Wall clock time and date at job start Tue Mar 31 2020 12:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47076 * 2 1 4 4 N 1.46497 * 109.47180 * 180.02562 * 3 2 1 5 5 C 1.37103 * 119.99818 * 262.98629 * 4 3 2 6 6 H 1.08003 * 119.99481 * 142.20665 * 5 4 3 7 7 C 1.38946 * 120.00199 * 322.20669 * 5 4 3 8 8 N 1.31407 * 119.99990 * 157.13511 * 7 5 4 9 9 Si 1.86803 * 119.99987 * 337.13678 * 7 5 4 10 10 H 1.48493 * 109.47052 * 95.20291 * 9 7 5 11 11 H 1.48504 * 109.46975 * 215.20621 * 9 7 5 12 12 H 1.48500 * 109.46929 * 335.20459 * 9 7 5 13 13 C 1.34777 * 120.00249 * 82.98487 * 4 3 2 14 14 O 1.21290 * 120.00125 * 179.97438 * 13 4 3 15 15 C 1.50706 * 119.99667 * 0.02562 * 13 4 3 16 16 C 1.52998 * 109.46766 * 180.02562 * 15 13 4 17 17 H 1.09003 * 109.47282 * 304.99472 * 16 15 13 18 18 C 1.53002 * 109.47411 * 64.99844 * 16 15 13 19 19 C 1.53001 * 109.46700 * 184.99759 * 16 15 13 20 20 C 1.50704 * 109.46885 * 174.99744 * 19 16 15 21 21 C 1.38171 * 120.02855 * 264.72333 * 20 19 16 22 22 C 1.38242 * 120.05310 * 179.77108 * 21 20 19 23 23 C 1.38282 * 120.11641 * 0.50824 * 22 21 20 24 24 C 1.38128 * 120.05246 * 359.74617 * 23 22 21 25 25 C 1.38708 * 120.02880 * 85.00250 * 20 19 16 26 26 O 1.35898 * 120.05400 * 359.97438 * 25 20 19 27 27 C 1.42900 * 116.99906 * 180.02562 * 26 25 20 28 28 H 1.09007 * 109.46952 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46901 * 299.99059 * 1 2 3 30 30 H 1.08994 * 109.47462 * 59.99428 * 1 2 3 31 31 H 1.09006 * 109.46492 * 240.00644 * 2 1 3 32 32 H 1.08994 * 109.47462 * 120.00572 * 2 1 3 33 33 H 1.08998 * 109.47172 * 60.00779 * 3 2 1 34 34 H 1.09001 * 109.47522 * 300.00965 * 3 2 1 35 35 H 0.97004 * 119.99910 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.46986 * 299.99536 * 15 13 4 37 37 H 1.08991 * 109.47030 * 59.99555 * 15 13 4 38 38 H 1.09001 * 109.46749 * 299.99877 * 18 16 15 39 39 H 1.08990 * 109.46748 * 60.00040 * 18 16 15 40 40 H 1.08998 * 109.46742 * 179.97438 * 18 16 15 41 41 H 1.08996 * 109.47431 * 294.99589 * 19 16 15 42 42 H 1.09002 * 109.46974 * 55.00084 * 19 16 15 43 43 H 1.08001 * 119.96854 * 0.02562 * 21 20 19 44 44 H 1.08002 * 119.94295 * 180.25284 * 22 21 20 45 45 H 1.07996 * 119.97847 * 179.77069 * 23 22 21 46 46 H 1.08000 * 120.03044 * 180.02562 * 24 23 22 47 47 H 1.08999 * 109.47151 * 300.00374 * 27 26 25 48 48 H 1.09003 * 109.47282 * 60.00502 * 27 26 25 49 49 H 1.09005 * 109.47070 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1909 1.5873 1.1776 6 1 5.1011 1.0304 1.3444 7 6 3.7152 2.4506 2.1569 8 7 4.0688 2.2802 3.4110 9 14 2.5730 3.8533 1.6908 10 1 1.1633 3.4296 1.8866 11 1 2.8597 5.0310 2.5487 12 1 2.7881 4.2143 0.2665 13 6 4.1784 1.3001 -1.1594 14 8 5.3913 1.3006 -1.1599 15 6 3.4243 1.1415 -2.4545 16 6 4.4181 0.9989 -3.6090 17 1 5.1029 1.8470 -3.6059 18 6 5.2121 -0.2982 -3.4414 19 6 3.6568 0.9630 -4.9357 20 6 4.6393 0.9464 -6.0783 21 6 4.9962 2.1273 -6.7005 22 6 5.9010 2.1132 -7.7456 23 6 6.4431 0.9168 -8.1780 24 6 6.0855 -0.2671 -7.5627 25 6 5.1816 -0.2551 -6.5101 26 8 4.8281 -1.4185 -5.9031 27 6 5.4266 -2.6172 -6.3999 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6765 1.9564 -0.8899 35 1 3.7369 2.8831 4.0947 36 1 2.7974 0.2513 -2.4032 37 1 2.7979 2.0180 -2.6199 38 1 5.7544 -0.2726 -2.4962 39 1 4.5273 -1.1462 -3.4446 40 1 5.9197 -0.3999 -4.2641 41 1 3.0381 0.0665 -4.9754 42 1 3.0226 1.8460 -5.0146 43 1 4.5711 3.0626 -6.3674 44 1 6.1819 3.0378 -8.2280 45 1 7.1469 0.9079 -8.9970 46 1 6.5094 -1.2012 -7.9004 47 1 5.1668 -2.7445 -7.4509 48 1 6.5099 -2.5515 -6.2988 49 1 5.0591 -3.4703 -5.8294 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107227296.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:09 Heat of formation + Delta-G solvation = -74.306382 kcal Electronic energy + Delta-G solvation = -27731.495931 eV Core-core repulsion = 24044.042566 eV Total energy + Delta-G solvation = -3687.453365 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.33663 -40.69192 -38.31145 -37.54236 -36.47573 -34.66821 -33.25487 -32.45724 -30.96017 -29.22753 -28.31916 -27.42548 -27.21309 -26.14160 -23.12429 -22.84612 -22.69187 -21.21793 -20.18937 -18.92123 -18.81577 -17.85638 -17.38760 -17.10368 -16.80489 -16.46352 -16.27002 -15.74133 -15.54527 -15.25159 -15.11125 -14.65993 -14.60726 -14.52031 -14.27532 -14.14514 -13.70785 -13.43003 -13.31855 -13.17456 -12.97981 -12.79857 -12.72169 -12.47991 -12.44157 -12.23061 -12.15609 -12.09760 -11.87449 -11.83637 -11.70458 -11.57479 -11.37522 -11.30857 -10.97946 -10.22953 -9.71017 -9.63435 -8.98400 -8.50499 -6.10325 0.43903 0.57378 1.18387 1.31007 1.43307 2.02887 2.18455 2.49348 2.72184 2.87988 3.00971 3.80657 3.90188 3.92926 4.01182 4.07307 4.09521 4.22039 4.31755 4.36621 4.42528 4.44258 4.48300 4.51901 4.60304 4.65016 4.67749 4.73070 4.75961 4.77675 4.80274 4.87679 4.99335 5.03444 5.09570 5.16480 5.21698 5.28420 5.32576 5.47460 5.49420 5.50615 5.58139 5.60031 5.62891 5.70927 5.95729 6.07045 6.56079 6.62002 7.00092 7.37116 7.96755 8.67472 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017878 B = 0.003283 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.804097 B = 8525.888242 C = 8933.769720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.133 4.133 3 C 0.086 3.914 4 N -0.482 5.482 5 C -0.331 4.331 6 H 0.039 0.961 7 C 0.012 3.988 8 N -0.913 5.913 9 Si 0.944 3.056 10 H -0.238 1.238 11 H -0.289 1.289 12 H -0.258 1.258 13 C 0.459 3.541 14 O -0.609 6.609 15 C -0.122 4.122 16 C -0.058 4.058 17 H 0.047 0.953 18 C -0.127 4.127 19 C -0.057 4.057 20 C -0.127 4.127 21 C -0.092 4.092 22 C -0.165 4.165 23 C -0.093 4.093 24 C -0.218 4.218 25 C 0.117 3.883 26 O -0.323 6.323 27 C 0.018 3.982 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.278 0.722 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.029 0.971 39 H 0.056 0.944 40 H 0.049 0.951 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.145 0.855 46 H 0.143 0.857 47 H 0.067 0.933 48 H 0.056 0.944 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.757 -4.651 -24.496 25.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C -0.037 4.037 4 N -0.204 5.204 5 C -0.459 4.459 6 H 0.057 0.943 7 C -0.189 4.189 8 N -0.551 5.551 9 Si 0.766 3.234 10 H -0.163 1.163 11 H -0.216 1.216 12 H -0.182 1.182 13 C 0.250 3.750 14 O -0.494 6.494 15 C -0.161 4.161 16 C -0.077 4.077 17 H 0.066 0.934 18 C -0.185 4.185 19 C -0.095 4.095 20 C -0.128 4.128 21 C -0.110 4.110 22 C -0.183 4.183 23 C -0.111 4.111 24 C -0.237 4.237 25 C 0.072 3.928 26 O -0.237 6.237 27 C -0.076 4.076 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.048 0.952 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.156 0.844 44 H 0.159 0.841 45 H 0.163 0.837 46 H 0.161 0.839 47 H 0.086 0.914 48 H 0.074 0.926 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.301 -4.653 -24.115 25.355 hybrid contribution 0.612 0.370 0.727 1.020 sum -5.689 -4.283 -23.388 24.448 Atomic orbital electron populations 1.21698 0.92811 1.02862 1.02612 1.21861 0.97734 0.95702 1.01833 1.22122 0.80294 0.98806 1.02454 1.43945 1.05514 1.65610 1.05318 1.18609 1.09479 1.25402 0.92411 0.94349 1.26126 0.99481 0.99277 0.94057 1.69894 1.46517 1.37647 1.01025 0.85903 0.79677 0.78469 0.79314 1.16304 1.21585 1.18170 1.21410 0.88056 0.79493 0.86080 1.90494 1.16573 1.54954 1.87367 1.21784 0.98847 1.04946 0.90569 1.20716 0.95959 0.98279 0.92758 0.93418 1.21754 0.99833 0.96793 1.00075 1.20447 0.95669 1.03690 0.89652 1.19437 1.02218 0.91225 0.99926 1.21194 0.97199 0.97199 0.95430 1.21338 0.99128 0.99116 0.98712 1.21249 0.98749 0.91709 0.99354 1.21493 1.02254 1.00728 0.99228 1.19030 0.94878 0.86365 0.92539 1.86171 1.66241 1.13873 1.57371 1.23253 0.98573 0.84854 1.00948 0.91145 0.93215 0.90397 0.90949 0.94187 0.92194 0.88502 0.91198 0.87621 0.87526 0.95189 0.92481 0.93202 0.90167 0.89408 0.84373 0.84075 0.83676 0.83938 0.91405 0.92582 0.87099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 9.91 71.98 0.71 -2.60 16 2 C -0.13 -4.29 6.13 30.59 0.19 -4.10 16 3 C 0.09 3.26 3.74 86.38 0.32 3.59 16 4 N -0.48 -23.85 2.18 -635.54 -1.39 -25.24 16 5 C -0.33 -20.08 9.35 84.04 0.79 -19.29 16 6 H 0.04 2.74 7.92 -2.91 -0.02 2.72 16 7 C 0.01 0.71 5.24 84.93 0.45 1.15 16 8 N -0.91 -55.78 13.96 21.66 0.30 -55.48 16 9 Si 0.94 42.78 25.12 68.60 1.72 44.50 16 10 H -0.24 -9.39 6.67 99.48 0.66 -8.72 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 12 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 13 C 0.46 21.77 7.29 87.66 0.64 22.41 16 14 O -0.61 -34.75 13.84 -3.06 -0.04 -34.79 16 15 C -0.12 -4.00 3.79 29.85 0.11 -3.89 16 16 C -0.06 -1.85 2.03 -10.79 -0.02 -1.88 16 17 H 0.05 1.76 7.95 -2.39 -0.02 1.75 16 18 C -0.13 -4.43 7.51 71.98 0.54 -3.89 16 19 C -0.06 -1.38 4.67 29.85 0.14 -1.24 16 20 C -0.13 -3.12 4.86 -19.77 -0.10 -3.22 16 21 C -0.09 -2.01 9.68 22.25 0.22 -1.79 16 22 C -0.16 -3.12 10.04 22.28 0.22 -2.90 16 23 C -0.09 -1.67 10.04 22.25 0.22 -1.45 16 24 C -0.22 -4.34 9.04 22.37 0.20 -4.13 16 25 C 0.12 2.79 5.37 22.51 0.12 2.91 16 26 O -0.32 -7.42 7.11 -92.40 -0.66 -8.08 16 27 C 0.02 0.28 9.81 113.37 1.11 1.39 16 28 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.07 2.14 6.39 -2.38 -0.02 2.12 16 32 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.06 2.45 3.72 -2.39 -0.01 2.44 16 34 H 0.10 2.94 6.74 -2.39 -0.02 2.92 16 35 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 36 H 0.11 2.98 6.35 -2.39 -0.02 2.97 16 37 H 0.11 2.91 7.42 -2.39 -0.02 2.89 16 38 H 0.03 1.29 5.95 -2.39 -0.01 1.27 16 39 H 0.06 1.80 7.77 -2.39 -0.02 1.78 16 40 H 0.05 1.66 5.55 -2.39 -0.01 1.64 16 41 H 0.08 1.84 7.69 -2.39 -0.02 1.82 16 42 H 0.09 1.75 8.05 -2.39 -0.02 1.73 16 43 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 44 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 45 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 46 H 0.14 2.15 6.30 -2.91 -0.02 2.14 16 47 H 0.07 0.78 7.66 -2.39 -0.02 0.76 16 48 H 0.06 0.81 7.66 -2.39 -0.02 0.79 16 49 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 Total: -1.00 -78.80 377.92 6.69 -72.11 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: 0.89 Total: 25.91 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: 5.87 Total: -18.93 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -1.09 Total: -80.72 kcal Atomic # 8 Polarization: -42.17 SS G_CDS: -0.70 Total: -42.87 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.72 Total: 44.50 kcal Total: -78.80 6.69 -72.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107227296.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.194 kcal (2) G-P(sol) polarization free energy of solvation -78.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds