Wall clock time and date at job start Tue Mar 31 2020 12:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47754 * 2 1 4 4 N 1.46496 * 109.47801 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99763 * 84.38202 * 4 3 2 6 6 H 1.08003 * 120.00242 * 325.96729 * 5 4 3 7 7 C 1.38809 * 120.00044 * 145.96170 * 5 4 3 8 8 N 1.31627 * 119.99787 * 336.78733 * 7 5 4 9 9 Si 1.86798 * 120.00371 * 156.78414 * 7 5 4 10 10 H 1.48499 * 109.47046 * 60.00129 * 9 7 5 11 11 H 1.48504 * 109.47515 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47136 * 300.00212 * 9 7 5 13 13 C 1.46494 * 120.00475 * 264.38993 * 4 3 2 14 14 C 1.50707 * 109.47331 * 89.99180 * 13 4 3 15 15 C 1.38260 * 119.94746 * 269.73597 * 14 13 4 16 16 C 1.38143 * 120.05629 * 179.72784 * 15 14 13 17 17 C 1.38736 * 119.94265 * 0.55998 * 16 15 14 18 18 O 1.35897 * 120.05762 * 179.68622 * 17 16 15 19 19 C 1.42901 * 116.99784 * 0.02562 * 18 17 16 20 20 C 1.53004 * 109.46832 * 179.97438 * 19 18 17 21 21 H 1.08994 * 109.82672 * 305.57066 * 20 19 18 22 22 C 1.54381 * 109.82905 * 184.58799 * 20 19 18 23 23 C 1.55310 * 102.25513 * 219.13234 * 22 20 19 24 24 C 1.54947 * 100.93766 * 34.13240 * 23 22 20 25 25 O 1.43240 * 109.82924 * 66.45792 * 20 19 18 26 26 C 1.38739 * 119.88825 * 359.70996 * 17 16 15 27 27 C 1.38141 * 119.94038 * 359.97438 * 26 17 16 28 28 H 1.09001 * 109.46500 * 299.99926 * 1 2 3 29 29 H 1.08999 * 109.47124 * 59.99620 * 1 2 3 30 30 H 1.08998 * 109.47068 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46901 * 239.99728 * 2 1 3 32 32 H 1.09007 * 109.47409 * 120.00513 * 2 1 3 33 33 H 1.09007 * 109.47082 * 300.00713 * 3 2 1 34 34 H 1.09001 * 109.46630 * 59.99769 * 3 2 1 35 35 H 0.97000 * 119.99740 * 179.97438 * 8 7 5 36 36 H 1.08994 * 109.47792 * 209.99656 * 13 4 3 37 37 H 1.09001 * 109.47027 * 330.00074 * 13 4 3 38 38 H 1.07997 * 119.97104 * 359.96949 * 15 14 13 39 39 H 1.08004 * 120.03040 * 180.24686 * 16 15 14 40 40 H 1.08999 * 109.47142 * 299.99825 * 19 18 17 41 41 H 1.08996 * 109.47029 * 60.00101 * 19 18 17 42 42 H 1.09006 * 110.84966 * 337.32222 * 22 20 19 43 43 H 1.08999 * 110.84934 * 100.93941 * 22 20 19 44 44 H 1.08997 * 111.12008 * 276.21383 * 23 22 20 45 45 H 1.08995 * 111.15953 * 152.06871 * 23 22 20 46 46 H 1.08999 * 110.30592 * 204.64273 * 24 23 22 47 47 H 1.08997 * 110.39372 * 82.51599 * 24 23 22 48 48 H 1.07998 * 120.02946 * 179.97438 * 26 17 16 49 49 H 1.08002 * 119.96817 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1893 1.3265 -1.1812 6 1 3.7877 0.7220 -1.9810 7 6 5.3989 1.9861 -1.3500 8 7 5.6772 3.0469 -0.6221 9 14 6.6318 1.3684 -2.6101 10 1 6.0157 1.3975 -3.9609 11 1 7.8341 2.2399 -2.5949 12 1 7.0259 -0.0239 -2.2757 13 6 4.2382 1.5663 1.2616 14 6 4.4895 0.1947 1.8333 15 6 3.5700 -0.3726 2.6961 16 6 3.7954 -1.6320 3.2170 17 6 4.9512 -2.3229 2.8829 18 8 5.1783 -3.5594 3.3990 19 6 4.1841 -4.0876 4.2791 20 6 4.6109 -5.4777 4.7549 21 1 4.8197 -6.1147 3.8954 22 6 3.4912 -6.1040 5.6136 23 6 4.2952 -6.8149 6.7362 24 6 5.4899 -5.8424 6.9031 25 8 5.7792 -5.3725 5.5770 26 6 5.8750 -1.7492 2.0213 27 6 5.6417 -0.4922 1.4980 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 1.6768 1.9562 0.8900 35 1 6.5227 3.5076 -0.7399 36 1 5.1905 2.0648 1.0814 37 1 3.6495 2.1518 1.9678 38 1 2.6730 0.1678 2.9599 39 1 3.0750 -2.0764 3.8878 40 1 4.0722 -3.4273 5.1391 41 1 3.2334 -4.1608 3.7510 42 1 2.8436 -5.3322 6.0296 43 1 2.9146 -6.8246 5.0336 44 1 4.6326 -7.8001 6.4141 45 1 3.7126 -6.8828 7.6549 46 1 6.3514 -6.3686 7.3143 47 1 5.2135 -5.0084 7.5482 48 1 6.7757 -2.2848 1.7600 49 1 6.3604 -0.0453 0.8270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093791590.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:14 Heat of formation + Delta-G solvation = -64.335612 kcal Electronic energy + Delta-G solvation = -27103.595149 eV Core-core repulsion = 23416.574149 eV Total energy + Delta-G solvation = -3687.021000 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.20719 -40.27792 -38.82015 -37.26958 -34.65029 -33.27156 -32.92724 -32.14301 -31.63862 -30.81681 -27.40343 -27.24173 -26.45314 -23.77942 -23.70675 -22.69920 -22.11866 -21.84706 -21.56036 -19.07835 -18.63716 -18.10695 -17.28565 -16.91648 -16.58951 -16.36614 -16.21240 -15.87957 -15.63510 -15.31492 -15.11056 -14.82595 -14.53853 -14.29976 -14.24271 -14.06691 -13.42641 -13.34708 -13.28880 -13.09664 -12.84391 -12.68924 -12.65647 -12.47538 -12.35077 -12.25610 -12.14635 -11.95929 -11.88689 -11.85269 -11.75021 -11.66881 -11.53261 -11.22826 -10.53587 -10.48189 -9.82020 -8.89795 -8.57129 -7.81343 -5.38143 0.50946 0.61952 1.43196 1.47337 1.53000 2.21342 2.50618 2.87521 2.91864 3.25657 3.51677 3.73637 3.88114 3.90890 3.95507 4.03146 4.11165 4.17027 4.29604 4.31382 4.32341 4.38614 4.48005 4.53770 4.60406 4.61999 4.71533 4.78946 4.80077 4.84125 4.89535 4.91904 4.95150 4.99877 5.01996 5.19851 5.23319 5.23599 5.27452 5.40775 5.47028 5.54411 5.62981 5.68261 5.76089 5.93622 6.03444 6.08233 6.48194 6.57329 7.18016 7.89431 8.39675 9.13996 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015579 B = 0.003069 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.895584 B = 9120.423881 C =10201.812217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.134 4.134 3 C 0.146 3.854 4 N -0.591 5.591 5 C -0.255 4.255 6 H 0.049 0.951 7 C -0.030 4.030 8 N -0.912 5.912 9 Si 0.941 3.059 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.282 1.282 13 C 0.178 3.822 14 C -0.117 4.117 15 C -0.077 4.077 16 C -0.202 4.202 17 C 0.108 3.892 18 O -0.328 6.328 19 C 0.044 3.956 20 C 0.078 3.922 21 H 0.083 0.917 22 C -0.141 4.141 23 C -0.147 4.147 24 C 0.034 3.966 25 O -0.404 6.404 26 C -0.166 4.166 27 C -0.078 4.078 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.030 0.970 32 H 0.056 0.944 33 H 0.030 0.970 34 H 0.049 0.951 35 H 0.252 0.748 36 H 0.074 0.926 37 H 0.038 0.962 38 H 0.133 0.867 39 H 0.150 0.850 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.105 0.895 44 H 0.084 0.916 45 H 0.107 0.893 46 H 0.092 0.908 47 H 0.064 0.936 48 H 0.124 0.876 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.018 -17.959 15.954 25.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.174 4.174 3 C 0.021 3.979 4 N -0.311 5.311 5 C -0.386 4.386 6 H 0.066 0.934 7 C -0.228 4.228 8 N -0.557 5.557 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.209 1.209 13 C 0.053 3.947 14 C -0.120 4.120 15 C -0.095 4.095 16 C -0.220 4.220 17 C 0.063 3.937 18 O -0.242 6.242 19 C -0.031 4.031 20 C 0.020 3.980 21 H 0.101 0.899 22 C -0.178 4.178 23 C -0.184 4.184 24 C -0.042 4.042 25 O -0.324 6.324 26 C -0.185 4.185 27 C -0.097 4.097 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.048 0.952 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.056 0.944 38 H 0.151 0.849 39 H 0.168 0.832 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.124 0.876 44 H 0.103 0.897 45 H 0.125 0.875 46 H 0.110 0.890 47 H 0.082 0.918 48 H 0.142 0.858 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.547 -17.851 15.833 25.026 hybrid contribution 0.874 0.104 -0.957 1.300 sum -6.672 -17.747 14.876 24.099 Atomic orbital electron populations 1.21654 0.94323 1.01726 1.01890 1.22002 0.96196 0.98661 1.00553 1.21022 0.83397 0.94744 0.98743 1.43947 1.00692 1.84643 1.01809 1.19063 1.03599 1.22171 0.93729 0.93373 1.25551 1.01846 0.95231 1.00131 1.70083 1.23860 1.17611 1.44105 0.85751 0.79335 0.77921 0.80035 1.20244 1.21627 1.20872 1.19858 0.99122 0.90265 0.85483 1.20895 0.94224 0.99952 0.96923 1.20919 0.98329 0.94621 0.95670 1.21323 0.98197 0.96776 1.05744 1.18916 0.94680 0.85109 0.94966 1.86062 1.47769 1.29324 1.61078 1.23498 0.91254 0.95536 0.92788 1.22920 0.86706 0.93616 0.94744 0.89861 1.23134 0.96878 1.01011 0.96814 1.23269 0.96058 0.99097 1.00017 1.23659 0.99347 0.97116 0.84049 1.88537 1.34716 1.86297 1.22871 1.20431 1.00593 0.96259 1.01218 1.20772 0.97482 0.93814 0.97640 0.91876 0.93056 0.92194 0.95096 0.92509 0.95193 0.93279 0.93856 0.90816 0.94356 0.84913 0.83206 0.91329 0.89406 0.88905 0.87613 0.89699 0.87488 0.88990 0.91813 0.85838 0.88221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 9.91 71.98 0.71 -2.99 16 2 C -0.13 -4.80 6.23 30.59 0.19 -4.61 16 3 C 0.15 6.08 5.72 86.38 0.49 6.58 16 4 N -0.59 -29.37 2.44 -706.35 -1.73 -31.09 16 5 C -0.26 -14.09 9.48 84.03 0.80 -13.30 16 6 H 0.05 2.72 7.93 -2.91 -0.02 2.69 16 7 C -0.03 -1.68 4.94 84.86 0.42 -1.27 16 8 N -0.91 -53.04 11.33 21.65 0.25 -52.80 16 9 Si 0.94 45.33 29.61 68.60 2.03 47.37 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 12 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 13 C 0.18 8.48 5.46 85.64 0.47 8.95 16 14 C -0.12 -4.93 5.44 -19.85 -0.11 -5.03 16 15 C -0.08 -2.65 7.87 22.25 0.18 -2.48 16 16 C -0.20 -6.22 9.04 22.37 0.20 -6.01 16 17 C 0.11 3.74 6.69 22.51 0.15 3.89 16 18 O -0.33 -10.36 10.12 -89.94 -0.91 -11.27 16 19 C 0.04 0.96 4.27 71.98 0.31 1.27 16 20 C 0.08 1.46 3.81 31.06 0.12 1.58 16 21 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 22 C -0.14 -1.44 6.54 31.86 0.21 -1.23 16 23 C -0.15 -1.31 7.16 32.05 0.23 -1.08 16 24 C 0.03 0.50 7.78 72.65 0.56 1.07 16 25 O -0.40 -9.56 11.00 -146.53 -1.61 -11.18 16 26 C -0.17 -6.44 9.99 22.37 0.22 -6.22 16 27 C -0.08 -3.38 9.69 22.25 0.22 -3.17 16 28 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 2.03 6.15 -2.38 -0.01 2.01 16 33 H 0.03 1.30 8.08 -2.38 -0.02 1.28 16 34 H 0.05 1.87 7.83 -2.39 -0.02 1.85 16 35 H 0.25 14.25 8.31 -92.71 -0.77 13.47 16 36 H 0.07 4.04 5.27 -2.39 -0.01 4.03 16 37 H 0.04 1.70 7.80 -2.39 -0.02 1.68 16 38 H 0.13 4.03 8.03 -2.91 -0.02 4.01 16 39 H 0.15 3.47 6.30 -2.91 -0.02 3.45 16 40 H 0.07 1.40 7.66 -2.39 -0.02 1.38 16 41 H 0.09 1.56 7.66 -2.39 -0.02 1.54 16 42 H 0.09 0.76 7.85 -2.38 -0.02 0.74 16 43 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.08 0.69 8.14 -2.39 -0.02 0.68 16 45 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 49 H 0.10 4.73 8.06 -2.91 -0.02 4.71 16 Total: -1.00 -67.41 392.27 4.30 -63.11 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.90 Total: 19.92 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: 5.37 Total: -24.05 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: -1.48 Total: -83.89 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -2.52 Total: -22.45 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.37 kcal Total: -67.41 4.30 -63.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093791590.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.230 kcal (2) G-P(sol) polarization free energy of solvation -67.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds