Wall clock time and date at job start Tue Mar 31 2020 12:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47271 * 2 1 4 4 N 1.46501 * 109.47160 * 120.00162 * 2 1 3 5 5 C 1.46500 * 120.00175 * 121.44470 * 4 2 1 6 6 C 1.50700 * 109.47417 * 269.99967 * 5 4 2 7 7 H 1.07998 * 119.99923 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00238 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99514 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00197 * 180.02562 * 8 6 5 11 11 H 1.48507 * 109.46996 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47230 * 120.00153 * 10 8 6 13 13 H 1.48501 * 109.47055 * 240.00301 * 10 8 6 14 14 C 1.34774 * 120.00011 * 301.44665 * 4 2 1 15 15 O 1.21584 * 120.00281 * 212.19716 * 14 4 2 16 16 C 1.47607 * 119.99999 * 32.19924 * 14 4 2 17 17 C 1.39729 * 120.09185 * 138.50022 * 16 14 4 18 18 C 1.37701 * 119.91331 * 180.29643 * 17 16 14 19 19 C 1.39000 * 120.08632 * 359.44866 * 18 17 16 20 20 O 1.35705 * 119.90865 * 180.25598 * 19 18 17 21 21 C 1.42897 * 117.00566 * 359.23271 * 20 19 18 22 22 C 1.53014 * 109.46700 * 59.95440 * 21 20 19 23 23 C 1.53002 * 109.47467 * 179.97438 * 21 20 19 24 24 C 1.52991 * 109.47388 * 299.95829 * 21 20 19 25 25 C 1.38994 * 120.17576 * 0.54940 * 19 18 17 26 26 C 1.37702 * 120.08794 * 359.72831 * 25 19 18 27 27 H 1.09001 * 109.47545 * 252.73273 * 1 2 3 28 28 H 1.08996 * 109.47236 * 12.73502 * 1 2 3 29 29 H 1.09003 * 109.47320 * 132.73623 * 1 2 3 30 30 H 1.08996 * 109.46955 * 239.99879 * 2 1 3 31 31 H 1.08995 * 109.47421 * 221.50038 * 3 2 1 32 32 H 1.09000 * 109.46978 * 341.50039 * 3 2 1 33 33 H 1.08999 * 109.47011 * 101.49726 * 3 2 1 34 34 H 1.08995 * 109.46928 * 30.00282 * 5 4 2 35 35 H 1.09005 * 109.46983 * 149.99755 * 5 4 2 36 36 H 0.96998 * 119.99543 * 179.97438 * 9 8 6 37 37 H 1.08006 * 120.04057 * 0.02562 * 17 16 14 38 38 H 1.07999 * 119.95420 * 179.69333 * 18 17 16 39 39 H 1.09000 * 109.46859 * 70.43486 * 22 21 20 40 40 H 1.08994 * 109.46884 * 190.44061 * 22 21 20 41 41 H 1.09004 * 109.46680 * 310.43951 * 22 21 20 42 42 H 1.08999 * 109.46907 * 60.00700 * 23 21 20 43 43 H 1.08995 * 109.46819 * 180.02562 * 23 21 20 44 44 H 1.08998 * 109.47111 * 300.00408 * 23 21 20 45 45 H 1.08995 * 109.47418 * 61.87532 * 24 21 20 46 46 H 1.09004 * 109.47044 * 181.87821 * 24 21 20 47 47 H 1.09000 * 109.47141 * 301.87297 * 24 21 20 48 48 H 1.07997 * 119.95484 * 179.70340 * 25 19 18 49 49 H 1.08001 * 120.04753 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8865 -1.8630 1.0620 6 6 2.0414 -3.1090 0.9953 7 1 0.9652 -3.0350 1.0472 8 6 2.6421 -4.3434 0.8669 9 7 3.9526 -4.4335 0.8032 10 14 1.5946 -5.8877 0.7835 11 1 0.1592 -5.5178 0.8752 12 1 1.8440 -6.5862 -0.5030 13 1 1.9476 -6.7868 1.9115 14 6 1.6688 -0.2475 2.4200 15 8 2.4388 -0.3685 3.3532 16 6 0.3513 0.3848 2.6276 17 6 -0.3956 0.0886 3.7708 18 6 -1.6270 0.6759 3.9578 19 6 -2.1222 1.5710 3.0167 20 8 -3.3339 2.1516 3.2071 21 6 -4.0513 1.7839 4.3870 22 6 -3.2226 2.1457 5.6213 23 6 -5.3837 2.5350 4.4287 24 6 -4.3160 0.2771 4.3742 25 6 -1.3824 1.8683 1.8782 26 6 -0.1526 1.2808 1.6811 27 1 -0.3634 -0.3050 0.9813 28 1 -0.3633 1.0023 -0.2265 29 1 -0.3634 -0.6974 -0.7548 30 1 1.8933 -0.5138 -0.8900 31 1 2.8867 1.5285 -0.6809 32 1 1.2423 2.1098 -0.3261 33 1 2.3542 1.7167 1.0070 34 1 3.4771 -1.7753 0.1501 35 1 3.5532 -1.9218 1.9224 36 1 4.3752 -5.3019 0.7133 37 1 -0.0094 -0.6033 4.5047 38 1 -2.2070 0.4437 4.8387 39 1 -3.1903 3.2295 5.7323 40 1 -3.6779 1.7030 6.5071 41 1 -2.2090 1.7622 5.5035 42 1 -5.9739 2.2769 3.5494 43 1 -5.9306 2.2548 5.3289 44 1 -5.1954 3.6086 4.4376 45 1 -3.3668 -0.2586 4.3781 46 1 -4.8922 0.0019 5.2577 47 1 -4.8778 0.0145 3.4778 48 1 -1.7727 2.5606 1.1470 49 1 0.4215 1.5120 0.7961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079545955.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:27 Heat of formation + Delta-G solvation = 33.372871 kcal Electronic energy + Delta-G solvation = -28334.190799 eV Core-core repulsion = 24651.406756 eV Total energy + Delta-G solvation = -3682.784042 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.50090 -41.24394 -38.72277 -37.69518 -35.37678 -35.09353 -33.53880 -31.62206 -31.34746 -29.10053 -28.46065 -28.36487 -27.78373 -25.53591 -24.27743 -23.79720 -22.85153 -21.44989 -20.00226 -18.67492 -18.53058 -17.85989 -17.60149 -16.82631 -16.64131 -16.37911 -16.31541 -16.01895 -15.37584 -15.15201 -15.02363 -14.79996 -14.59584 -14.43259 -14.09729 -13.87709 -13.67370 -13.46469 -13.32178 -13.19499 -13.11109 -12.93020 -12.81680 -12.78863 -12.66348 -12.59251 -12.32027 -12.17041 -12.05403 -11.82440 -11.66908 -11.56545 -11.30141 -11.05335 -10.78628 -10.67096 -9.63344 -9.38532 -8.90657 -8.23492 -6.40489 0.07595 0.42201 1.35402 1.36871 1.49225 1.68819 2.18866 2.27205 2.41254 2.77872 3.04742 3.66551 3.70843 3.79749 3.82730 3.85325 3.89980 3.98086 4.10058 4.19688 4.26660 4.42264 4.57337 4.59453 4.62362 4.66410 4.67804 4.75488 4.84674 4.85361 4.89214 4.90709 4.99295 5.01684 5.02887 5.14899 5.16795 5.18598 5.22834 5.26344 5.28587 5.39692 5.41329 5.50482 5.58934 5.69032 5.90723 6.05146 6.47169 6.68339 6.76814 7.19019 7.35434 8.82838 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015173 B = 0.003752 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.892753 B = 7461.354169 C = 8288.520394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.125 3.875 3 C -0.174 4.174 4 N -0.615 5.615 5 C 0.264 3.736 6 C -0.545 4.545 7 H 0.056 0.944 8 C 0.009 3.991 9 N -0.927 5.927 10 Si 0.969 3.031 11 H -0.266 1.266 12 H -0.269 1.269 13 H -0.280 1.280 14 C 0.568 3.432 15 O -0.592 6.592 16 C -0.214 4.214 17 C -0.042 4.042 18 C -0.246 4.246 19 C 0.166 3.834 20 O -0.310 6.310 21 C 0.099 3.901 22 C -0.205 4.205 23 C -0.134 4.134 24 C -0.203 4.203 25 C -0.194 4.194 26 C -0.038 4.038 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.114 0.886 33 H 0.045 0.955 34 H 0.022 0.978 35 H -0.005 1.005 36 H 0.268 0.732 37 H 0.111 0.889 38 H 0.175 0.825 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.097 0.903 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.093 0.907 47 H 0.064 0.936 48 H 0.163 0.837 49 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.893 16.203 2.231 25.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.022 3.978 3 C -0.231 4.231 4 N -0.347 5.347 5 C 0.143 3.857 6 C -0.583 4.583 7 H 0.075 0.925 8 C -0.191 4.191 9 N -0.567 5.567 10 Si 0.793 3.207 11 H -0.190 1.190 12 H -0.194 1.194 13 H -0.206 1.206 14 C 0.360 3.640 15 O -0.473 6.473 16 C -0.217 4.217 17 C -0.061 4.061 18 C -0.264 4.264 19 C 0.119 3.881 20 O -0.224 6.224 21 C 0.062 3.938 22 C -0.262 4.262 23 C -0.191 4.191 24 C -0.260 4.260 25 C -0.212 4.212 26 C -0.055 4.055 27 H 0.096 0.904 28 H 0.132 0.868 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.132 0.868 33 H 0.064 0.936 34 H 0.040 0.960 35 H 0.014 0.986 36 H 0.077 0.923 37 H 0.129 0.871 38 H 0.191 0.809 39 H 0.088 0.912 40 H 0.110 0.890 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.116 0.884 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.112 0.888 47 H 0.083 0.917 48 H 0.180 0.820 49 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -19.449 16.152 2.557 25.411 hybrid contribution 0.453 -1.644 0.363 1.743 sum -18.996 14.508 2.920 24.080 Atomic orbital electron populations 1.23717 0.94379 1.03952 1.03315 1.21380 0.95157 0.93631 0.87652 1.22668 1.03529 0.94446 1.02506 1.47989 1.51102 1.30364 1.05231 1.18794 0.89259 0.82089 0.95564 1.21783 0.93527 0.92090 1.50950 0.92540 1.25885 0.96274 1.02510 0.94396 1.70076 1.10250 1.25924 1.50437 0.85350 0.78814 0.78461 0.78100 1.19017 1.19400 1.20624 1.18678 0.86371 0.76655 0.82319 1.90645 1.53785 1.58432 1.44472 1.19880 0.96158 1.05921 0.99791 1.20970 0.93792 0.96823 0.94528 1.21948 0.97986 1.03073 1.03386 1.19237 0.84876 0.90326 0.93636 1.86093 1.27706 1.64173 1.44380 1.22109 0.92886 0.95611 0.83155 1.22938 1.01774 1.03508 0.97972 1.21820 0.92836 1.00494 1.03965 1.22927 1.03880 0.94938 1.04269 1.20523 0.95263 1.06448 0.98990 1.22953 0.95925 0.89892 0.96710 0.90370 0.86812 0.92233 0.89187 0.90424 0.86831 0.93578 0.96040 0.98640 0.92336 0.87106 0.80864 0.91176 0.88983 0.90851 0.91506 0.88436 0.91351 0.90972 0.88835 0.91717 0.81973 0.78823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.45 7.71 71.98 0.55 -4.90 16 2 C 0.13 4.13 3.27 44.99 0.15 4.28 16 3 C -0.17 -4.35 8.35 71.98 0.60 -3.75 16 4 N -0.61 -27.99 2.38 -805.82 -1.92 -29.91 16 5 C 0.26 14.80 5.32 85.63 0.46 15.26 16 6 C -0.54 -31.74 9.39 25.60 0.24 -31.50 16 7 H 0.06 3.25 7.81 -2.91 -0.02 3.23 16 8 C 0.01 0.49 5.46 84.65 0.46 0.96 16 9 N -0.93 -56.58 13.29 21.45 0.28 -56.30 16 10 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 12 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 13 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 14 C 0.57 26.53 5.86 86.72 0.51 27.04 16 15 O -0.59 -32.96 16.77 -3.98 -0.07 -33.03 16 16 C -0.21 -7.83 4.30 -20.08 -0.09 -7.91 16 17 C -0.04 -1.43 9.64 22.50 0.22 -1.22 16 18 C -0.25 -6.52 5.96 22.33 0.13 -6.38 16 19 C 0.17 4.07 6.15 22.63 0.14 4.20 16 20 O -0.31 -6.62 9.78 -90.26 -0.88 -7.51 16 21 C 0.10 1.59 1.11 -10.79 -0.01 1.58 16 22 C -0.21 -3.08 8.09 71.99 0.58 -2.50 16 23 C -0.13 -1.49 8.82 71.98 0.64 -0.86 16 24 C -0.20 -3.20 8.15 71.98 0.59 -2.62 16 25 C -0.19 -4.49 9.69 22.32 0.22 -4.28 16 26 C -0.04 -1.04 4.79 22.51 0.11 -0.93 16 27 H 0.08 2.58 4.07 -10.79 -0.04 2.54 16 28 H 0.11 2.14 5.14 -2.39 -0.01 2.13 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.09 3.05 7.81 -2.39 -0.02 3.03 16 31 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.11 1.81 6.31 -2.39 -0.02 1.79 16 33 H 0.05 1.36 6.72 -2.39 -0.02 1.34 16 34 H 0.02 1.22 7.93 -2.39 -0.02 1.20 16 35 H 0.00 -0.29 7.36 -2.38 -0.02 -0.31 16 36 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.11 4.06 8.06 -2.91 -0.02 4.03 16 38 H 0.17 3.78 3.20 -2.91 -0.01 3.77 16 39 H 0.07 1.00 8.11 -2.39 -0.02 0.98 16 40 H 0.09 1.00 8.11 -2.39 -0.02 0.98 16 41 H 0.07 1.38 4.43 -2.38 -0.01 1.37 16 42 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 45 H 0.07 1.38 4.44 -2.39 -0.01 1.37 16 46 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.16 2.73 8.06 -2.91 -0.02 2.70 16 49 H 0.20 4.54 1.01 -8.51 -0.01 4.53 16 Total: -1.00 -76.94 368.99 5.86 -71.08 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 0.92 Total: 22.22 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: 5.49 Total: -13.53 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -1.63 Total: -86.21 kcal Atomic # 8 Polarization: -39.58 SS G_CDS: -0.95 Total: -40.53 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -76.94 5.86 -71.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079545955.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.456 kcal (2) G-P(sol) polarization free energy of solvation -76.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds