Wall clock time and date at job start Tue Mar 31 2020 14:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47304 * 2 1 4 4 O 1.42898 * 109.47210 * 180.02562 * 3 2 1 5 5 C 1.35892 * 116.99780 * 180.02562 * 4 3 2 6 6 C 1.38795 * 120.03316 * 0.02562 * 5 4 3 7 7 C 1.38155 * 120.05610 * 179.70625 * 6 5 4 8 8 C 1.38189 * 120.11079 * 0.54716 * 7 6 5 9 9 C 1.50695 * 119.97570 * 179.72559 * 8 7 6 10 10 N 1.46903 * 109.47407 * 264.75669 * 9 8 7 11 11 C 1.46901 * 110.99975 * 288.66040 * 10 9 8 12 12 C 1.50693 * 109.47069 * 171.92435 * 11 10 9 13 13 H 1.08000 * 120.00293 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00024 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99721 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00105 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47101 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.46922 * 120.00328 * 16 14 12 19 19 H 1.48500 * 109.47018 * 239.99926 * 16 14 12 20 20 C 1.46898 * 111.00308 * 164.70311 * 10 9 8 21 21 C 1.52992 * 109.47593 * 293.47899 * 20 10 9 22 22 C 1.53006 * 117.50166 * 117.12802 * 21 20 10 23 23 C 1.52997 * 117.50337 * 185.78811 * 21 20 10 24 24 C 1.38756 * 120.05457 * 359.45446 * 8 7 6 25 25 O 1.35894 * 120.03191 * 180.29839 * 24 8 7 26 26 C 1.38618 * 120.02760 * 179.97438 * 5 4 3 27 27 H 1.09004 * 109.47280 * 300.00401 * 1 2 3 28 28 H 1.09007 * 109.46758 * 60.00182 * 1 2 3 29 29 H 1.08991 * 109.47260 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47057 * 239.99970 * 2 1 3 31 31 H 1.08999 * 109.46945 * 120.00046 * 2 1 3 32 32 H 1.09003 * 109.46836 * 59.99304 * 3 2 1 33 33 H 1.09000 * 109.46682 * 300.00152 * 3 2 1 34 34 H 1.08003 * 119.96714 * 359.97438 * 6 5 4 35 35 H 1.07997 * 119.94158 * 180.29131 * 7 6 5 36 36 H 1.09002 * 109.47485 * 144.75807 * 9 8 7 37 37 H 1.08998 * 109.47317 * 24.75498 * 9 8 7 38 38 H 1.08997 * 109.47227 * 291.93433 * 11 10 9 39 39 H 1.09005 * 109.46701 * 51.92817 * 11 10 9 40 40 H 0.97005 * 120.00006 * 179.97438 * 15 14 12 41 41 H 1.08997 * 109.47364 * 173.47468 * 20 10 9 42 42 H 1.09006 * 109.46791 * 53.47628 * 20 10 9 43 43 H 1.09007 * 115.55000 * 331.46285 * 21 20 10 44 44 H 1.09001 * 117.50044 * 215.00784 * 22 21 20 45 45 H 1.09004 * 117.49639 * 0.02562 * 22 21 20 46 46 H 1.08997 * 117.49588 * 359.97438 * 23 21 20 47 47 H 1.08996 * 117.49976 * 144.99416 * 23 21 20 48 48 H 0.96702 * 114.00415 * 89.99225 * 25 24 8 49 49 H 1.08007 * 120.05238 * 0.04881 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4691 1.4425 -0.0006 5 6 4.0860 2.6533 -0.0001 6 6 3.3307 3.8178 0.0014 7 6 3.9574 5.0490 0.0080 8 6 5.3372 5.1246 0.0017 9 6 6.0175 6.4692 0.0026 10 7 6.3450 6.8534 -1.3769 11 6 7.4419 6.0318 -1.9059 12 6 7.6172 6.3142 -3.3757 13 1 6.9781 7.0324 -3.8677 14 6 8.5943 5.6563 -4.0924 15 7 9.3730 4.7820 -3.4932 16 14 8.8122 6.0068 -5.9142 17 1 7.8189 7.0232 -6.3450 18 1 10.1837 6.5209 -6.1588 19 1 8.6076 4.7553 -6.6870 20 6 6.6699 8.2834 -1.4622 21 6 5.4203 9.1099 -1.1521 22 6 5.4602 10.0156 0.0804 23 6 5.5168 10.6273 -1.3216 24 6 6.0968 3.9634 0.0001 25 8 7.4537 4.0383 0.0000 26 6 5.4702 2.7266 -0.0001 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 2.2521 3.7612 0.0018 35 1 3.3679 5.9538 0.0140 36 1 6.9333 6.4127 0.5911 37 1 5.3510 7.2134 0.4385 38 1 8.3640 6.2727 -1.3770 39 1 7.2067 4.9769 -1.7641 40 1 10.0602 4.3189 -3.9974 41 1 7.0199 8.5172 -2.4677 42 1 7.4516 8.5221 -0.7408 43 1 4.4701 8.6354 -1.3975 44 1 4.5362 10.1370 0.6459 45 1 6.3769 10.0230 0.6701 46 1 6.4707 11.0370 -1.6536 47 1 4.6302 11.1513 -1.6786 48 1 7.8466 4.0590 0.8833 49 1 6.0597 1.8216 -0.0013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093091500.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:27 Heat of formation + Delta-G solvation = -52.942835 kcal Electronic energy + Delta-G solvation = -27173.667804 eV Core-core repulsion = 23487.140832 eV Total energy + Delta-G solvation = -3686.526972 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.39661 -39.92312 -38.86029 -37.09068 -36.68401 -34.85821 -34.46441 -31.93212 -30.85067 -29.29180 -27.90373 -27.09687 -25.50443 -23.94988 -23.23140 -22.98511 -22.17728 -21.76455 -20.94287 -19.78367 -18.58390 -17.92304 -17.30519 -17.20270 -16.93638 -16.65922 -16.42932 -15.86971 -15.47182 -15.36603 -15.01415 -14.92800 -14.76215 -14.48065 -14.22235 -13.78190 -13.53653 -13.42407 -13.12259 -12.99775 -12.94017 -12.71872 -12.63638 -12.49359 -12.34378 -12.28232 -12.08845 -12.04397 -11.85306 -11.74167 -11.44358 -11.38885 -11.12709 -11.00612 -10.68451 -10.48353 -9.70147 -9.09973 -8.84398 -8.11618 -6.20810 0.31775 0.43852 1.37702 1.38866 1.51894 2.16582 2.41952 2.65450 3.00248 3.18688 3.43564 3.49560 3.82369 3.97205 3.99607 4.02703 4.06344 4.13058 4.16084 4.23896 4.31432 4.33388 4.42246 4.54944 4.57845 4.59658 4.73472 4.79998 4.83684 4.86604 4.93294 4.99180 5.02589 5.10393 5.13161 5.19817 5.24698 5.33866 5.35420 5.37233 5.39214 5.48132 5.61279 5.66559 5.72746 5.75058 6.19955 6.45771 6.51126 6.76886 6.92173 6.99731 7.46656 8.97962 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009538 B = 0.003807 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2935.074750 B = 7353.463493 C = 9053.272489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.123 4.123 3 C 0.049 3.951 4 O -0.333 6.333 5 C 0.137 3.863 6 C -0.216 4.216 7 C -0.046 4.046 8 C -0.146 4.146 9 C 0.110 3.890 10 N -0.534 5.534 11 C 0.214 3.786 12 C -0.525 4.525 13 H 0.056 0.944 14 C 0.001 3.999 15 N -0.926 5.926 16 Si 0.960 3.040 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.281 1.281 20 C 0.096 3.904 21 C -0.153 4.153 22 C -0.170 4.170 23 C -0.175 4.175 24 C 0.148 3.852 25 O -0.496 6.496 26 C -0.205 4.205 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.158 0.842 35 H 0.152 0.848 36 H 0.019 0.981 37 H 0.097 0.903 38 H -0.052 1.052 39 H 0.039 0.961 40 H 0.259 0.741 41 H 0.057 0.943 42 H 0.012 0.988 43 H 0.108 0.892 44 H 0.113 0.887 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.110 0.890 48 H 0.394 0.606 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.512 -0.629 12.068 21.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.160 4.160 3 C -0.025 4.025 4 O -0.248 6.248 5 C 0.091 3.909 6 C -0.234 4.234 7 C -0.064 4.064 8 C -0.147 4.147 9 C -0.018 4.018 10 N -0.258 5.258 11 C 0.088 3.912 12 C -0.564 4.564 13 H 0.074 0.926 14 C -0.197 4.197 15 N -0.566 5.566 16 Si 0.785 3.215 17 H -0.188 1.188 18 H -0.204 1.204 19 H -0.207 1.207 20 C -0.032 4.032 21 C -0.171 4.171 22 C -0.207 4.207 23 C -0.212 4.212 24 C 0.103 3.897 25 O -0.308 6.308 26 C -0.224 4.224 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.175 0.825 35 H 0.170 0.830 36 H 0.037 0.963 37 H 0.116 0.884 38 H -0.034 1.034 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.030 0.970 43 H 0.126 0.874 44 H 0.131 0.869 45 H 0.105 0.895 46 H 0.105 0.895 47 H 0.128 0.872 48 H 0.252 0.748 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.759 -1.023 11.147 20.993 hybrid contribution 1.759 -0.039 -0.143 1.765 sum -16.000 -1.062 11.004 19.448 Atomic orbital electron populations 1.21676 0.92489 1.03233 1.02819 1.21516 0.97391 0.93828 1.03283 1.23179 0.76729 1.00084 1.02503 1.86018 1.23278 1.26818 1.88639 1.18725 0.91241 0.85001 0.95917 1.21426 1.01120 0.91241 1.09647 1.20918 0.92523 0.98252 0.94730 1.20193 0.94716 0.94466 1.05344 1.20773 0.97806 0.93327 0.89872 1.62099 1.41947 1.03320 1.18438 1.19450 0.85241 0.93847 0.92693 1.21605 1.15941 1.23150 0.95675 0.92588 1.25852 0.95727 0.95100 1.02999 1.70156 1.21167 1.27719 1.37568 0.85481 0.78025 0.78101 0.79908 1.18802 1.20368 1.20688 1.21490 0.94329 0.87623 0.99716 1.22201 0.98984 0.91954 1.03995 1.23117 1.03599 1.03361 0.90582 1.23012 1.03502 0.94595 1.00126 1.18196 0.83241 0.91536 0.96770 1.85182 1.16186 1.95983 1.33420 1.20631 0.92915 0.97931 1.10967 0.91466 0.92029 0.90940 0.91698 0.90953 0.90351 0.91453 0.82480 0.83020 0.96258 0.88446 1.03423 0.94324 0.93195 0.92473 0.97004 0.87425 0.86909 0.89450 0.89507 0.87189 0.74815 0.85679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.91 71.98 0.71 -0.81 16 2 C -0.12 -1.90 6.30 30.60 0.19 -1.70 16 3 C 0.05 0.94 4.74 71.98 0.34 1.28 16 4 O -0.33 -9.41 10.13 -92.34 -0.94 -10.35 16 5 C 0.14 4.28 6.68 22.49 0.15 4.43 16 6 C -0.22 -5.80 9.04 22.38 0.20 -5.60 16 7 C -0.05 -1.33 9.67 22.24 0.21 -1.12 16 8 C -0.15 -5.21 5.17 -19.75 -0.10 -5.31 16 9 C 0.11 4.01 4.84 85.55 0.41 4.42 16 10 N -0.53 -23.85 4.46 -905.40 -4.04 -27.89 16 11 C 0.21 11.95 3.78 85.55 0.32 12.27 16 12 C -0.53 -31.53 8.35 25.60 0.21 -31.31 16 13 H 0.06 3.32 7.05 -2.91 -0.02 3.30 16 14 C 0.00 0.07 5.46 84.65 0.46 0.53 16 15 N -0.93 -58.74 13.29 21.45 0.28 -58.45 16 16 Si 0.96 46.77 29.54 68.60 2.03 48.80 16 17 H -0.26 -12.35 7.11 99.48 0.71 -11.64 16 18 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 19 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 20 C 0.10 3.87 5.08 86.30 0.44 4.31 16 21 C -0.15 -4.56 4.68 -10.80 -0.05 -4.61 16 22 C -0.17 -3.90 10.06 30.62 0.31 -3.59 16 23 C -0.17 -4.27 10.25 30.62 0.31 -3.95 16 24 C 0.15 5.71 5.63 22.49 0.13 5.83 16 25 O -0.50 -20.56 10.12 -92.36 -0.93 -21.50 16 26 C -0.21 -7.41 9.93 22.46 0.22 -7.19 16 27 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.20 7.66 -2.39 -0.02 1.19 16 33 H 0.07 1.21 7.66 -2.39 -0.02 1.19 16 34 H 0.16 3.06 6.29 -2.91 -0.02 3.05 16 35 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 36 H 0.02 0.74 7.60 -2.39 -0.02 0.72 16 37 H 0.10 2.94 6.73 -2.39 -0.02 2.93 16 38 H -0.05 -3.22 8.14 -2.39 -0.02 -3.24 16 39 H 0.04 2.34 4.63 -2.38 -0.01 2.33 16 40 H 0.26 15.50 8.31 -92.70 -0.77 14.73 16 41 H 0.06 2.62 6.49 -2.39 -0.02 2.60 16 42 H 0.01 0.48 7.85 -2.38 -0.02 0.46 16 43 H 0.11 3.23 8.14 -2.38 -0.02 3.21 16 44 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.09 2.06 8.03 -2.39 -0.02 2.04 16 46 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 48 H 0.39 11.89 9.06 -74.06 -0.67 11.22 16 49 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -75.33 393.34 1.15 -74.17 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: 0.26 Total: 27.33 kcal Atomic # 6 Polarization: -36.61 SS G_CDS: 4.49 Total: -32.12 kcal Atomic # 7 Polarization: -82.59 SS G_CDS: -3.75 Total: -86.34 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -1.87 Total: -31.84 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -75.33 1.15 -74.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093091500.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.232 kcal (2) G-P(sol) polarization free energy of solvation -75.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds