.3870 22 6 -3.2226 2.1457 5.6213 23 6 -5.3837 2.5350 4.4287 24 6 -4.3160 0.2771 4.3742 25 6 -1.3824 1.8683 1.8782 26 6 -0.1526 1.2808 1.6811 27 1 -0.3634 -0.3050 0.9813 28 1 -0.3633 1.0023 -0.2265 29 1 -0.3634 -0.6974 -0.7548 30 1 1.8933 -0.5138 -0.8900 31 1 2.8867 1.5285 -0.6809 32 1 1.2423 2.1098 -0.3261 33 1 2.3542 1.7167 1.0070 34 1 3.4771 -1.7753 0.1501 35 1 3.5532 -1.9218 1.9224 36 1 4.3752 -5.3019 0.7133 37 1 -0.0094 -0.6033 4.5047 38 1 -2.2070 0.4437 4.8387 39 1 -3.1903 3.2295 5.7323 40 1 -3.6779 1.7030 6.5071 41 1 -2.2090 1.7622 5.5035 42 1 -5.9739 2.2769 3.5494 43 1 -5.9306 2.2548 5.3289 44 1 -5.1954 3.6086 4.4376 45 1 -3.3668 -0.2586 4.3781 46 1 -4.8922 0.0019 5.2577 47 1 -4.8778 0.0145 3.4778 48 1 -1.7727 2.5606 1.1470 49 1 0.4215 1.5120 0.7961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079545955.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:28 Heat of formation + Delta-G solvation = 52.814076 kcal Electronic energy + Delta-G solvation = -28333.347765 eV Core-core repulsion = 24651.406756 eV Total energy + Delta-G solvation = -3681.941008 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.29208 -40.08419 -37.27670 -36.25703 -34.32449 -33.33737 -31.82755 -30.39199 -30.11461 -27.72828 -27.67219 -27.15445 -26.62707 -23.85717 -23.08945 -22.16492 -21.57355 -20.50209 -18.62409 -17.51588 -16.59446 -16.49276 -16.09928 -15.62746 -15.48233 -15.26488 -14.71298 -14.40371 -14.17566 -13.96893 -13.84777 -13.73247 -13.33966 -13.23065 -12.91861 -12.60250 -12.39012 -12.26707 -12.18754 -12.14753 -12.10869 -11.77148 -11.54733 -11.47938 -11.21826 -11.05087 -10.89072 -10.82307 -10.70275 -10.52452 -10.29504 -10.12303 -9.94827 -9.61993 -9.07279 -8.52304 -8.46021 -7.80524 -7.51705 -6.06186 -4.12345 1.31027 1.55036 3.06893 3.25129 3.27441 3.35254 3.39495 3.85182 4.06523 4.42001 4.44923 4.50599 4.64877 4.87624 4.95876 5.02670 5.07222 5.20880 5.23512 5.25713 5.26658 5.28121 5.37482 5.41976 5.49164 5.51842 5.59384 5.62136 5.73657 5.78970 5.86381 5.88363 5.91295 5.96456 5.98370 6.14148 6.22644 6.31643 6.38507 6.46427 6.56955 6.67546 6.80002 7.13291 7.44407 7.46134 7.62894 7.92753 8.21873 8.44858 8.84135 9.02233 9.53556 11.01029 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015173 B = 0.003752 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.892753 B = 7461.354169 C = 8288.520394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.137 3.863 3 C -0.180 4.180 4 N -0.610 5.610 5 C 0.248 3.752 6 C -0.532 4.532 7 H 0.059 0.941 8 C 0.061 3.939 9 N -0.892 5.892 10 Si 0.896 3.104 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.283 1.283 14 C 0.575 3.425 15 O -0.535 6.535 16 C -0.187 4.187 17 C -0.024 4.024 18 C -0.256 4.256 19 C 0.159 3.841 20 O -0.307 6.307 21 C 0.109 3.891 22 C -0.206 4.206 23 C -0.137 4.137 24 C -0.204 4.204 25 C -0.199 4.199 26 C -0.049 4.049 27 H 0.098 0.902 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.032 0.968 35 H 0.044 0.956 36 H 0.263 0.737 37 H 0.129 0.871 38 H 0.154 0.846 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.088 0.912 46 H 0.070 0.930 47 H 0.067 0.933 48 H 0.129 0.871 49 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.100 14.751 3.109 22.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.032 3.968 3 C -0.238 4.238 4 N -0.342 5.342 5 C 0.129 3.871 6 C -0.571 4.571 7 H 0.078 0.922 8 C -0.141 4.141 9 N -0.531 5.531 10 Si 0.724 3.276 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.209 1.209 14 C 0.363 3.637 15 O -0.413 6.413 16 C -0.191 4.191 17 C -0.043 4.043 18 C -0.274 4.274 19 C 0.114 3.886 20 O -0.221 6.221 21 C 0.071 3.929 22 C -0.262 4.262 23 C -0.194 4.194 24 C -0.260 4.260 25 C -0.217 4.217 26 C -0.066 4.066 27 H 0.116 0.884 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.147 0.853 38 H 0.171 0.829 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.106 0.894 46 H 0.089 0.911 47 H 0.086 0.914 48 H 0.147 0.853 49 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -15.621 14.665 3.467 21.705 hybrid contribution -0.664 -1.257 0.033 1.422 sum -16.285 13.408 3.500 21.383 Atomic orbital electron populations 1.23757 0.96347 1.01393 1.04363 1.20999 0.93430 0.92226 0.90164 1.22711 1.01584 0.96277 1.03183 1.47994 1.51627 1.31353 1.03272 1.19323 0.89255 0.80070 0.98410 1.21578 0.93634 0.91118 1.50722 0.92243 1.24948 0.94983 0.99034 0.95110 1.69952 1.08465 1.24808 1.49901 0.86469 0.80509 0.82981 0.77647 1.19770 1.20903 1.20881 1.17949 0.85251 0.77311 0.83174 1.90699 1.51903 1.55730 1.42926 1.20173 0.97861 1.03527 0.97531 1.20982 0.92395 0.96018 0.94895 1.21772 0.99284 1.03809 1.02547 1.19078 0.84419 0.91232 0.93914 1.86074 1.28523 1.64492 1.43009 1.21765 0.92096 0.95059 0.83946 1.22949 1.02805 1.03120 0.97362 1.21784 0.94131 1.00655 1.02837 1.22932 1.04488 0.95340 1.03263 1.20193 0.96225 1.06785 0.98528 1.22897 0.95386 0.91053 0.97293 0.88389 0.91073 0.92385 0.88531 0.91468 0.91311 0.91641 0.95009 0.93757 0.92735 0.85285 0.82881 0.91580 0.91022 0.89093 0.91550 0.90565 0.91583 0.89353 0.91072 0.91411 0.85276 0.80262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.98 7.71 37.16 0.29 -2.70 16 2 C 0.14 2.27 3.27 -67.93 -0.22 2.05 16 3 C -0.18 -2.39 8.35 37.15 0.31 -2.08 16 4 N -0.61 -13.18 2.38 -168.67 -0.40 -13.58 16 5 C 0.25 6.51 5.32 -5.19 -0.03 6.48 16 6 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 7 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 10 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.57 12.61 5.86 -12.44 -0.07 12.53 16 15 O -0.54 -13.69 16.77 5.29 0.09 -13.60 16 16 C -0.19 -3.34 4.30 -104.96 -0.45 -3.79 16 17 C -0.02 -0.39 9.64 -39.22 -0.38 -0.77 16 18 C -0.26 -3.49 5.96 -39.49 -0.24 -3.73 16 19 C 0.16 2.15 6.15 -39.02 -0.24 1.91 16 20 O -0.31 -3.77 9.78 -18.82 -0.18 -3.95 16 21 C 0.11 1.04 1.11 -90.62 -0.10 0.94 16 22 C -0.21 -1.82 8.09 37.16 0.30 -1.51 16 23 C -0.14 -1.01 8.82 37.16 0.33 -0.68 16 24 C -0.20 -1.87 8.15 37.15 0.30 -1.57 16 25 C -0.20 -2.63 9.69 -39.50 -0.38 -3.02 16 26 C -0.05 -0.72 4.79 -39.22 -0.19 -0.90 16 27 H 0.10 1.66 4.07 -60.88 -0.25 1.42 16 28 H 0.07 0.82 5.14 -51.93 -0.27 0.56 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.10 1.62 7.81 -51.93 -0.41 1.22 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.70 6.31 -51.93 -0.33 0.37 16 33 H 0.06 0.98 6.72 -51.93 -0.35 0.63 16 34 H 0.03 0.84 7.93 -51.93 -0.41 0.43 16 35 H 0.04 1.31 7.36 -51.93 -0.38 0.93 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.13 2.16 8.06 -52.48 -0.42 1.74 16 38 H 0.15 1.75 3.20 -52.49 -0.17 1.58 16 39 H 0.07 0.56 8.11 -51.93 -0.42 0.14 16 40 H 0.07 0.50 8.11 -51.93 -0.42 0.08 16 41 H 0.09 0.93 4.43 -51.93 -0.23 0.70 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.09 0.92 4.44 -51.93 -0.23 0.69 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 49 H 0.18 2.35 1.01 -58.44 -0.06 2.29 16 LS Contribution 368.99 15.07 5.56 5.56 Total: -1.00 -32.82 368.99 -7.68 -40.50 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -7.27 Total: 4.48 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -1.19 Total: -10.39 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.33 Total: -39.18 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.10 Total: -17.56 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.82 -7.68 -40.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079545955.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.311 kcal (2) G-P(sol) polarization free energy of solvation -32.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds