Wall clock time and date at job start Tue Mar 31 2020 12:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47076 * 2 1 4 4 N 1.46497 * 109.47180 * 180.02562 * 3 2 1 5 5 C 1.37103 * 119.99818 * 262.98629 * 4 3 2 6 6 H 1.08003 * 119.99481 * 142.20665 * 5 4 3 7 7 C 1.38946 * 120.00199 * 322.20669 * 5 4 3 8 8 N 1.31407 * 119.99990 * 157.13511 * 7 5 4 9 9 Si 1.86803 * 119.99987 * 337.13678 * 7 5 4 10 10 H 1.48493 * 109.47052 * 95.20291 * 9 7 5 11 11 H 1.48504 * 109.46975 * 215.20621 * 9 7 5 12 12 H 1.48500 * 109.46929 * 335.20459 * 9 7 5 13 13 C 1.34777 * 120.00249 * 82.98487 * 4 3 2 14 14 O 1.21290 * 120.00125 * 179.97438 * 13 4 3 15 15 C 1.50706 * 119.99667 * 0.02562 * 13 4 3 16 16 C 1.52998 * 109.46766 * 180.02562 * 15 13 4 17 17 H 1.09003 * 109.47282 * 304.99472 * 16 15 13 18 18 C 1.53002 * 109.47411 * 64.99844 * 16 15 13 19 19 C 1.53001 * 109.46700 * 184.99759 * 16 15 13 20 20 C 1.50704 * 109.46885 * 174.99744 * 19 16 15 21 21 C 1.38171 * 120.02855 * 264.72333 * 20 19 16 22 22 C 1.38242 * 120.05310 * 179.77108 * 21 20 19 23 23 C 1.38282 * 120.11641 * 0.50824 * 22 21 20 24 24 C 1.38128 * 120.05246 * 359.74617 * 23 22 21 25 25 C 1.38708 * 120.02880 * 85.00250 * 20 19 16 26 26 O 1.35898 * 120.05400 * 359.97438 * 25 20 19 27 27 C 1.42900 * 116.99906 * 180.02562 * 26 25 20 28 28 H 1.09007 * 109.46952 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46901 * 299.99059 * 1 2 3 30 30 H 1.08994 * 109.47462 * 59.99428 * 1 2 3 31 31 H 1.09006 * 109.46492 * 240.00644 * 2 1 3 32 32 H 1.08994 * 109.47462 * 120.00572 * 2 1 3 33 33 H 1.08998 * 109.47172 * 60.00779 * 3 2 1 34 34 H 1.09001 * 109.47522 * 300.00965 * 3 2 1 35 35 H 0.97004 * 119.99910 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.46986 * 299.99536 * 15 13 4 37 37 H 1.08991 * 109.47030 * 59.99555 * 15 13 4 38 38 H 1.09001 * 109.46749 * 299.99877 * 18 16 15 39 39 H 1.08990 * 109.46748 * 60.00040 * 18 16 15 40 40 H 1.08998 * 109.46742 * 179.97438 * 18 16 15 41 41 H 1.08996 * 109.47431 * 294.99589 * 19 16 15 42 42 H 1.09002 * 109.46974 * 55.00084 * 19 16 15 43 43 H 1.08001 * 119.96854 * 0.02562 * 21 20 19 44 44 H 1.08002 * 119.94295 * 180.25284 * 22 21 20 45 45 H 1.07996 * 119.97847 * 179.77069 * 23 22 21 46 46 H 1.08000 * 120.03044 * 180.02562 * 24 23 22 47 47 H 1.08999 * 109.47151 * 300.00374 * 27 26 25 48 48 H 1.09003 * 109.47282 * 60.00502 * 27 26 25 49 49 H 1.09005 * 109.47070 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1909 1.5873 1.1776 6 1 5.1011 1.0304 1.3444 7 6 3.7152 2.4506 2.1569 8 7 4.0688 2.2802 3.4110 9 14 2.5730 3.8533 1.6908 10 1 1.1633 3.4296 1.8866 11 1 2.8597 5.0310 2.5487 12 1 2.7881 4.2143 0.2665 13 6 4.1784 1.3001 -1.1594 14 8 5.3913 1.3006 -1.1599 15 6 3.4243 1.1415 -2.4545 16 6 4.4181 0.9989 -3.6090 17 1 5.1029 1.8470 -3.6059 18 6 5.2121 -0.2982 -3.4414 19 6 3.6568 0.9630 -4.9357 20 6 4.6393 0.9464 -6.0783 21 6 4.9962 2.1273 -6.7005 22 6 5.9010 2.1132 -7.7456 23 6 6.4431 0.9168 -8.1780 24 6 6.0855 -0.2671 -7.5627 25 6 5.1816 -0.2551 -6.5101 26 8 4.8281 -1.4185 -5.9031 27 6 5.4266 -2.6172 -6.3999 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6765 1.9564 -0.8899 35 1 3.7369 2.8831 4.0947 36 1 2.7974 0.2513 -2.4032 37 1 2.7979 2.0180 -2.6199 38 1 5.7544 -0.2726 -2.4962 39 1 4.5273 -1.1462 -3.4446 40 1 5.9197 -0.3999 -4.2641 41 1 3.0381 0.0665 -4.9754 42 1 3.0226 1.8460 -5.0146 43 1 4.5711 3.0626 -6.3674 44 1 6.1819 3.0378 -8.2280 45 1 7.1469 0.9079 -8.9970 46 1 6.5094 -1.2012 -7.9004 47 1 5.1668 -2.7445 -7.4509 48 1 6.5099 -2.5515 -6.2988 49 1 5.0591 -3.4703 -5.8294 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107227296.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:10 Heat of formation + Delta-G solvation = -55.168862 kcal Electronic energy + Delta-G solvation = -27730.666066 eV Core-core repulsion = 24044.042566 eV Total energy + Delta-G solvation = -3686.623500 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.44122 -38.97490 -37.48161 -36.00530 -34.98692 -32.83453 -31.49054 -31.39064 -30.15542 -27.71051 -27.51506 -26.27512 -25.81906 -24.30632 -22.21060 -21.85658 -21.35093 -19.90267 -18.49237 -18.02368 -16.91151 -16.38830 -16.13943 -15.89590 -15.69663 -15.29978 -14.87699 -14.51813 -14.26152 -13.95609 -13.76568 -13.54087 -13.28966 -13.08408 -12.89873 -12.56592 -12.40041 -12.34234 -12.02548 -11.94313 -11.69157 -11.62297 -11.46175 -11.30418 -11.24889 -10.98494 -10.86960 -10.74887 -10.49888 -10.48961 -10.31906 -10.13548 -9.93787 -9.76161 -8.97072 -8.88271 -8.33701 -8.12463 -7.63992 -6.33869 -3.88643 1.26840 1.39884 3.07019 3.23670 3.25391 3.30810 3.69967 3.85518 4.20544 4.48521 4.68047 4.73515 4.92520 4.97525 5.02110 5.03264 5.21412 5.25402 5.35989 5.37569 5.39705 5.43513 5.52522 5.54509 5.60869 5.72956 5.80095 5.85901 5.92229 6.00571 6.08079 6.13670 6.15849 6.21814 6.27573 6.29823 6.33883 6.35477 6.44421 6.53888 6.59736 6.62284 6.74561 6.83374 6.88719 7.04631 7.35397 7.63325 8.37935 8.61211 9.06804 9.41290 9.90026 10.78729 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017878 B = 0.003283 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.804097 B = 8525.888242 C = 8933.769720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.093 3.907 4 N -0.471 5.471 5 C -0.312 4.312 6 H 0.103 0.897 7 C 0.060 3.940 8 N -0.866 5.866 9 Si 0.871 3.129 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.264 1.264 13 C 0.468 3.532 14 O -0.561 6.561 15 C -0.135 4.135 16 C -0.063 4.063 17 H 0.073 0.927 18 C -0.140 4.140 19 C -0.070 4.070 20 C -0.101 4.101 21 C -0.082 4.082 22 C -0.157 4.157 23 C -0.091 4.091 24 C -0.210 4.210 25 C 0.133 3.867 26 O -0.304 6.304 27 C 0.026 3.974 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.272 0.728 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.128 0.872 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.124 0.876 47 H 0.051 0.949 48 H 0.054 0.946 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.727 -5.373 -21.285 22.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C -0.031 4.031 4 N -0.192 5.192 5 C -0.440 4.440 6 H 0.121 0.879 7 C -0.145 4.145 8 N -0.503 5.503 9 Si 0.698 3.302 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.189 1.189 13 C 0.257 3.743 14 O -0.442 6.442 15 C -0.175 4.175 16 C -0.082 4.082 17 H 0.092 0.908 18 C -0.197 4.197 19 C -0.108 4.108 20 C -0.101 4.101 21 C -0.100 4.100 22 C -0.175 4.175 23 C -0.109 4.109 24 C -0.229 4.229 25 C 0.088 3.912 26 O -0.217 6.217 27 C -0.069 4.069 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.146 0.854 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.142 0.858 47 H 0.069 0.931 48 H 0.072 0.928 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.236 -5.350 -20.894 21.810 hybrid contribution -0.503 0.713 -0.255 0.909 sum -3.739 -4.638 -21.149 21.972 Atomic orbital electron populations 1.21729 0.96209 1.01230 1.01507 1.21922 0.94918 0.97976 1.02820 1.21845 0.83314 0.96527 1.01394 1.43792 1.03589 1.65366 1.06483 1.19020 1.10297 1.24795 0.89845 0.87946 1.25338 0.97219 0.97182 0.94745 1.69777 1.44346 1.36432 0.99710 0.87043 0.80251 0.83204 0.79673 1.20252 1.21449 1.18860 1.20287 0.88183 0.81348 0.84454 1.90513 1.13981 1.53348 1.86387 1.21776 0.98909 1.02544 0.94253 1.20783 0.96323 1.00083 0.91014 0.90829 1.21907 0.99760 0.95556 1.02450 1.20600 0.95843 1.02505 0.91822 1.19307 1.01190 0.90419 0.99230 1.20943 0.96863 0.97069 0.95092 1.21012 0.99588 0.97952 0.98992 1.20863 0.98879 0.92081 0.99062 1.21196 1.02614 0.99485 0.99626 1.18803 0.94325 0.86213 0.91899 1.86228 1.65657 1.13122 1.56644 1.23028 0.98443 0.85772 0.99696 0.92916 0.92795 0.93068 0.92140 0.90850 0.90813 0.92384 0.91762 0.90117 0.90560 0.90773 0.93603 0.93622 0.90735 0.91375 0.85432 0.86148 0.86212 0.85775 0.93066 0.92777 0.88323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.14 -2.36 6.13 -26.73 -0.16 -2.52 16 3 C 0.09 1.88 3.74 -4.04 -0.02 1.86 16 4 N -0.47 -11.48 2.18 -114.81 -0.25 -11.73 16 5 C -0.31 -8.96 9.35 -14.93 -0.14 -9.10 16 6 H 0.10 3.31 7.92 -52.48 -0.42 2.89 16 7 C 0.06 1.69 5.24 -17.47 -0.09 1.60 16 8 N -0.87 -25.38 13.96 55.50 0.77 -24.61 16 9 Si 0.87 20.86 25.12 -169.99 -4.27 16.59 16 10 H -0.28 -6.12 6.67 56.52 0.38 -5.74 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.26 -6.30 7.11 56.52 0.40 -5.90 16 13 C 0.47 10.94 7.29 -10.98 -0.08 10.86 16 14 O -0.56 -15.09 13.84 5.55 0.08 -15.01 16 15 C -0.13 -2.35 3.79 -27.88 -0.11 -2.45 16 16 C -0.06 -1.03 2.03 -90.62 -0.18 -1.22 16 17 H 0.07 1.35 7.95 -51.93 -0.41 0.94 16 18 C -0.14 -2.39 7.51 37.16 0.28 -2.11 16 19 C -0.07 -0.93 4.67 -27.88 -0.13 -1.06 16 20 C -0.10 -1.32 4.86 -104.47 -0.51 -1.82 16 21 C -0.08 -0.96 9.68 -39.60 -0.38 -1.34 16 22 C -0.16 -1.66 10.04 -39.56 -0.40 -2.06 16 23 C -0.09 -0.92 10.04 -39.61 -0.40 -1.32 16 24 C -0.21 -2.29 9.04 -39.43 -0.36 -2.65 16 25 C 0.13 1.67 5.37 -39.22 -0.21 1.46 16 26 O -0.30 -3.69 7.11 -19.42 -0.14 -3.83 16 27 C 0.03 0.22 9.81 101.05 0.99 1.21 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.97 6.39 -51.93 -0.33 0.64 16 32 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.07 1.60 3.72 -51.93 -0.19 1.41 16 34 H 0.06 1.02 6.74 -51.93 -0.35 0.67 16 35 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.08 1.27 6.35 -51.93 -0.33 0.94 16 37 H 0.08 1.20 7.42 -51.93 -0.39 0.82 16 38 H 0.07 1.53 5.95 -51.93 -0.31 1.22 16 39 H 0.04 0.73 7.77 -51.93 -0.40 0.33 16 40 H 0.04 0.74 5.55 -51.93 -0.29 0.46 16 41 H 0.07 0.97 7.69 -51.93 -0.40 0.57 16 42 H 0.07 0.80 8.05 -51.93 -0.42 0.38 16 43 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 44 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 45 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 46 H 0.12 1.08 6.30 -52.49 -0.33 0.75 16 47 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 48 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 49 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 377.92 15.07 5.70 5.70 Total: -1.00 -32.91 377.92 -7.54 -40.45 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -7.91 Total: 4.79 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -1.52 Total: -12.34 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.52 Total: -36.34 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.06 Total: -18.84 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.27 Total: 16.59 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.91 -7.54 -40.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107227296.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.722 kcal (2) G-P(sol) polarization free energy of solvation -32.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds