Wall clock time and date at job start Tue Mar 31 2020 12:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47754 * 2 1 4 4 N 1.46496 * 109.47801 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99763 * 84.38202 * 4 3 2 6 6 H 1.08003 * 120.00242 * 325.96729 * 5 4 3 7 7 C 1.38809 * 120.00044 * 145.96170 * 5 4 3 8 8 N 1.31627 * 119.99787 * 336.78733 * 7 5 4 9 9 Si 1.86798 * 120.00371 * 156.78414 * 7 5 4 10 10 H 1.48499 * 109.47046 * 60.00129 * 9 7 5 11 11 H 1.48504 * 109.47515 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47136 * 300.00212 * 9 7 5 13 13 C 1.46494 * 120.00475 * 264.38993 * 4 3 2 14 14 C 1.50707 * 109.47331 * 89.99180 * 13 4 3 15 15 C 1.38260 * 119.94746 * 269.73597 * 14 13 4 16 16 C 1.38143 * 120.05629 * 179.72784 * 15 14 13 17 17 C 1.38736 * 119.94265 * 0.55998 * 16 15 14 18 18 O 1.35897 * 120.05762 * 179.68622 * 17 16 15 19 19 C 1.42901 * 116.99784 * 0.02562 * 18 17 16 20 20 C 1.53004 * 109.46832 * 179.97438 * 19 18 17 21 21 H 1.08994 * 109.82672 * 305.57066 * 20 19 18 22 22 C 1.54381 * 109.82905 * 184.58799 * 20 19 18 23 23 C 1.55310 * 102.25513 * 219.13234 * 22 20 19 24 24 C 1.54947 * 100.93766 * 34.13240 * 23 22 20 25 25 O 1.43240 * 109.82924 * 66.45792 * 20 19 18 26 26 C 1.38739 * 119.88825 * 359.70996 * 17 16 15 27 27 C 1.38141 * 119.94038 * 359.97438 * 26 17 16 28 28 H 1.09001 * 109.46500 * 299.99926 * 1 2 3 29 29 H 1.08999 * 109.47124 * 59.99620 * 1 2 3 30 30 H 1.08998 * 109.47068 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46901 * 239.99728 * 2 1 3 32 32 H 1.09007 * 109.47409 * 120.00513 * 2 1 3 33 33 H 1.09007 * 109.47082 * 300.00713 * 3 2 1 34 34 H 1.09001 * 109.46630 * 59.99769 * 3 2 1 35 35 H 0.97000 * 119.99740 * 179.97438 * 8 7 5 36 36 H 1.08994 * 109.47792 * 209.99656 * 13 4 3 37 37 H 1.09001 * 109.47027 * 330.00074 * 13 4 3 38 38 H 1.07997 * 119.97104 * 359.96949 * 15 14 13 39 39 H 1.08004 * 120.03040 * 180.24686 * 16 15 14 40 40 H 1.08999 * 109.47142 * 299.99825 * 19 18 17 41 41 H 1.08996 * 109.47029 * 60.00101 * 19 18 17 42 42 H 1.09006 * 110.84966 * 337.32222 * 22 20 19 43 43 H 1.08999 * 110.84934 * 100.93941 * 22 20 19 44 44 H 1.08997 * 111.12008 * 276.21383 * 23 22 20 45 45 H 1.08995 * 111.15953 * 152.06871 * 23 22 20 46 46 H 1.08999 * 110.30592 * 204.64273 * 24 23 22 47 47 H 1.08997 * 110.39372 * 82.51599 * 24 23 22 48 48 H 1.07998 * 120.02946 * 179.97438 * 26 17 16 49 49 H 1.08002 * 119.96817 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1893 1.3265 -1.1812 6 1 3.7877 0.7220 -1.9810 7 6 5.3989 1.9861 -1.3500 8 7 5.6772 3.0469 -0.6221 9 14 6.6318 1.3684 -2.6101 10 1 6.0157 1.3975 -3.9609 11 1 7.8341 2.2399 -2.5949 12 1 7.0259 -0.0239 -2.2757 13 6 4.2382 1.5663 1.2616 14 6 4.4895 0.1947 1.8333 15 6 3.5700 -0.3726 2.6961 16 6 3.7954 -1.6320 3.2170 17 6 4.9512 -2.3229 2.8829 18 8 5.1783 -3.5594 3.3990 19 6 4.1841 -4.0876 4.2791 20 6 4.6109 -5.4777 4.7549 21 1 4.8197 -6.1147 3.8954 22 6 3.4912 -6.1040 5.6136 23 6 4.2952 -6.8149 6.7362 24 6 5.4899 -5.8424 6.9031 25 8 5.7792 -5.3725 5.5770 26 6 5.8750 -1.7492 2.0213 27 6 5.6417 -0.4922 1.4980 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 1.6768 1.9562 0.8900 35 1 6.5227 3.5076 -0.7399 36 1 5.1905 2.0648 1.0814 37 1 3.6495 2.1518 1.9678 38 1 2.6730 0.1678 2.9599 39 1 3.0750 -2.0764 3.8878 40 1 4.0722 -3.4273 5.1391 41 1 3.2334 -4.1608 3.7510 42 1 2.8436 -5.3322 6.0296 43 1 2.9146 -6.8246 5.0336 44 1 4.6326 -7.8001 6.4141 45 1 3.7126 -6.8828 7.6549 46 1 6.3514 -6.3686 7.3143 47 1 5.2135 -5.0084 7.5482 48 1 6.7757 -2.2848 1.7600 49 1 6.3604 -0.0453 0.8270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093791590.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:15 Heat of formation + Delta-G solvation = -49.266932 kcal Electronic energy + Delta-G solvation = -27102.941722 eV Core-core repulsion = 23416.574149 eV Total energy + Delta-G solvation = -3686.367573 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.11628 -39.24225 -37.35687 -35.63204 -32.96904 -32.56128 -31.49974 -30.78893 -30.29178 -29.35068 -26.21570 -25.56053 -25.03920 -22.50319 -22.23948 -21.93618 -21.06146 -20.45067 -19.93415 -17.80080 -17.33560 -16.70271 -16.34508 -15.71431 -15.34734 -14.95854 -14.64829 -14.31490 -14.28287 -13.89504 -13.64377 -13.62640 -13.51503 -13.11571 -12.85400 -12.64143 -12.24750 -12.10853 -12.07616 -11.77464 -11.60446 -11.51744 -11.47865 -11.23117 -11.07445 -10.98698 -10.71286 -10.64997 -10.46682 -10.29179 -10.23229 -9.97719 -9.85336 -9.72904 -9.62132 -8.46228 -8.33658 -7.41913 -6.59583 -5.78216 -3.30868 1.99403 2.11759 3.26909 3.38517 3.44998 3.48495 3.60610 4.07282 4.39733 4.43022 4.53120 4.54329 4.78145 4.86811 4.97328 5.15755 5.22228 5.28591 5.31113 5.35519 5.39310 5.41949 5.46773 5.56564 5.58251 5.69946 5.78490 5.78957 5.94005 6.04368 6.09812 6.15681 6.28586 6.34034 6.47637 6.52866 6.63448 6.65611 6.75992 6.79584 6.87782 7.00103 7.10136 7.22194 7.42740 7.47625 7.75152 7.83550 7.90854 8.51542 9.19256 9.83281 10.39603 11.21581 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015579 B = 0.003069 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.895584 B = 9120.423881 C =10201.812217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.147 4.147 3 C 0.149 3.851 4 N -0.576 5.576 5 C -0.250 4.250 6 H 0.060 0.940 7 C 0.010 3.990 8 N -0.886 5.886 9 Si 0.890 3.110 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.281 1.281 13 C 0.173 3.827 14 C -0.100 4.100 15 C -0.084 4.084 16 C -0.214 4.214 17 C 0.103 3.897 18 O -0.312 6.312 19 C 0.054 3.946 20 C 0.083 3.917 21 H 0.091 0.909 22 C -0.148 4.148 23 C -0.155 4.155 24 C 0.045 3.955 25 O -0.367 6.367 26 C -0.154 4.154 27 C -0.061 4.061 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.041 0.959 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.043 0.957 34 H 0.033 0.967 35 H 0.256 0.744 36 H 0.108 0.892 37 H 0.031 0.969 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.060 0.940 48 H 0.119 0.881 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.657 -15.694 14.078 21.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.187 4.187 3 C 0.023 3.977 4 N -0.295 5.295 5 C -0.380 4.380 6 H 0.077 0.923 7 C -0.190 4.190 8 N -0.529 5.529 9 Si 0.719 3.281 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.207 1.207 13 C 0.047 3.953 14 C -0.103 4.103 15 C -0.103 4.103 16 C -0.233 4.233 17 C 0.058 3.942 18 O -0.226 6.226 19 C -0.022 4.022 20 C 0.025 3.975 21 H 0.108 0.892 22 C -0.186 4.186 23 C -0.193 4.193 24 C -0.031 4.031 25 O -0.286 6.286 26 C -0.172 4.172 27 C -0.080 4.080 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.066 0.934 36 H 0.125 0.875 37 H 0.049 0.951 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.099 0.901 45 H 0.103 0.897 46 H 0.104 0.896 47 H 0.078 0.922 48 H 0.137 0.863 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.163 -15.561 13.943 21.522 hybrid contribution 0.156 -0.514 -0.487 0.725 sum -5.007 -16.074 13.455 21.552 Atomic orbital electron populations 1.21725 0.97568 1.00211 1.00908 1.22193 0.93497 1.01145 1.01843 1.20893 0.85179 0.92935 0.98699 1.43753 0.99283 1.84316 1.02143 1.18970 1.03089 1.22920 0.93001 0.92266 1.25026 1.00605 0.95011 0.98359 1.69979 1.23782 1.16563 1.42547 0.86561 0.81150 0.78713 0.81640 1.20760 1.21561 1.20709 1.20075 1.00756 0.88861 0.85642 1.21156 0.93119 1.00942 0.95077 1.20776 0.98561 0.94070 0.96854 1.21014 0.98214 0.97720 1.06309 1.18851 0.94934 0.84485 0.95910 1.86054 1.45844 1.30247 1.60498 1.23103 0.91318 0.94646 0.93167 1.22787 0.85697 0.94628 0.94370 0.89150 1.23108 0.97864 1.00512 0.97112 1.23270 0.97056 0.99685 0.99279 1.23429 0.97848 0.96258 0.85597 1.88576 1.33190 1.85835 1.20998 1.20390 0.99663 0.96709 1.00474 1.20942 0.97378 0.92730 0.96906 0.93543 0.93301 0.93986 0.92646 0.92420 0.93848 0.94830 0.93430 0.87505 0.95055 0.86928 0.86961 0.92015 0.91413 0.90036 0.89369 0.90146 0.89701 0.89621 0.92178 0.86302 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.91 37.16 0.37 -1.81 16 2 C -0.15 -2.72 6.23 -26.73 -0.17 -2.89 16 3 C 0.15 3.13 5.72 -4.04 -0.02 3.11 16 4 N -0.58 -14.04 2.44 -174.61 -0.43 -14.47 16 5 C -0.25 -6.71 9.48 -15.06 -0.14 -6.85 16 6 H 0.06 1.61 7.93 -52.48 -0.42 1.20 16 7 C 0.01 0.26 4.94 -17.43 -0.09 0.18 16 8 N -0.89 -24.83 11.33 55.49 0.63 -24.20 16 9 Si 0.89 21.36 29.61 -169.99 -5.03 16.33 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.17 4.00 5.46 -5.19 -0.03 3.98 16 14 C -0.10 -2.08 5.44 -104.60 -0.57 -2.65 16 15 C -0.08 -1.53 7.87 -39.61 -0.31 -1.84 16 16 C -0.21 -3.60 9.04 -39.43 -0.36 -3.96 16 17 C 0.10 1.85 6.69 -39.21 -0.26 1.58 16 18 O -0.31 -5.19 10.12 -21.98 -0.22 -5.41 16 19 C 0.05 0.66 4.27 37.16 0.16 0.82 16 20 C 0.08 0.87 3.81 -26.01 -0.10 0.77 16 21 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 22 C -0.15 -1.02 6.54 -24.78 -0.16 -1.18 16 23 C -0.16 -0.94 7.16 -24.48 -0.18 -1.12 16 24 C 0.05 0.38 7.78 38.19 0.30 0.67 16 25 O -0.37 -4.57 11.00 -37.80 -0.42 -4.98 16 26 C -0.15 -2.95 9.99 -39.43 -0.39 -3.34 16 27 C -0.06 -1.27 9.69 -39.61 -0.38 -1.65 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.06 1.09 6.15 -51.92 -0.32 0.77 16 33 H 0.04 0.94 8.08 -51.92 -0.42 0.52 16 34 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 35 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.11 2.79 5.27 -51.93 -0.27 2.52 16 37 H 0.03 0.69 7.80 -51.93 -0.40 0.28 16 38 H 0.11 1.89 8.03 -52.49 -0.42 1.47 16 39 H 0.11 1.57 6.30 -52.48 -0.33 1.24 16 40 H 0.06 0.73 7.66 -51.93 -0.40 0.34 16 41 H 0.07 0.74 7.66 -51.93 -0.40 0.34 16 42 H 0.08 0.50 7.85 -51.93 -0.41 0.10 16 43 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 49 H 0.13 2.78 8.06 -52.49 -0.42 2.35 16 LS Contribution 392.27 15.07 5.91 5.91 Total: -1.00 -30.14 392.27 -10.30 -40.44 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -8.40 Total: 2.57 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -2.34 Total: -16.18 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.20 Total: -38.67 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: -0.64 Total: -10.39 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.14 -10.30 -40.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093791590.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.828 kcal (2) G-P(sol) polarization free energy of solvation -30.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds