Wall clock time and date at job start Tue Mar 31 2020 13:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.46885 * 2 1 4 4 O 1.42900 * 109.46991 * 179.97438 * 3 2 1 5 5 C 1.35897 * 117.00165 * 179.97438 * 4 3 2 6 6 C 1.38733 * 120.06155 * 180.02562 * 5 4 3 7 7 C 1.38136 * 119.94920 * 180.02562 * 6 5 4 8 8 C 1.38275 * 120.05297 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.94176 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47086 * 90.00083 * 9 8 7 11 11 C 1.50701 * 109.47086 * 180.02562 * 10 9 8 12 12 O 1.21280 * 120.00129 * 359.97438 * 11 10 9 13 13 N 1.34783 * 120.00086 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99688 * 0.02562 * 13 11 10 15 15 C 1.46494 * 120.00055 * 179.97438 * 13 11 10 16 16 H 1.08999 * 109.47245 * 0.02562 * 15 13 11 17 17 C 1.53002 * 109.47253 * 240.00340 * 15 13 11 18 18 C 1.50702 * 109.47281 * 120.00007 * 15 13 11 19 19 H 1.08002 * 119.99340 * 35.00479 * 18 15 13 20 20 C 1.37870 * 120.00290 * 215.00802 * 18 15 13 21 21 N 1.31511 * 119.99900 * 184.91483 * 20 18 15 22 22 Si 1.86799 * 120.00193 * 4.91177 * 20 18 15 23 23 H 1.48503 * 109.47144 * 84.83490 * 22 20 18 24 24 H 1.48492 * 109.47329 * 204.83811 * 22 20 18 25 25 H 1.48504 * 109.46907 * 324.83769 * 22 20 18 26 26 C 1.38265 * 120.11137 * 0.25228 * 8 7 6 27 27 C 1.38147 * 120.05347 * 359.45512 * 26 8 7 28 28 H 1.09004 * 109.47036 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47521 * 300.00010 * 1 2 3 30 30 H 1.09004 * 109.47058 * 60.00392 * 1 2 3 31 31 H 1.08997 * 109.47677 * 240.00501 * 2 1 3 32 32 H 1.08997 * 109.47393 * 119.99425 * 2 1 3 33 33 H 1.08998 * 109.47204 * 60.00187 * 3 2 1 34 34 H 1.09004 * 109.46953 * 299.99673 * 3 2 1 35 35 H 1.08000 * 120.02321 * 0.02562 * 6 5 4 36 36 H 1.07998 * 119.97617 * 180.02562 * 7 6 5 37 37 H 1.08997 * 109.46875 * 209.99928 * 9 8 7 38 38 H 1.09003 * 109.47108 * 330.00283 * 9 8 7 39 39 H 1.08997 * 109.47395 * 300.00170 * 10 9 8 40 40 H 1.08999 * 109.47225 * 59.99669 * 10 9 8 41 41 H 1.09001 * 109.46754 * 90.00307 * 14 13 11 42 42 H 1.08998 * 109.46356 * 209.99878 * 14 13 11 43 43 H 1.08993 * 109.46890 * 329.99733 * 14 13 11 44 44 H 1.08993 * 109.47536 * 54.97744 * 17 15 13 45 45 H 1.09007 * 109.46849 * 174.97894 * 17 15 13 46 46 H 1.08999 * 109.46578 * 294.97291 * 17 15 13 47 47 H 0.97003 * 119.99865 * 179.97438 * 21 20 18 48 48 H 1.08003 * 119.96927 * 179.70335 * 26 8 7 49 49 H 1.08001 * 120.02394 * 180.25032 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4689 1.4426 0.0006 5 6 4.0859 2.6535 0.0001 6 6 5.4713 2.7276 0.0001 7 6 6.0960 3.9596 0.0002 8 6 5.3417 5.1185 0.0008 9 6 6.0258 6.4612 0.0015 10 6 6.2573 6.9164 -1.4408 11 6 6.9420 8.2588 -1.4401 12 8 7.2173 8.7987 -0.3896 13 7 7.2476 8.8601 -2.6071 14 6 6.9135 8.2088 -3.8761 15 6 7.9127 10.1653 -2.6064 16 1 8.0784 10.4882 -1.5786 17 6 7.0309 11.1875 -3.3266 18 6 9.2368 10.0548 -3.3174 19 1 9.3411 9.3934 -4.1648 20 6 10.3151 10.7979 -2.8861 21 7 11.4422 10.7756 -3.5634 22 14 10.1751 11.8365 -1.3398 23 1 10.4570 10.9936 -0.1501 24 1 11.1554 12.9501 -1.4010 25 1 8.8013 12.3914 -1.2389 26 6 3.9609 5.0474 0.0066 27 6 3.3314 3.8177 0.0004 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 6.0608 1.8227 0.0001 36 1 7.1744 4.0178 -0.0002 37 1 5.3978 7.1887 0.5157 38 1 6.9838 6.3807 0.5152 39 1 6.8853 6.1889 -1.9550 40 1 5.2994 6.9969 -1.9546 41 1 5.9154 8.5146 -4.1897 42 1 7.6384 8.5005 -4.6360 43 1 6.9382 7.1268 -3.7467 44 1 6.0427 11.2027 -2.8670 45 1 7.4831 12.1763 -3.2488 46 1 6.9388 10.9117 -4.3771 47 1 12.2007 11.2987 -3.2601 48 1 3.3740 5.9540 0.0119 49 1 2.2528 3.7627 0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080027884.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:53 Heat of formation + Delta-G solvation = -69.340170 kcal Electronic energy + Delta-G solvation = -26030.861395 eV Core-core repulsion = 22343.623381 eV Total energy + Delta-G solvation = -3687.238014 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.38770 -39.24108 -38.01052 -35.48207 -34.50290 -33.28157 -32.56615 -31.16778 -30.53035 -28.81331 -26.95325 -26.14456 -25.26497 -24.26311 -23.26962 -21.71866 -21.24124 -20.37200 -18.39711 -18.18943 -17.25615 -16.63589 -16.36410 -16.28780 -15.50636 -15.18031 -15.07821 -14.54017 -14.43216 -14.23878 -14.01556 -13.62380 -13.23787 -13.12493 -12.84537 -12.70707 -12.57661 -12.46910 -12.36576 -12.15240 -12.04541 -11.76115 -11.60939 -11.46812 -11.38301 -11.22478 -11.05025 -11.02747 -10.84432 -10.73653 -10.67805 -10.41142 -9.77590 -9.28340 -9.13077 -8.98469 -8.59923 -8.17811 -7.64139 -6.16319 -4.18406 1.21345 1.29164 2.89266 3.32009 3.36163 3.39688 3.46760 3.59619 3.93274 4.39446 4.39881 4.41147 4.67613 4.71004 4.74235 4.81183 4.94305 4.94975 5.12785 5.20270 5.21784 5.25351 5.28242 5.39536 5.45291 5.47522 5.54624 5.57835 5.67091 5.73054 5.83629 5.88429 5.98218 6.07441 6.15258 6.23629 6.29527 6.31592 6.37422 6.41504 6.60086 6.62904 6.65989 6.94550 7.09604 7.22105 7.50056 7.66070 8.16961 8.52457 8.84743 8.98786 9.46543 10.95522 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.028828 B = 0.002089 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.044550 B =13402.142153 C =13560.721898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.059 3.941 4 O -0.319 6.319 5 C 0.120 3.880 6 C -0.150 4.150 7 C -0.076 4.076 8 C -0.111 4.111 9 C -0.062 4.062 10 C -0.132 4.132 11 C 0.502 3.498 12 O -0.560 6.560 13 N -0.590 5.590 14 C 0.083 3.917 15 C 0.221 3.779 16 H 0.064 0.936 17 C -0.146 4.146 18 C -0.525 4.525 19 H 0.078 0.922 20 C 0.079 3.921 21 N -0.892 5.892 22 Si 0.876 3.124 23 H -0.271 1.271 24 H -0.288 1.288 25 H -0.264 1.264 26 C -0.077 4.077 27 C -0.207 4.207 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.042 0.958 42 H 0.081 0.919 43 H 0.057 0.943 44 H 0.025 0.975 45 H 0.054 0.946 46 H 0.049 0.951 47 H 0.266 0.734 48 H 0.125 0.875 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.463 -18.816 5.212 28.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.017 4.017 4 O -0.233 6.233 5 C 0.075 3.925 6 C -0.168 4.168 7 C -0.094 4.094 8 C -0.111 4.111 9 C -0.100 4.100 10 C -0.172 4.172 11 C 0.290 3.710 12 O -0.439 6.439 13 N -0.321 5.321 14 C -0.061 4.061 15 C 0.120 3.880 16 H 0.082 0.918 17 C -0.205 4.205 18 C -0.563 4.563 19 H 0.096 0.904 20 C -0.125 4.125 21 N -0.529 5.529 22 Si 0.703 3.297 23 H -0.196 1.196 24 H -0.214 1.214 25 H -0.189 1.189 26 C -0.095 4.095 27 C -0.226 4.226 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.108 0.892 40 H 0.104 0.896 41 H 0.061 0.939 42 H 0.099 0.901 43 H 0.076 0.924 44 H 0.044 0.956 45 H 0.073 0.927 46 H 0.068 0.932 47 H 0.076 0.924 48 H 0.143 0.857 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -20.037 -18.631 5.721 27.952 hybrid contribution -0.125 0.657 0.541 0.860 sum -20.162 -17.973 6.261 27.726 Atomic orbital electron populations 1.21694 0.94246 1.02553 1.02262 1.21485 0.96037 0.94898 1.03719 1.22855 0.78671 0.98718 1.01413 1.86032 1.21123 1.27247 1.88884 1.18972 0.92312 0.83941 0.97292 1.20418 0.91278 0.98654 1.06468 1.20954 1.00130 0.90904 0.97394 1.19931 0.93500 0.95497 1.02187 1.20294 1.01353 0.92271 0.96051 1.21667 1.01558 0.95720 0.98249 1.20528 0.79441 0.86975 0.84080 1.90630 1.55531 1.66577 1.31198 1.48325 1.57475 1.21486 1.04829 1.21626 1.00081 0.96629 0.87780 1.19300 0.91445 0.78946 0.98264 0.91810 1.22207 0.97685 1.00150 1.00417 1.21123 0.92778 1.26671 1.15739 0.90423 1.24960 0.94917 0.96047 0.96563 1.69891 1.02906 1.41080 1.39028 0.86877 0.78234 0.80296 0.84321 1.19626 1.21433 1.18870 1.20880 0.94085 0.96987 0.97560 1.21194 0.99778 0.92401 1.09209 0.91709 0.92352 0.92319 0.90807 0.90852 0.92121 0.92054 0.85341 0.85104 0.90424 0.90167 0.89202 0.89583 0.93940 0.90076 0.92413 0.95577 0.92697 0.93209 0.92409 0.85739 0.85777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.91 37.16 0.37 -0.26 16 2 C -0.12 -0.71 6.30 -26.73 -0.17 -0.88 16 3 C 0.06 0.43 4.74 37.16 0.18 0.60 16 4 O -0.32 -3.33 10.14 -19.42 -0.20 -3.52 16 5 C 0.12 1.33 6.69 -39.22 -0.26 1.06 16 6 C -0.15 -1.65 9.99 -39.44 -0.39 -2.04 16 7 C -0.08 -0.85 9.69 -39.60 -0.38 -1.24 16 8 C -0.11 -1.31 5.14 -104.60 -0.54 -1.85 16 9 C -0.06 -0.84 4.63 -27.88 -0.13 -0.97 16 10 C -0.13 -1.89 4.23 -27.88 -0.12 -2.01 16 11 C 0.50 10.03 7.67 -10.98 -0.08 9.95 16 12 O -0.56 -13.32 15.31 5.56 0.09 -13.23 16 13 N -0.59 -12.22 2.75 -175.26 -0.48 -12.70 16 14 C 0.08 1.35 9.39 59.85 0.56 1.91 16 15 C 0.22 5.35 2.30 -69.08 -0.16 5.19 16 16 H 0.06 1.70 4.05 -51.93 -0.21 1.49 16 17 C -0.15 -3.09 9.10 37.16 0.34 -2.76 16 18 C -0.53 -14.44 8.72 -34.44 -0.30 -14.74 16 19 H 0.08 2.25 6.82 -52.49 -0.36 1.89 16 20 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 21 N -0.89 -26.83 13.96 55.43 0.77 -26.06 16 22 Si 0.88 22.35 26.99 -169.99 -4.59 17.76 16 23 H -0.27 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 25 H -0.26 -6.52 6.82 56.52 0.39 -6.14 16 26 C -0.08 -0.83 9.69 -39.60 -0.38 -1.22 16 27 C -0.21 -2.12 9.04 -39.43 -0.36 -2.47 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 34 H 0.06 0.40 7.66 -51.93 -0.40 0.01 16 35 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 37 H 0.08 1.08 8.04 -51.93 -0.42 0.66 16 38 H 0.08 1.17 8.04 -51.93 -0.42 0.75 16 39 H 0.09 1.19 7.40 -51.93 -0.38 0.81 16 40 H 0.09 1.06 8.11 -51.93 -0.42 0.64 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 1.45 6.56 -51.93 -0.34 1.10 16 43 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.05 0.98 7.84 -51.93 -0.41 0.58 16 47 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 48 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 49 H 0.12 1.00 6.30 -52.49 -0.33 0.67 16 LS Contribution 395.44 15.07 5.96 5.96 Total: -1.00 -33.17 395.44 -8.60 -41.77 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -8.22 Total: -0.43 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -1.93 Total: -9.55 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.29 Total: -38.76 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.11 Total: -16.75 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.59 Total: 17.76 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.17 -8.60 -41.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080027884.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.570 kcal (2) G-P(sol) polarization free energy of solvation -33.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds