Wall clock time and date at job start Tue Mar 31 2020 12:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50698 * 119.99724 * 2 1 4 4 C 1.50697 * 120.00041 * 180.02562 * 2 1 3 5 5 O 1.42893 * 109.47487 * 359.97438 * 4 2 1 6 6 C 1.35995 * 117.00240 * 180.02562 * 5 4 2 7 7 C 1.38564 * 120.07366 * 359.72567 * 6 5 4 8 8 C 1.38240 * 119.99737 * 179.74583 * 7 6 5 9 9 C 1.50707 * 119.92236 * 180.25607 * 8 7 6 10 10 N 1.46503 * 109.46927 * 270.24872 * 9 8 7 11 11 C 1.36935 * 119.99659 * 90.00430 * 10 9 8 12 12 H 1.08001 * 119.99690 * 214.06908 * 11 10 9 13 13 C 1.38816 * 120.00047 * 34.06436 * 11 10 9 14 14 N 1.31618 * 119.99970 * 22.82866 * 13 11 10 15 15 Si 1.86803 * 119.99761 * 202.82727 * 13 11 10 16 16 H 1.48503 * 109.46970 * 60.00264 * 15 13 11 17 17 H 1.48503 * 109.46906 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47019 * 300.00239 * 15 13 11 19 19 C 1.46500 * 119.99942 * 270.00397 * 10 9 8 20 20 C 1.53002 * 109.46928 * 95.65947 * 19 10 9 21 21 C 1.53005 * 109.46700 * 179.97438 * 20 19 10 22 22 C 1.38249 * 120.14847 * 0.50542 * 8 7 6 23 23 C 1.38241 * 120.14729 * 359.77044 * 22 8 7 24 24 C 1.38572 * 119.99908 * 359.97438 * 23 22 8 25 25 O 1.35989 * 120.07400 * 179.97438 * 24 23 22 26 26 C 1.42903 * 116.99845 * 0.02562 * 25 24 23 27 27 H 1.07994 * 119.99842 * 359.97438 * 1 2 3 28 28 H 1.07991 * 119.99521 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47365 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47464 * 300.00286 * 3 2 1 31 31 H 1.09000 * 109.47090 * 60.00263 * 3 2 1 32 32 H 1.09007 * 109.47029 * 120.00178 * 4 2 1 33 33 H 1.09003 * 109.46928 * 239.99551 * 4 2 1 34 34 H 1.08001 * 119.99495 * 359.97363 * 7 6 5 35 35 H 1.08991 * 109.47326 * 30.25090 * 9 8 7 36 36 H 1.09003 * 109.46624 * 150.25399 * 9 8 7 37 37 H 0.96995 * 119.99800 * 179.97438 * 14 13 11 38 38 H 1.09002 * 109.46997 * 215.65738 * 19 10 9 39 39 H 1.08998 * 109.47192 * 335.65944 * 19 10 9 40 40 H 1.08990 * 109.47235 * 299.99433 * 20 19 10 41 41 H 1.08998 * 109.47186 * 59.99993 * 20 19 10 42 42 H 1.09002 * 109.47293 * 299.99832 * 21 20 19 43 43 H 1.08998 * 109.47126 * 60.00178 * 21 20 19 44 44 H 1.08997 * 109.46726 * 180.02562 * 21 20 19 45 45 H 1.07997 * 119.92722 * 179.74591 * 22 8 7 46 46 H 1.07998 * 120.00130 * 179.97438 * 23 22 8 47 47 H 1.09000 * 109.47367 * 299.99744 * 26 25 24 48 48 H 1.09001 * 109.47348 * 60.00182 * 26 25 24 49 49 H 1.09001 * 109.46779 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3051 -0.0006 5 8 1.1351 -2.3912 -0.0005 6 6 1.6549 -3.6479 -0.0004 7 6 3.0284 -3.8312 -0.0062 8 6 3.5551 -5.1093 -0.0008 9 6 5.0492 -5.3067 -0.0013 10 7 5.5328 -5.3710 -1.3827 11 6 5.9142 -4.2254 -2.0286 12 1 5.7455 -4.1224 -3.0904 13 6 6.5175 -3.1963 -1.3186 14 7 7.1263 -3.4511 -0.1799 15 14 6.4652 -1.4499 -1.9795 16 1 5.0521 -1.0132 -2.1131 17 1 7.1771 -0.5444 -1.0421 18 1 7.1253 -1.4037 -3.3089 19 6 5.6083 -6.6610 -2.0730 20 6 4.3427 -6.8677 -2.9075 21 6 4.4220 -8.2147 -3.6289 22 6 2.7144 -6.2068 -0.0002 23 6 1.3432 -6.0310 -0.0002 24 6 0.8086 -4.7525 -0.0002 25 8 -0.5400 -4.5778 -0.0007 26 6 -1.3470 -5.7572 -0.0006 27 1 -0.5399 0.9353 0.0004 28 1 -0.5399 -0.9353 -0.0004 29 1 3.1352 1.1060 -0.0005 30 1 1.8001 1.8768 -0.8900 31 1 1.8002 1.8767 0.8900 32 1 2.6903 -1.3624 -0.8906 33 1 2.6903 -1.3631 0.8894 34 1 3.6872 -2.9755 -0.0112 35 1 5.5261 -4.4719 0.5121 36 1 5.2929 -6.2365 0.5127 37 1 7.5482 -2.7321 0.3160 38 1 6.4805 -6.6727 -2.7267 39 1 5.6940 -7.4617 -1.3384 40 1 3.4706 -6.8560 -2.2539 41 1 4.2570 -6.0670 -3.6421 42 1 5.2941 -8.2260 -4.2827 43 1 4.5079 -9.0156 -2.8946 44 1 3.5205 -8.3617 -4.2238 45 1 3.1297 -7.2037 -0.0001 46 1 0.6886 -6.8900 -0.0001 47 1 -1.1278 -6.3475 -0.8903 48 1 -1.1284 -6.3470 0.8896 49 1 -2.4003 -5.4767 -0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092398543.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:03 Heat of formation + Delta-G solvation = -18.913911 kcal Electronic energy + Delta-G solvation = -28107.156521 eV Core-core repulsion = 24422.105154 eV Total energy + Delta-G solvation = -3685.051367 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.11677 -38.31683 -37.27385 -35.65354 -34.82188 -33.00312 -31.09753 -29.76509 -29.68427 -27.35934 -27.15875 -26.64874 -25.60341 -25.06327 -22.18548 -21.79519 -20.67876 -20.06055 -18.42045 -18.01671 -16.91316 -16.39935 -16.11539 -15.81311 -15.14215 -14.97351 -14.84651 -14.35273 -14.13610 -13.84662 -13.74721 -13.44172 -13.34679 -13.20958 -13.11608 -12.62740 -12.38109 -12.20760 -11.77711 -11.70253 -11.59187 -11.30948 -11.10373 -11.04770 -10.97929 -10.89939 -10.78424 -10.68068 -10.60390 -10.36882 -10.24590 -10.02932 -9.93816 -9.60480 -8.90477 -8.53422 -8.08151 -7.21643 -6.65669 -5.84670 -3.37267 1.88736 2.03834 2.30742 3.29739 3.36946 3.39332 3.49058 3.60897 4.28626 4.45332 4.87281 5.14061 5.16617 5.23952 5.27634 5.34658 5.45695 5.50463 5.52063 5.52744 5.55982 5.61794 5.68888 5.72307 5.75276 5.81519 5.94400 5.95483 6.05515 6.09213 6.13547 6.23499 6.27004 6.46152 6.60449 6.60821 6.65228 6.69114 6.74257 6.88109 6.97602 6.98038 7.18093 7.29958 7.35454 7.47249 7.68684 7.77570 8.04641 8.45155 9.12675 9.76570 10.33030 11.15049 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.008346 B = 0.006431 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3353.953567 B = 4352.824213 C = 6974.216921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.136 4.136 3 C -0.115 4.115 4 C 0.092 3.908 5 O -0.308 6.308 6 C 0.095 3.905 7 C -0.148 4.148 8 C -0.061 4.061 9 C 0.171 3.829 10 N -0.575 5.575 11 C -0.248 4.248 12 H 0.060 0.940 13 C 0.009 3.991 14 N -0.885 5.885 15 Si 0.885 3.115 16 H -0.281 1.281 17 H -0.288 1.288 18 H -0.280 1.280 19 C 0.149 3.851 20 C -0.147 4.147 21 C -0.146 4.146 22 C -0.119 4.119 23 C -0.176 4.176 24 C 0.072 3.928 25 O -0.314 6.314 26 C 0.031 3.969 27 H 0.095 0.905 28 H 0.112 0.888 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.133 0.867 35 H 0.108 0.892 36 H 0.034 0.966 37 H 0.256 0.744 38 H 0.044 0.956 39 H 0.034 0.966 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.048 0.952 43 H 0.046 0.954 44 H 0.041 0.959 45 H 0.116 0.884 46 H 0.123 0.877 47 H 0.050 0.950 48 H 0.049 0.951 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.033 -1.243 1.607 12.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.136 4.136 3 C -0.171 4.171 4 C 0.017 3.983 5 O -0.222 6.222 6 C 0.050 3.950 7 C -0.168 4.168 8 C -0.065 4.065 9 C 0.045 3.955 10 N -0.294 5.294 11 C -0.378 4.378 12 H 0.078 0.922 13 C -0.190 4.190 14 N -0.528 5.528 15 Si 0.714 3.286 16 H -0.207 1.207 17 H -0.214 1.214 18 H -0.206 1.206 19 C 0.023 3.977 20 C -0.187 4.187 21 C -0.204 4.204 22 C -0.138 4.138 23 C -0.195 4.195 24 C 0.028 3.972 25 O -0.228 6.228 26 C -0.065 4.065 27 H 0.113 0.887 28 H 0.130 0.870 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.150 0.850 35 H 0.126 0.874 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.134 0.866 46 H 0.141 0.859 47 H 0.068 0.932 48 H 0.068 0.932 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.163 -0.893 1.713 12.315 hybrid contribution 0.058 0.656 -0.489 0.820 sum -12.105 -0.237 1.224 12.169 Atomic orbital electron populations 1.23684 0.95393 1.02183 1.00182 1.21569 0.95885 0.94004 1.02161 1.20750 1.00410 0.93834 1.02148 1.21541 0.91054 0.83540 1.02181 1.85998 1.34906 1.11716 1.89602 1.18240 0.91030 0.82712 1.02991 1.21055 0.91490 0.99340 1.04910 1.21001 0.99810 0.91224 0.94438 1.20110 0.85605 1.02138 0.87654 1.43744 1.71935 1.02358 1.11351 1.18987 1.32241 0.93066 0.93501 0.92221 1.25020 0.96960 0.99161 0.97889 1.69959 1.34637 1.31402 1.16779 0.86632 0.78023 0.85256 0.78652 1.20740 1.21406 1.20592 1.20905 0.94645 0.87767 0.94362 1.22193 1.01186 0.95604 0.99748 1.21723 1.00521 0.98267 0.99900 1.20719 0.91881 0.98733 1.02473 1.20886 0.96479 0.94274 1.07821 1.18033 0.81963 0.91591 1.05654 1.86107 1.14314 1.32425 1.89966 1.22919 0.94805 0.87894 1.00836 0.88700 0.87021 0.91685 0.91280 0.91267 0.90693 0.91099 0.84971 0.87425 0.94721 0.93398 0.93794 0.94715 0.92291 0.92682 0.93329 0.93493 0.93941 0.86570 0.85922 0.93189 0.93229 0.88991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.44 13.71 29.01 0.40 -2.05 16 2 C -0.14 -1.98 6.05 -101.07 -0.61 -2.59 16 3 C -0.11 -1.37 10.05 36.00 0.36 -1.01 16 4 C 0.09 1.57 5.07 36.00 0.18 1.75 16 5 O -0.31 -5.82 8.32 -34.23 -0.28 -6.10 16 6 C 0.10 1.87 6.70 -39.12 -0.26 1.61 16 7 C -0.15 -3.07 8.69 -39.46 -0.34 -3.42 16 8 C -0.06 -1.26 5.44 -104.61 -0.57 -1.82 16 9 C 0.17 3.87 5.45 -5.19 -0.03 3.84 16 10 N -0.58 -13.71 2.44 -174.60 -0.43 -14.14 16 11 C -0.25 -6.51 9.48 -15.06 -0.14 -6.65 16 12 H 0.06 1.60 7.93 -52.49 -0.42 1.18 16 13 C 0.01 0.25 4.95 -17.43 -0.09 0.16 16 14 N -0.89 -24.17 11.31 55.49 0.63 -23.55 16 15 Si 0.89 20.66 29.61 -169.99 -5.03 15.63 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 C 0.15 3.07 5.72 -4.04 -0.02 3.05 16 20 C -0.15 -2.69 6.23 -26.73 -0.17 -2.86 16 21 C -0.15 -2.15 9.91 37.16 0.37 -1.78 16 22 C -0.12 -2.12 7.86 -39.58 -0.31 -2.43 16 23 C -0.18 -2.90 9.04 -39.46 -0.36 -3.26 16 24 C 0.07 1.32 6.70 -39.12 -0.26 1.06 16 25 O -0.31 -5.25 10.28 -34.21 -0.35 -5.60 16 26 C 0.03 0.36 9.81 101.05 0.99 1.35 16 27 H 0.09 1.07 8.05 -52.49 -0.42 0.65 16 28 H 0.11 1.70 6.84 -52.49 -0.36 1.34 16 29 H 0.06 0.80 8.00 -51.93 -0.42 0.39 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 1.38 7.65 -51.93 -0.40 0.98 16 33 H 0.07 1.17 7.67 -51.93 -0.40 0.77 16 34 H 0.13 2.88 6.30 -52.49 -0.33 2.55 16 35 H 0.11 2.74 5.26 -51.93 -0.27 2.47 16 36 H 0.03 0.74 7.80 -51.93 -0.40 0.34 16 37 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 38 H 0.04 0.93 8.09 -51.93 -0.42 0.51 16 39 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 40 H 0.06 1.10 6.13 -51.93 -0.32 0.78 16 41 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.12 1.89 8.02 -52.49 -0.42 1.47 16 46 H 0.12 1.64 6.30 -52.49 -0.33 1.31 16 47 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 48 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 49 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 396.65 15.07 5.98 5.98 Total: -1.00 -28.82 396.65 -8.56 -37.38 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -8.20 Total: 5.47 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -0.86 Total: -15.06 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.20 Total: -37.68 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -0.64 Total: -11.70 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -28.82 -8.56 -37.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398543.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.462 kcal (2) G-P(sol) polarization free energy of solvation -28.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds