Wall clock time and date at job start Tue Mar 31 2020 12:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47311 * 2 1 4 4 N 1.46501 * 109.47506 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99881 * 269.49238 * 4 3 2 6 6 H 1.08007 * 119.99803 * 325.91288 * 5 4 3 7 7 C 1.38814 * 119.99994 * 145.91086 * 5 4 3 8 8 N 1.31615 * 120.00230 * 336.75607 * 7 5 4 9 9 Si 1.86800 * 119.99893 * 156.75861 * 7 5 4 10 10 H 1.48501 * 109.47183 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47284 * 119.99894 * 9 7 5 12 12 H 1.48503 * 109.47049 * 240.00206 * 9 7 5 13 13 C 1.46495 * 120.00308 * 89.48667 * 4 3 2 14 14 C 1.50701 * 109.47194 * 90.00310 * 13 4 3 15 15 C 1.38264 * 119.94424 * 269.73236 * 14 13 4 16 16 C 1.38148 * 120.05889 * 179.72469 * 15 14 13 17 17 C 1.38736 * 119.93895 * 0.54346 * 16 15 14 18 18 O 1.35895 * 120.05910 * 179.75026 * 17 16 15 19 19 C 1.42908 * 116.99603 * 359.97438 * 18 17 16 20 20 C 1.53005 * 109.47004 * 180.02562 * 19 18 17 21 21 H 1.08992 * 110.27527 * 54.29648 * 20 19 18 22 22 C 1.54942 * 110.30907 * 176.39313 * 20 19 18 23 23 C 1.55414 * 100.89413 * 155.28801 * 22 20 19 24 24 C 1.54382 * 102.30589 * 325.98873 * 23 22 20 25 25 O 1.43238 * 107.59067 * 21.28507 * 24 23 22 26 26 C 1.38741 * 119.88766 * 359.72630 * 17 16 15 27 27 C 1.38137 * 119.94277 * 0.02562 * 26 17 16 28 28 H 1.08994 * 109.47344 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46955 * 300.00689 * 1 2 3 30 30 H 1.09003 * 109.46751 * 60.00466 * 1 2 3 31 31 H 1.09002 * 109.47275 * 119.99517 * 2 1 3 32 32 H 1.09000 * 109.47326 * 239.99994 * 2 1 3 33 33 H 1.09003 * 109.46832 * 299.99484 * 3 2 1 34 34 H 1.09000 * 109.47673 * 59.99751 * 3 2 1 35 35 H 0.97000 * 120.00507 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.47661 * 210.00453 * 13 4 3 37 37 H 1.09003 * 109.47324 * 330.00310 * 13 4 3 38 38 H 1.08003 * 119.97350 * 359.97438 * 15 14 13 39 39 H 1.07997 * 120.03371 * 180.26983 * 16 15 14 40 40 H 1.08993 * 109.47225 * 300.00014 * 19 18 17 41 41 H 1.08997 * 109.46902 * 60.00059 * 19 18 17 42 42 H 1.09000 * 111.12267 * 273.28067 * 22 20 19 43 43 H 1.08997 * 111.12505 * 37.43880 * 22 20 19 44 44 H 1.09000 * 110.88166 * 207.75378 * 23 22 20 45 45 H 1.09001 * 110.93468 * 84.24984 * 23 22 20 46 46 H 1.09000 * 109.82961 * 261.76837 * 24 23 22 47 47 H 1.09001 * 109.82951 * 140.80370 * 24 23 22 48 48 H 1.08000 * 120.02355 * 179.97438 * 26 17 16 49 49 H 1.08003 * 119.97184 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1902 1.4529 1.1850 6 1 3.7897 1.9845 2.0355 7 6 5.3995 0.7801 1.2937 8 7 5.6763 -0.2126 0.4749 9 14 6.6341 1.2834 2.6020 10 1 6.0874 2.4186 3.3879 11 1 6.8935 0.1343 3.5061 12 1 7.9032 1.6980 1.9518 13 6 4.2371 1.4314 -1.2695 14 6 4.4881 2.8483 -1.7171 15 6 3.5679 3.4901 -2.5253 16 6 3.7929 4.7909 -2.9323 17 6 4.9488 5.4495 -2.5387 18 8 5.1750 6.7273 -2.9419 19 6 4.1802 7.3318 -3.7709 20 6 4.6065 8.7588 -4.1212 21 1 5.6022 8.7575 -4.5645 22 6 3.5858 9.4017 -5.0936 23 6 3.8086 10.9110 -4.7978 24 6 4.1377 10.9056 -3.2895 25 8 4.5840 9.5880 -2.9485 26 6 5.8733 4.8013 -1.7323 27 6 5.6410 3.5023 -1.3239 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.6768 1.9563 -0.8901 34 1 1.6767 1.9564 0.8899 35 1 6.5215 -0.6825 0.5505 36 1 5.1895 0.9187 -1.1351 37 1 3.6477 0.9109 -2.0245 38 1 2.6705 2.9753 -2.8354 39 1 3.0718 5.2933 -3.5600 40 1 4.0685 6.7512 -4.6865 41 1 3.2296 7.3566 -3.2382 42 1 3.8262 9.1631 -6.1297 43 1 2.5671 9.1004 -4.8494 44 1 2.9023 11.4836 -4.9951 45 1 4.6459 11.3017 -5.3761 46 1 3.2449 11.1538 -2.7154 47 1 4.9259 11.6288 -3.0804 48 1 6.7740 5.3118 -1.4250 49 1 6.3602 2.9975 -0.6958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093791591.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:19 Heat of formation + Delta-G solvation = -49.841752 kcal Electronic energy + Delta-G solvation = -26733.769677 eV Core-core repulsion = 23047.377178 eV Total energy + Delta-G solvation = -3686.392499 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.07390 -39.24669 -37.33875 -35.67261 -32.88710 -32.54868 -31.55746 -30.80132 -30.31382 -29.32708 -26.18986 -25.53982 -25.01390 -22.49075 -22.21422 -21.93120 -21.11980 -20.62836 -19.68448 -17.82003 -17.28948 -16.73538 -16.33703 -15.64286 -15.37058 -14.87054 -14.67712 -14.46655 -14.22239 -13.95755 -13.67913 -13.55699 -13.43887 -13.17810 -12.84997 -12.66220 -12.27261 -12.16516 -12.10969 -11.78971 -11.62479 -11.51271 -11.29858 -11.20134 -11.00309 -10.93744 -10.75443 -10.57893 -10.39259 -10.35188 -10.16305 -9.86788 -9.85616 -9.73626 -9.62950 -8.49293 -8.35445 -7.44951 -6.60519 -5.78075 -3.29209 1.98394 2.10259 3.28132 3.36971 3.46861 3.50853 3.51303 4.07028 4.38878 4.45089 4.53624 4.54992 4.79696 4.85699 4.94720 5.17349 5.17879 5.28639 5.32721 5.37119 5.38673 5.41881 5.48878 5.58781 5.59540 5.75150 5.77553 5.85950 5.93929 6.04370 6.11206 6.17823 6.32045 6.33362 6.50704 6.55973 6.65067 6.71438 6.76429 6.80398 6.86652 7.08679 7.10440 7.28924 7.41433 7.47354 7.75220 7.84649 7.89341 8.51994 9.19270 9.83341 10.39922 11.22299 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014492 B = 0.002897 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.602432 B = 9662.693015 C =10820.617615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.149 3.851 4 N -0.577 5.577 5 C -0.248 4.248 6 H 0.061 0.939 7 C 0.009 3.991 8 N -0.885 5.885 9 Si 0.888 3.112 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.286 1.286 13 C 0.174 3.826 14 C -0.101 4.101 15 C -0.086 4.086 16 C -0.213 4.213 17 C 0.103 3.897 18 O -0.314 6.314 19 C 0.065 3.935 20 C 0.083 3.917 21 H 0.081 0.919 22 C -0.149 4.149 23 C -0.155 4.155 24 C 0.047 3.953 25 O -0.369 6.369 26 C -0.153 4.153 27 C -0.060 4.060 28 H 0.042 0.958 29 H 0.046 0.954 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.032 0.968 34 H 0.041 0.959 35 H 0.254 0.746 36 H 0.108 0.892 37 H 0.031 0.969 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.069 0.931 47 H 0.068 0.932 48 H 0.120 0.880 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.260 16.341 -12.621 21.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.180 4.180 3 C 0.023 3.977 4 N -0.296 5.296 5 C -0.378 4.378 6 H 0.079 0.921 7 C -0.191 4.191 8 N -0.528 5.528 9 Si 0.718 3.282 10 H -0.200 1.200 11 H -0.217 1.217 12 H -0.213 1.213 13 C 0.048 3.952 14 C -0.104 4.104 15 C -0.105 4.105 16 C -0.232 4.232 17 C 0.058 3.942 18 O -0.228 6.228 19 C -0.011 4.011 20 C 0.026 3.974 21 H 0.099 0.901 22 C -0.187 4.187 23 C -0.192 4.192 24 C -0.030 4.030 25 O -0.289 6.289 26 C -0.172 4.172 27 C -0.079 4.079 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.125 0.875 37 H 0.049 0.951 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.107 0.893 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.097 0.903 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.138 0.862 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.914 16.276 -12.349 21.013 hybrid contribution 0.348 0.332 0.380 0.613 sum -4.566 16.608 -11.969 20.975 Atomic orbital electron populations 1.21757 0.97858 1.00265 1.00636 1.22089 0.92949 1.00879 1.02087 1.20923 0.85236 0.93342 0.98189 1.43820 0.99314 1.84537 1.01890 1.19099 1.02929 1.25242 0.90504 0.92145 1.25018 1.00661 0.95279 0.98125 1.69986 1.23639 1.19329 1.39867 0.86445 0.81810 0.78305 0.81664 1.20049 1.21739 1.21278 1.20023 1.00702 0.88366 0.86130 1.21165 0.93168 1.00875 0.95207 1.20823 0.98608 0.93513 0.97538 1.21029 0.98137 0.97147 1.06876 1.18844 0.95039 0.83280 0.96999 1.86051 1.45564 1.25571 1.65600 1.22821 0.92000 0.91784 0.94531 1.23006 0.99294 0.89193 0.85916 0.90117 1.23259 1.00208 0.94941 1.00263 1.23131 1.02924 0.96597 0.96573 1.23153 0.99546 0.85551 0.94722 1.88566 1.87896 1.21150 1.31246 1.20396 0.99764 0.95556 1.01481 1.20948 0.97375 0.92717 0.96874 0.93904 0.93454 0.93734 0.91871 0.93062 0.94985 0.94087 0.93592 0.87507 0.95051 0.86884 0.86849 0.91068 0.91602 0.89328 0.89860 0.89796 0.90339 0.91244 0.91338 0.86247 0.85559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.91 37.16 0.37 -1.92 16 2 C -0.14 -2.75 6.26 -26.73 -0.17 -2.92 16 3 C 0.15 3.15 5.67 -4.04 -0.02 3.13 16 4 N -0.58 -14.08 2.43 -174.61 -0.43 -14.50 16 5 C -0.25 -6.66 9.48 -15.06 -0.14 -6.80 16 6 H 0.06 1.66 7.93 -52.48 -0.42 1.24 16 7 C 0.01 0.24 4.94 -17.43 -0.09 0.15 16 8 N -0.89 -24.69 11.34 55.49 0.63 -24.07 16 9 Si 0.89 21.38 29.61 -169.99 -5.03 16.35 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 13 C 0.17 4.02 5.42 -5.20 -0.03 3.99 16 14 C -0.10 -2.11 5.46 -104.60 -0.57 -2.68 16 15 C -0.09 -1.57 9.69 -39.60 -0.38 -1.96 16 16 C -0.21 -3.57 9.04 -39.43 -0.36 -3.93 16 17 C 0.10 1.83 6.69 -39.21 -0.26 1.57 16 18 O -0.31 -5.16 10.14 -20.14 -0.20 -5.36 16 19 C 0.06 0.78 4.45 37.16 0.17 0.95 16 20 C 0.08 0.87 3.72 -25.70 -0.10 0.78 16 21 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 22 C -0.15 -1.02 6.58 -24.42 -0.16 -1.19 16 23 C -0.15 -0.94 7.02 -24.73 -0.17 -1.12 16 24 C 0.05 0.40 7.80 37.88 0.30 0.70 16 25 O -0.37 -4.71 11.04 -35.96 -0.40 -5.10 16 26 C -0.15 -2.91 9.99 -39.43 -0.39 -3.30 16 27 C -0.06 -1.25 9.69 -39.61 -0.38 -1.64 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.03 0.62 8.08 -51.93 -0.42 0.20 16 34 H 0.04 0.87 8.04 -51.93 -0.42 0.45 16 35 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 36 H 0.11 2.78 5.28 -51.93 -0.27 2.51 16 37 H 0.03 0.69 8.01 -51.93 -0.42 0.27 16 38 H 0.11 1.88 8.06 -52.48 -0.42 1.46 16 39 H 0.11 1.56 6.30 -52.49 -0.33 1.23 16 40 H 0.07 0.72 7.66 -51.93 -0.40 0.33 16 41 H 0.07 0.80 7.66 -51.93 -0.40 0.40 16 42 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.54 8.06 -51.93 -0.42 0.12 16 44 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.12 2.09 8.06 -52.49 -0.42 1.67 16 49 H 0.13 2.76 8.06 -52.48 -0.42 2.34 16 LS Contribution 396.75 15.07 5.98 5.98 Total: -1.00 -30.21 396.75 -10.39 -40.61 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -8.54 Total: 2.28 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -2.40 Total: -16.18 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.20 Total: -38.57 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: -0.60 Total: -10.46 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.21 -10.39 -40.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093791591.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.235 kcal (2) G-P(sol) polarization free energy of solvation -30.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds