Wall clock time and date at job start Tue Mar 31 2020 14:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47304 * 2 1 4 4 O 1.42898 * 109.47210 * 180.02562 * 3 2 1 5 5 C 1.35892 * 116.99780 * 180.02562 * 4 3 2 6 6 C 1.38795 * 120.03316 * 0.02562 * 5 4 3 7 7 C 1.38155 * 120.05610 * 179.70625 * 6 5 4 8 8 C 1.38189 * 120.11079 * 0.54716 * 7 6 5 9 9 C 1.50695 * 119.97570 * 179.72559 * 8 7 6 10 10 N 1.46903 * 109.47407 * 264.75669 * 9 8 7 11 11 C 1.46901 * 110.99975 * 288.66040 * 10 9 8 12 12 C 1.50693 * 109.47069 * 171.92435 * 11 10 9 13 13 H 1.08000 * 120.00293 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00024 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99721 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00105 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47101 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.46922 * 120.00328 * 16 14 12 19 19 H 1.48500 * 109.47018 * 239.99926 * 16 14 12 20 20 C 1.46898 * 111.00308 * 164.70311 * 10 9 8 21 21 C 1.52992 * 109.47593 * 293.47899 * 20 10 9 22 22 C 1.53006 * 117.50166 * 117.12802 * 21 20 10 23 23 C 1.52997 * 117.50337 * 185.78811 * 21 20 10 24 24 C 1.38756 * 120.05457 * 359.45446 * 8 7 6 25 25 O 1.35894 * 120.03191 * 180.29839 * 24 8 7 26 26 C 1.38618 * 120.02760 * 179.97438 * 5 4 3 27 27 H 1.09004 * 109.47280 * 300.00401 * 1 2 3 28 28 H 1.09007 * 109.46758 * 60.00182 * 1 2 3 29 29 H 1.08991 * 109.47260 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47057 * 239.99970 * 2 1 3 31 31 H 1.08999 * 109.46945 * 120.00046 * 2 1 3 32 32 H 1.09003 * 109.46836 * 59.99304 * 3 2 1 33 33 H 1.09000 * 109.46682 * 300.00152 * 3 2 1 34 34 H 1.08003 * 119.96714 * 359.97438 * 6 5 4 35 35 H 1.07997 * 119.94158 * 180.29131 * 7 6 5 36 36 H 1.09002 * 109.47485 * 144.75807 * 9 8 7 37 37 H 1.08998 * 109.47317 * 24.75498 * 9 8 7 38 38 H 1.08997 * 109.47227 * 291.93433 * 11 10 9 39 39 H 1.09005 * 109.46701 * 51.92817 * 11 10 9 40 40 H 0.97005 * 120.00006 * 179.97438 * 15 14 12 41 41 H 1.08997 * 109.47364 * 173.47468 * 20 10 9 42 42 H 1.09006 * 109.46791 * 53.47628 * 20 10 9 43 43 H 1.09007 * 115.55000 * 331.46285 * 21 20 10 44 44 H 1.09001 * 117.50044 * 215.00784 * 22 21 20 45 45 H 1.09004 * 117.49639 * 0.02562 * 22 21 20 46 46 H 1.08997 * 117.49588 * 359.97438 * 23 21 20 47 47 H 1.08996 * 117.49976 * 144.99416 * 23 21 20 48 48 H 0.96702 * 114.00415 * 89.99225 * 25 24 8 49 49 H 1.08007 * 120.05238 * 0.04881 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4691 1.4425 -0.0006 5 6 4.0860 2.6533 -0.0001 6 6 3.3307 3.8178 0.0014 7 6 3.9574 5.0490 0.0080 8 6 5.3372 5.1246 0.0017 9 6 6.0175 6.4692 0.0026 10 7 6.3450 6.8534 -1.3769 11 6 7.4419 6.0318 -1.9059 12 6 7.6172 6.3142 -3.3757 13 1 6.9781 7.0324 -3.8677 14 6 8.5943 5.6563 -4.0924 15 7 9.3730 4.7820 -3.4932 16 14 8.8122 6.0068 -5.9142 17 1 7.8189 7.0232 -6.3450 18 1 10.1837 6.5209 -6.1588 19 1 8.6076 4.7553 -6.6870 20 6 6.6699 8.2834 -1.4622 21 6 5.4203 9.1099 -1.1521 22 6 5.4602 10.0156 0.0804 23 6 5.5168 10.6273 -1.3216 24 6 6.0968 3.9634 0.0001 25 8 7.4537 4.0383 0.0000 26 6 5.4702 2.7266 -0.0001 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 2.2521 3.7612 0.0018 35 1 3.3679 5.9538 0.0140 36 1 6.9333 6.4127 0.5911 37 1 5.3510 7.2134 0.4385 38 1 8.3640 6.2727 -1.3770 39 1 7.2067 4.9769 -1.7641 40 1 10.0602 4.3189 -3.9974 41 1 7.0199 8.5172 -2.4677 42 1 7.4516 8.5221 -0.7408 43 1 4.4701 8.6354 -1.3975 44 1 4.5362 10.1370 0.6459 45 1 6.3769 10.0230 0.6701 46 1 6.4707 11.0370 -1.6536 47 1 4.6302 11.1513 -1.6786 48 1 7.8466 4.0590 0.8833 49 1 6.0597 1.8216 -0.0013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093091500.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:28 Heat of formation + Delta-G solvation = -31.543574 kcal Electronic energy + Delta-G solvation = -27172.739862 eV Core-core repulsion = 23487.140832 eV Total energy + Delta-G solvation = -3685.599031 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.15568 -38.64953 -37.53099 -35.78582 -35.21588 -33.99231 -32.39251 -30.58148 -29.53237 -27.32496 -26.88485 -25.82693 -23.71118 -22.80702 -22.15326 -21.68357 -21.02297 -20.40042 -19.48397 -18.54263 -16.68202 -16.54716 -16.31817 -15.93491 -15.45359 -15.23504 -14.75288 -14.41065 -14.29310 -14.09274 -13.99851 -13.50105 -13.29715 -13.17290 -12.91444 -12.47988 -12.35051 -12.17095 -11.74091 -11.64352 -11.53479 -11.34353 -11.26330 -11.23094 -11.09674 -10.86825 -10.82494 -10.61344 -10.45326 -10.34606 -10.03613 -10.02109 -9.53955 -9.45677 -8.93162 -8.42053 -8.26018 -7.78178 -7.09426 -5.86337 -3.86916 1.58621 1.72770 3.18979 3.38086 3.45408 3.50111 3.93224 4.13672 4.54509 4.61865 4.66553 4.74972 4.93439 4.99897 5.07143 5.16337 5.19391 5.22235 5.27255 5.29150 5.39556 5.42225 5.48378 5.61543 5.65550 5.68169 5.78773 5.81982 5.82672 5.90873 5.95306 6.04974 6.15507 6.20712 6.27996 6.33745 6.35277 6.50585 6.58005 6.68301 6.85965 6.89844 6.99453 7.56953 7.57828 7.61913 7.94381 8.18022 8.34729 8.40925 8.72506 9.21620 9.75124 11.23298 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009538 B = 0.003807 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2935.074750 B = 7353.463493 C = 9053.272489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.060 3.940 4 O -0.318 6.318 5 C 0.135 3.865 6 C -0.223 4.223 7 C -0.052 4.052 8 C -0.122 4.122 9 C 0.103 3.897 10 N -0.529 5.529 11 C 0.192 3.808 12 C -0.508 4.508 13 H 0.060 0.940 14 C 0.056 3.944 15 N -0.890 5.890 16 Si 0.889 3.111 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.285 1.285 20 C 0.092 3.908 21 C -0.134 4.134 22 C -0.192 4.192 23 C -0.184 4.184 24 C 0.166 3.834 25 O -0.466 6.466 26 C -0.182 4.182 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.029 0.971 37 H 0.068 0.932 38 H -0.014 1.014 39 H 0.060 0.940 40 H 0.257 0.743 41 H 0.090 0.910 42 H 0.019 0.981 43 H 0.107 0.893 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.088 0.912 48 H 0.377 0.623 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.401 -1.857 11.884 18.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.016 4.016 4 O -0.233 6.233 5 C 0.090 3.910 6 C -0.242 4.242 7 C -0.070 4.070 8 C -0.123 4.123 9 C -0.025 4.025 10 N -0.253 5.253 11 C 0.068 3.932 12 C -0.547 4.547 13 H 0.078 0.922 14 C -0.145 4.145 15 N -0.529 5.529 16 Si 0.718 3.282 17 H -0.198 1.198 18 H -0.213 1.213 19 H -0.212 1.212 20 C -0.036 4.036 21 C -0.153 4.153 22 C -0.229 4.229 23 C -0.221 4.221 24 C 0.120 3.880 25 O -0.276 6.276 26 C -0.201 4.201 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.047 0.953 37 H 0.087 0.913 38 H 0.004 0.996 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.108 0.892 42 H 0.037 0.963 43 H 0.125 0.875 44 H 0.104 0.896 45 H 0.107 0.893 46 H 0.109 0.891 47 H 0.106 0.894 48 H 0.232 0.768 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.628 -2.262 10.941 18.406 hybrid contribution 0.838 0.400 -0.160 0.942 sum -13.789 -1.862 10.781 17.602 Atomic orbital electron populations 1.21689 0.94406 1.02366 1.02200 1.21484 0.95884 0.95130 1.03682 1.22814 0.78934 0.98446 1.01373 1.86015 1.20879 1.27361 1.89001 1.18626 0.91637 0.83826 0.96896 1.21091 0.99491 0.92332 1.11287 1.20595 0.93451 0.96701 0.96290 1.20111 0.93529 0.95235 1.03442 1.20768 0.97604 0.92054 0.92108 1.62182 1.44472 1.02759 1.15913 1.19913 0.85365 0.94103 0.93858 1.21267 1.15869 1.23310 0.94283 0.92207 1.24954 0.96100 0.95392 0.98052 1.70012 1.20555 1.26730 1.35640 0.86581 0.77673 0.78058 0.85933 1.19781 1.21281 1.21157 1.21582 0.92132 0.88130 1.01743 1.22485 1.01364 0.91082 1.00367 1.23039 1.02345 1.06389 0.91102 1.22904 1.02681 0.96747 0.99776 1.17966 0.83636 0.90616 0.95788 1.85264 1.14995 1.95823 1.31483 1.20572 0.91697 0.98441 1.09437 0.92438 0.92321 0.91859 0.90790 0.90948 0.92230 0.92046 0.85959 0.85792 0.95251 0.91335 0.99579 0.92241 0.93326 0.89199 0.96278 0.87516 0.89569 0.89344 0.89057 0.89361 0.76779 0.85057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.12 -1.07 6.30 -26.73 -0.17 -1.23 16 3 C 0.06 0.63 4.74 37.16 0.18 0.81 16 4 O -0.32 -4.63 10.13 -19.40 -0.20 -4.83 16 5 C 0.14 2.16 6.68 -39.24 -0.26 1.90 16 6 C -0.22 -3.26 9.04 -39.41 -0.36 -3.61 16 7 C -0.05 -0.80 9.67 -39.63 -0.38 -1.19 16 8 C -0.12 -2.17 5.17 -104.45 -0.54 -2.71 16 9 C 0.10 1.87 4.84 -4.98 -0.02 1.84 16 10 N -0.53 -11.51 4.46 -237.53 -1.06 -12.57 16 11 C 0.19 5.10 3.78 -4.98 -0.02 5.08 16 12 C -0.51 -14.73 8.35 -34.44 -0.29 -15.02 16 13 H 0.06 1.73 7.05 -52.49 -0.37 1.36 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -27.26 13.29 55.43 0.74 -26.52 16 16 Si 0.89 22.37 29.54 -169.99 -5.02 17.35 16 17 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 C 0.09 1.81 5.08 -3.83 -0.02 1.79 16 21 C -0.13 -2.11 4.68 -90.62 -0.42 -2.54 16 22 C -0.19 -2.50 10.06 -26.69 -0.27 -2.77 16 23 C -0.18 -2.47 10.25 -26.70 -0.27 -2.74 16 24 C 0.17 3.05 5.63 -39.24 -0.22 2.83 16 25 O -0.47 -8.95 10.12 -19.41 -0.20 -9.15 16 26 C -0.18 -3.17 9.93 -39.29 -0.39 -3.56 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.55 7.66 -51.93 -0.40 0.16 16 33 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 34 H 0.12 1.44 6.29 -52.48 -0.33 1.11 16 35 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.03 0.54 7.60 -51.93 -0.39 0.15 16 37 H 0.07 1.09 6.73 -51.93 -0.35 0.74 16 38 H -0.01 -0.39 8.14 -51.93 -0.42 -0.82 16 39 H 0.06 1.70 4.63 -51.93 -0.24 1.46 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.09 1.98 6.49 -51.93 -0.34 1.64 16 42 H 0.02 0.37 7.85 -51.93 -0.41 -0.03 16 43 H 0.11 1.72 8.14 -51.92 -0.42 1.30 16 44 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.09 1.15 8.03 -51.93 -0.42 0.73 16 46 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 47 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 48 H 0.38 5.10 9.06 45.56 0.41 5.51 16 49 H 0.13 2.19 8.06 -52.48 -0.42 1.77 16 LS Contribution 393.34 15.07 5.93 5.93 Total: -1.00 -33.42 393.34 -10.44 -43.86 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -7.44 Total: 6.11 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: -3.19 Total: -20.17 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: -0.32 Total: -39.09 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.39 Total: -13.98 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.42 -10.44 -43.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093091500.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.313 kcal (2) G-P(sol) polarization free energy of solvation -33.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds