Wall clock time and date at job start Tue Mar 31 2020 13:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.46885 * 2 1 4 4 O 1.42900 * 109.46991 * 179.97438 * 3 2 1 5 5 C 1.35897 * 117.00165 * 179.97438 * 4 3 2 6 6 C 1.38733 * 120.06155 * 180.02562 * 5 4 3 7 7 C 1.38136 * 119.94920 * 180.02562 * 6 5 4 8 8 C 1.38275 * 120.05297 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.94176 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47086 * 90.00083 * 9 8 7 11 11 C 1.50701 * 109.47086 * 180.02562 * 10 9 8 12 12 O 1.21280 * 120.00129 * 359.97438 * 11 10 9 13 13 N 1.34783 * 120.00086 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99688 * 0.02562 * 13 11 10 15 15 C 1.46494 * 120.00055 * 179.97438 * 13 11 10 16 16 H 1.08999 * 109.47245 * 0.02562 * 15 13 11 17 17 C 1.53002 * 109.47253 * 240.00340 * 15 13 11 18 18 C 1.50702 * 109.47281 * 120.00007 * 15 13 11 19 19 H 1.08002 * 119.99340 * 35.00479 * 18 15 13 20 20 C 1.37870 * 120.00290 * 215.00802 * 18 15 13 21 21 N 1.31511 * 119.99900 * 184.91483 * 20 18 15 22 22 Si 1.86799 * 120.00193 * 4.91177 * 20 18 15 23 23 H 1.48503 * 109.47144 * 84.83490 * 22 20 18 24 24 H 1.48492 * 109.47329 * 204.83811 * 22 20 18 25 25 H 1.48504 * 109.46907 * 324.83769 * 22 20 18 26 26 C 1.38265 * 120.11137 * 0.25228 * 8 7 6 27 27 C 1.38147 * 120.05347 * 359.45512 * 26 8 7 28 28 H 1.09004 * 109.47036 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47521 * 300.00010 * 1 2 3 30 30 H 1.09004 * 109.47058 * 60.00392 * 1 2 3 31 31 H 1.08997 * 109.47677 * 240.00501 * 2 1 3 32 32 H 1.08997 * 109.47393 * 119.99425 * 2 1 3 33 33 H 1.08998 * 109.47204 * 60.00187 * 3 2 1 34 34 H 1.09004 * 109.46953 * 299.99673 * 3 2 1 35 35 H 1.08000 * 120.02321 * 0.02562 * 6 5 4 36 36 H 1.07998 * 119.97617 * 180.02562 * 7 6 5 37 37 H 1.08997 * 109.46875 * 209.99928 * 9 8 7 38 38 H 1.09003 * 109.47108 * 330.00283 * 9 8 7 39 39 H 1.08997 * 109.47395 * 300.00170 * 10 9 8 40 40 H 1.08999 * 109.47225 * 59.99669 * 10 9 8 41 41 H 1.09001 * 109.46754 * 90.00307 * 14 13 11 42 42 H 1.08998 * 109.46356 * 209.99878 * 14 13 11 43 43 H 1.08993 * 109.46890 * 329.99733 * 14 13 11 44 44 H 1.08993 * 109.47536 * 54.97744 * 17 15 13 45 45 H 1.09007 * 109.46849 * 174.97894 * 17 15 13 46 46 H 1.08999 * 109.46578 * 294.97291 * 17 15 13 47 47 H 0.97003 * 119.99865 * 179.97438 * 21 20 18 48 48 H 1.08003 * 119.96927 * 179.70335 * 26 8 7 49 49 H 1.08001 * 120.02394 * 180.25032 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4689 1.4426 0.0006 5 6 4.0859 2.6535 0.0001 6 6 5.4713 2.7276 0.0001 7 6 6.0960 3.9596 0.0002 8 6 5.3417 5.1185 0.0008 9 6 6.0258 6.4612 0.0015 10 6 6.2573 6.9164 -1.4408 11 6 6.9420 8.2588 -1.4401 12 8 7.2173 8.7987 -0.3896 13 7 7.2476 8.8601 -2.6071 14 6 6.9135 8.2088 -3.8761 15 6 7.9127 10.1653 -2.6064 16 1 8.0784 10.4882 -1.5786 17 6 7.0309 11.1875 -3.3266 18 6 9.2368 10.0548 -3.3174 19 1 9.3411 9.3934 -4.1648 20 6 10.3151 10.7979 -2.8861 21 7 11.4422 10.7756 -3.5634 22 14 10.1751 11.8365 -1.3398 23 1 10.4570 10.9936 -0.1501 24 1 11.1554 12.9501 -1.4010 25 1 8.8013 12.3914 -1.2389 26 6 3.9609 5.0474 0.0066 27 6 3.3314 3.8177 0.0004 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 6.0608 1.8227 0.0001 36 1 7.1744 4.0178 -0.0002 37 1 5.3978 7.1887 0.5157 38 1 6.9838 6.3807 0.5152 39 1 6.8853 6.1889 -1.9550 40 1 5.2994 6.9969 -1.9546 41 1 5.9154 8.5146 -4.1897 42 1 7.6384 8.5005 -4.6360 43 1 6.9382 7.1268 -3.7467 44 1 6.0427 11.2027 -2.8670 45 1 7.4831 12.1763 -3.2488 46 1 6.9388 10.9117 -4.3771 47 1 12.2007 11.2987 -3.2601 48 1 3.3740 5.9540 0.0119 49 1 2.2528 3.7627 0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080027884.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:52 Heat of formation + Delta-G solvation = -87.739439 kcal Electronic energy + Delta-G solvation = -26031.659248 eV Core-core repulsion = 22343.623381 eV Total energy + Delta-G solvation = -3688.035866 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.20679 -40.72963 -38.84831 -37.18188 -35.14888 -34.72853 -34.10334 -32.23688 -31.95442 -29.83589 -27.63116 -27.48669 -27.25734 -25.39327 -23.95562 -22.72780 -22.16661 -21.57256 -19.77665 -19.23932 -19.12504 -17.86985 -17.24091 -17.20593 -17.11867 -16.50976 -16.12860 -15.89881 -15.29121 -15.08330 -14.91130 -14.78926 -14.54949 -14.40291 -14.18070 -14.17295 -13.67463 -13.59053 -13.39920 -13.28689 -13.07375 -12.98849 -12.94004 -12.76638 -12.65651 -12.32315 -12.23868 -12.16143 -12.05756 -11.93020 -11.80567 -11.56756 -11.46392 -11.27448 -10.79324 -10.60171 -9.93440 -9.30694 -9.01891 -8.37321 -6.40759 0.40913 0.44868 1.26633 1.33008 1.41159 1.82681 2.24067 2.27042 2.35907 2.80946 3.05212 3.67488 3.81908 3.95799 3.96139 4.00724 4.11195 4.20451 4.27840 4.30241 4.38754 4.45733 4.48598 4.52357 4.55904 4.58205 4.68570 4.73983 4.74880 4.77165 4.83786 4.85020 4.96150 5.04391 5.12533 5.15671 5.16415 5.18529 5.22806 5.32639 5.35527 5.38038 5.42223 5.54704 5.75104 5.84303 5.86236 6.16830 6.48639 6.64732 6.81122 7.24626 7.43420 8.77896 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.028828 B = 0.002089 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.044550 B =13402.142153 C =13560.721898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C 0.052 3.948 4 O -0.333 6.333 5 C 0.113 3.887 6 C -0.161 4.161 7 C -0.081 4.081 8 C -0.120 4.120 9 C -0.054 4.054 10 C -0.117 4.117 11 C 0.493 3.507 12 O -0.605 6.605 13 N -0.600 5.600 14 C 0.080 3.920 15 C 0.219 3.781 16 H 0.039 0.961 17 C -0.138 4.138 18 C -0.519 4.519 19 H 0.054 0.946 20 C 0.028 3.972 21 N -0.934 5.934 22 Si 0.927 3.073 23 H -0.285 1.285 24 H -0.277 1.277 25 H -0.252 1.252 26 C -0.078 4.078 27 C -0.207 4.207 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.087 0.913 44 H 0.047 0.953 45 H 0.047 0.953 46 H 0.061 0.939 47 H 0.268 0.732 48 H 0.140 0.860 49 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.366 -19.797 5.170 31.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.023 4.023 4 O -0.248 6.248 5 C 0.067 3.933 6 C -0.179 4.179 7 C -0.099 4.099 8 C -0.120 4.120 9 C -0.092 4.092 10 C -0.157 4.157 11 C 0.283 3.717 12 O -0.488 6.488 13 N -0.331 5.331 14 C -0.063 4.063 15 C 0.116 3.884 16 H 0.057 0.943 17 C -0.196 4.196 18 C -0.558 4.558 19 H 0.072 0.928 20 C -0.172 4.172 21 N -0.573 5.573 22 Si 0.752 3.248 23 H -0.211 1.211 24 H -0.203 1.203 25 H -0.176 1.176 26 C -0.096 4.096 27 C -0.225 4.225 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.123 0.877 40 H 0.134 0.866 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.106 0.894 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.158 0.842 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -22.974 -19.630 5.651 30.742 hybrid contribution 0.708 0.827 0.528 1.210 sum -22.266 -18.802 6.179 29.791 Atomic orbital electron populations 1.21685 0.92905 1.03177 1.02691 1.21499 0.97095 0.93968 1.03388 1.23106 0.77134 0.99861 1.02204 1.86026 1.22867 1.27123 1.88741 1.19165 0.92536 0.84563 0.96987 1.20578 0.91763 0.98885 1.06708 1.21050 1.00522 0.90970 0.97401 1.19777 0.94027 0.94478 1.03767 1.20151 1.00527 0.93199 0.95312 1.21655 1.02466 0.92192 0.99361 1.21499 0.78842 0.88388 0.82967 1.90605 1.57379 1.68058 1.32776 1.48315 1.57191 1.20717 1.06833 1.21848 1.01005 0.98219 0.85197 1.19094 0.91028 0.81662 0.96571 0.94323 1.22057 0.97995 0.98638 1.00943 1.21381 0.94407 1.25155 1.14809 0.92769 1.25625 0.94920 0.97606 0.99016 1.69989 1.03776 1.42838 1.40741 0.86064 0.78983 0.79120 0.80613 1.21140 1.20255 1.17581 1.21069 0.93716 0.97894 0.96908 1.21418 1.00909 0.91784 1.08402 0.91039 0.91916 0.91884 0.91164 0.91212 0.91294 0.91171 0.84604 0.84645 0.91071 0.92023 0.87680 0.86553 0.90764 0.92154 0.89403 0.93365 0.93417 0.91955 0.92301 0.84215 0.83626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 71.98 0.71 -0.21 16 2 C -0.12 -1.20 6.30 30.60 0.19 -1.00 16 3 C 0.05 0.64 4.74 71.99 0.34 0.98 16 4 O -0.33 -6.41 10.14 -92.39 -0.94 -7.34 16 5 C 0.11 2.29 6.69 22.51 0.15 2.44 16 6 C -0.16 -3.34 9.99 22.36 0.22 -3.11 16 7 C -0.08 -1.73 9.69 22.25 0.22 -1.51 16 8 C -0.12 -2.62 5.14 -19.85 -0.10 -2.72 16 9 C -0.05 -1.39 4.63 29.85 0.14 -1.25 16 10 C -0.12 -3.07 4.23 29.85 0.13 -2.94 16 11 C 0.49 19.09 7.67 87.66 0.67 19.76 16 12 O -0.61 -28.86 15.31 -3.03 -0.05 -28.91 16 13 N -0.60 -23.99 2.75 -826.80 -2.28 -26.27 16 14 C 0.08 2.39 9.39 127.77 1.20 3.59 16 15 C 0.22 10.48 2.30 44.25 0.10 10.58 16 16 H 0.04 2.06 4.05 -2.39 -0.01 2.05 16 17 C -0.14 -5.60 9.10 71.98 0.65 -4.95 16 18 C -0.52 -28.90 8.72 25.60 0.22 -28.67 16 19 H 0.05 3.21 6.82 -2.91 -0.02 3.19 16 20 C 0.03 1.62 5.47 84.65 0.46 2.08 16 21 N -0.93 -57.42 13.96 21.44 0.30 -57.12 16 22 Si 0.93 46.80 26.99 68.60 1.85 48.65 16 23 H -0.29 -14.93 7.11 99.48 0.71 -14.23 16 24 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 25 H -0.25 -12.08 6.82 99.48 0.68 -11.41 16 26 C -0.08 -1.48 9.69 22.25 0.22 -1.26 16 27 C -0.21 -3.68 9.04 22.37 0.20 -3.48 16 28 H 0.07 0.36 8.14 -2.38 -0.02 0.34 16 29 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 34 H 0.07 0.75 7.66 -2.39 -0.02 0.73 16 35 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 36 H 0.14 2.64 8.06 -2.91 -0.02 2.61 16 37 H 0.07 1.91 8.04 -2.39 -0.02 1.89 16 38 H 0.06 1.79 8.04 -2.39 -0.02 1.78 16 39 H 0.11 2.47 7.40 -2.39 -0.02 2.46 16 40 H 0.12 2.38 8.11 -2.39 -0.02 2.37 16 41 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.06 2.08 6.56 -2.39 -0.02 2.06 16 43 H 0.09 2.09 6.44 -2.39 -0.02 2.08 16 44 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 46 H 0.06 2.34 7.84 -2.39 -0.02 2.32 16 47 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 48 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16 49 H 0.15 1.88 6.30 -2.91 -0.02 1.86 16 Total: -1.00 -73.11 395.44 5.51 -67.60 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.89 Total: 15.07 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: 5.73 Total: -11.68 kcal Atomic # 7 Polarization: -81.41 SS G_CDS: -1.98 Total: -83.39 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -0.98 Total: -36.25 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.85 Total: 48.65 kcal Total: -73.11 5.51 -67.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080027884.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.144 kcal (2) G-P(sol) polarization free energy of solvation -73.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds