Wall clock time and date at job start Tue Mar 31 2020 12:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52999 * 109.47037 * 2 1 4 4 N 1.46500 * 109.46941 * 180.02562 * 3 2 1 5 5 C 1.37099 * 119.99515 * 262.79767 * 4 3 2 6 6 H 1.07997 * 119.99811 * 142.16982 * 5 4 3 7 7 C 1.38944 * 120.00246 * 322.16616 * 5 4 3 8 8 N 1.31420 * 120.00066 * 157.39046 * 7 5 4 9 9 Si 1.86806 * 120.00068 * 337.38974 * 7 5 4 10 10 H 1.48504 * 109.46960 * 95.21380 * 9 7 5 11 11 H 1.48498 * 109.47032 * 215.20834 * 9 7 5 12 12 H 1.48492 * 109.47139 * 335.21049 * 9 7 5 13 13 C 1.34767 * 120.00132 * 82.79788 * 4 3 2 14 14 O 1.21300 * 119.99808 * 179.97438 * 13 4 3 15 15 C 1.50699 * 120.00078 * 0.27884 * 13 4 3 16 16 C 1.53003 * 109.47130 * 179.72287 * 15 13 4 17 17 H 1.09002 * 109.47118 * 54.99956 * 16 15 13 18 18 C 1.52996 * 109.47492 * 294.99782 * 16 15 13 19 19 C 1.53002 * 109.47283 * 174.99521 * 16 15 13 20 20 C 1.50694 * 109.47213 * 185.00205 * 19 16 15 21 21 C 1.38166 * 120.02743 * 264.72430 * 20 19 16 22 22 C 1.38240 * 120.05653 * 179.77304 * 21 20 19 23 23 C 1.38285 * 120.11081 * 0.50427 * 22 21 20 24 24 C 1.38121 * 120.05674 * 359.74591 * 23 22 21 25 25 C 1.38712 * 120.03335 * 85.00202 * 20 19 16 26 26 O 1.35906 * 120.05143 * 359.97438 * 25 20 19 27 27 C 1.42896 * 116.99805 * 179.97438 * 26 25 20 28 28 H 1.09001 * 109.46698 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47250 * 299.99903 * 1 2 3 30 30 H 1.09004 * 109.46520 * 60.00128 * 1 2 3 31 31 H 1.08999 * 109.47250 * 240.00097 * 2 1 3 32 32 H 1.08996 * 109.46768 * 120.00113 * 2 1 3 33 33 H 1.08999 * 109.47021 * 59.99957 * 3 2 1 34 34 H 1.09001 * 109.47215 * 300.00119 * 3 2 1 35 35 H 0.97001 * 119.99726 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.46822 * 299.72259 * 15 13 4 37 37 H 1.08992 * 109.47399 * 59.72141 * 15 13 4 38 38 H 1.09002 * 109.47081 * 300.00196 * 18 16 15 39 39 H 1.09005 * 109.46951 * 59.99595 * 18 16 15 40 40 H 1.08993 * 109.47803 * 180.02562 * 18 16 15 41 41 H 1.09003 * 109.46935 * 305.00140 * 19 16 15 42 42 H 1.09003 * 109.46960 * 64.99603 * 19 16 15 43 43 H 1.08009 * 119.97417 * 0.02562 * 21 20 19 44 44 H 1.08005 * 119.94554 * 180.25551 * 22 21 20 45 45 H 1.08006 * 119.96962 * 179.76985 * 23 22 21 46 46 H 1.07999 * 120.02761 * 179.97438 * 24 23 22 47 47 H 1.08995 * 109.47439 * 300.00044 * 27 26 25 48 48 H 1.08998 * 109.46610 * 60.00746 * 27 26 25 49 49 H 1.09001 * 109.47031 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1910 1.5911 1.1771 6 1 5.1008 1.0343 1.3461 7 6 3.7157 2.4582 2.1532 8 7 4.0730 2.2952 3.4074 9 14 2.5687 3.8557 1.6829 10 1 1.1606 3.4296 1.8849 11 1 2.8548 5.0386 2.5339 12 1 2.7790 4.2099 0.2563 13 6 4.1784 1.2963 -1.1588 14 8 5.3914 1.2968 -1.1593 15 6 3.4245 1.1392 -2.4541 16 6 4.4183 0.9991 -3.6090 17 1 5.1025 0.1763 -3.4018 18 6 5.2130 2.2979 -3.7584 19 6 3.6570 0.7151 -4.9054 20 6 4.6394 0.4557 -6.0183 21 6 5.0178 1.4838 -6.8601 22 6 5.9225 1.2476 -7.8783 23 6 6.4431 -0.0201 -8.0635 24 6 6.0641 -1.0525 -7.2279 25 6 5.1601 -0.8168 -6.2021 26 8 4.7856 -1.8309 -5.3785 27 6 5.3616 -3.1148 -5.6270 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8901 31 1 1.8935 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 3.7415 2.9008 4.0887 36 1 2.7978 0.2488 -2.4040 37 1 2.7978 2.0157 -2.6184 38 1 4.5289 3.1208 -3.9656 39 1 5.7554 2.5002 -2.8347 40 1 5.9207 2.1984 -4.5813 41 1 3.0222 -0.1605 -4.7696 42 1 3.0387 1.5761 -5.1598 43 1 4.6096 2.4739 -6.7201 44 1 6.2203 2.0535 -8.5328 45 1 7.1470 -0.2029 -8.8621 46 1 6.4706 -2.0424 -7.3732 47 1 5.0992 -3.4423 -6.6329 48 1 6.4459 -3.0499 -5.5372 49 1 4.9795 -3.8314 -4.8999 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107227299.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:14 Heat of formation + Delta-G solvation = -57.277121 kcal Electronic energy + Delta-G solvation = -27664.442414 eV Core-core repulsion = 23977.727493 eV Total energy + Delta-G solvation = -3686.714921 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.37315 -38.99329 -37.54375 -35.99920 -34.98646 -32.83384 -31.49011 -31.37371 -30.18293 -27.83045 -27.31688 -26.43784 -25.81793 -24.28466 -22.18192 -21.84854 -21.35257 -20.00479 -18.44753 -17.99866 -16.91540 -16.29053 -16.16037 -15.89722 -15.71126 -15.33016 -14.69619 -14.55465 -14.32331 -13.96732 -13.83169 -13.61006 -13.33689 -13.17876 -12.86438 -12.55863 -12.34166 -12.25662 -12.02305 -12.01246 -11.79230 -11.75738 -11.36094 -11.22892 -11.18638 -11.05811 -10.90599 -10.82166 -10.55289 -10.49022 -10.27475 -10.22936 -9.94146 -9.75121 -8.99407 -8.86486 -8.32366 -8.13050 -7.64604 -6.33681 -3.88779 1.26780 1.39484 3.07010 3.23413 3.25389 3.30820 3.69745 3.85443 4.20530 4.48586 4.68067 4.73520 4.93068 4.97285 5.02871 5.03325 5.20102 5.25250 5.36975 5.37847 5.39356 5.44437 5.51940 5.53262 5.60568 5.71298 5.81579 5.87763 5.88523 6.00548 6.06628 6.11737 6.14839 6.17175 6.22925 6.26806 6.33263 6.35700 6.43767 6.49688 6.54651 6.62339 6.72615 6.83217 6.87012 7.00626 7.35060 7.63434 8.37938 8.61236 9.06739 9.41323 9.89969 10.78906 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017607 B = 0.003331 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.876918 B = 8403.883938 C = 8863.125953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.093 3.907 4 N -0.471 5.471 5 C -0.312 4.312 6 H 0.103 0.897 7 C 0.060 3.940 8 N -0.866 5.866 9 Si 0.871 3.129 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.264 1.264 13 C 0.469 3.531 14 O -0.561 6.561 15 C -0.134 4.134 16 C -0.062 4.062 17 H 0.077 0.923 18 C -0.151 4.151 19 C -0.070 4.070 20 C -0.099 4.099 21 C -0.079 4.079 22 C -0.158 4.158 23 C -0.091 4.091 24 C -0.209 4.209 25 C 0.129 3.871 26 O -0.309 6.309 27 C 0.028 3.972 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.272 0.728 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.041 0.959 39 H 0.080 0.920 40 H 0.046 0.954 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.128 0.872 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.125 0.875 47 H 0.052 0.948 48 H 0.054 0.946 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.741 -5.943 -20.844 21.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 C -0.031 4.031 4 N -0.192 5.192 5 C -0.439 4.439 6 H 0.120 0.880 7 C -0.145 4.145 8 N -0.503 5.503 9 Si 0.699 3.301 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.188 1.188 13 C 0.258 3.742 14 O -0.443 6.443 15 C -0.174 4.174 16 C -0.081 4.081 17 H 0.096 0.904 18 C -0.208 4.208 19 C -0.107 4.107 20 C -0.100 4.100 21 C -0.097 4.097 22 C -0.176 4.176 23 C -0.109 4.109 24 C -0.228 4.228 25 C 0.084 3.916 26 O -0.222 6.222 27 C -0.068 4.068 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.060 0.940 39 H 0.099 0.901 40 H 0.065 0.935 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.146 0.854 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.143 0.857 47 H 0.070 0.930 48 H 0.073 0.927 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.251 -5.879 -20.449 21.524 hybrid contribution -0.505 0.615 -0.203 0.821 sum -3.756 -5.264 -20.652 21.641 Atomic orbital electron populations 1.21730 0.96198 1.01233 1.01510 1.21926 0.94933 0.97977 1.02825 1.21848 0.83324 0.96525 1.01400 1.43785 1.03586 1.65309 1.06542 1.19018 1.10301 1.24617 0.90001 0.87954 1.25341 0.97232 0.97172 0.94750 1.69779 1.44347 1.36390 0.99797 0.87040 0.80273 0.83134 0.79701 1.20261 1.21463 1.18832 1.20278 0.88178 0.81335 0.84442 1.90513 1.13982 1.53455 1.86314 1.21768 0.98902 1.02579 0.94190 1.20740 0.96413 0.99545 0.91371 0.90410 1.21979 0.99823 0.95942 1.03095 1.20580 0.95850 1.01865 0.92421 1.19291 1.01221 0.90442 0.99018 1.20931 0.96699 0.98172 0.93868 1.21016 0.99773 0.97057 0.99780 1.20861 0.98891 0.92701 0.98419 1.21191 1.02463 1.00538 0.98609 1.18887 0.94351 0.88241 0.90151 1.86131 1.65707 1.17376 1.52954 1.23042 0.98757 0.82948 1.02005 0.92911 0.92793 0.93062 0.92131 0.90854 0.90806 0.92377 0.91766 0.90174 0.90480 0.94010 0.90084 0.93466 0.90807 0.91312 0.85441 0.86154 0.86195 0.85750 0.92979 0.92715 0.88217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.16 0.37 -1.67 16 2 C -0.14 -2.37 6.13 -26.73 -0.16 -2.53 16 3 C 0.09 1.88 3.73 -4.04 -0.02 1.86 16 4 N -0.47 -11.50 2.18 -114.82 -0.25 -11.75 16 5 C -0.31 -8.96 9.35 -14.93 -0.14 -9.10 16 6 H 0.10 3.31 7.92 -52.49 -0.42 2.90 16 7 C 0.06 1.69 5.25 -17.47 -0.09 1.60 16 8 N -0.87 -25.41 13.96 55.50 0.77 -24.64 16 9 Si 0.87 20.87 25.10 -169.99 -4.27 16.61 16 10 H -0.28 -6.13 6.68 56.52 0.38 -5.75 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.26 -6.29 7.11 56.52 0.40 -5.89 16 13 C 0.47 10.97 7.28 -10.99 -0.08 10.89 16 14 O -0.56 -15.11 13.84 5.54 0.08 -15.03 16 15 C -0.13 -2.35 3.79 -27.88 -0.11 -2.46 16 16 C -0.06 -1.02 2.03 -90.62 -0.18 -1.20 16 17 H 0.08 1.48 7.96 -51.93 -0.41 1.06 16 18 C -0.15 -2.55 8.58 37.16 0.32 -2.23 16 19 C -0.07 -0.93 4.55 -27.88 -0.13 -1.05 16 20 C -0.10 -1.30 4.57 -104.48 -0.48 -1.77 16 21 C -0.08 -0.91 8.37 -39.61 -0.33 -1.24 16 22 C -0.16 -1.64 10.04 -39.56 -0.40 -2.04 16 23 C -0.09 -0.92 10.04 -39.61 -0.40 -1.32 16 24 C -0.21 -2.32 9.04 -39.44 -0.36 -2.67 16 25 C 0.13 1.68 6.66 -39.22 -0.26 1.42 16 26 O -0.31 -4.02 9.63 -19.44 -0.19 -4.20 16 27 C 0.03 0.25 9.81 101.05 0.99 1.24 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.97 6.38 -51.93 -0.33 0.64 16 32 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.07 1.60 3.72 -51.93 -0.19 1.41 16 34 H 0.06 1.02 6.73 -51.93 -0.35 0.67 16 35 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.08 1.27 6.35 -51.93 -0.33 0.94 16 37 H 0.08 1.23 7.42 -51.93 -0.39 0.85 16 38 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.08 1.67 5.95 -51.93 -0.31 1.36 16 40 H 0.05 0.73 6.53 -51.93 -0.34 0.39 16 41 H 0.07 0.97 7.69 -51.93 -0.40 0.57 16 42 H 0.07 0.81 8.05 -51.93 -0.42 0.39 16 43 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 44 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 45 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 46 H 0.12 1.10 6.30 -52.49 -0.33 0.77 16 47 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 48 H 0.05 0.45 7.66 -51.93 -0.40 0.06 16 49 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 382.38 15.07 5.76 5.76 Total: -1.00 -33.02 382.38 -7.51 -40.53 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -7.97 Total: 5.00 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: -1.45 Total: -12.28 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.52 Total: -36.39 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.11 Total: -19.24 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.27 Total: 16.61 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.02 -7.51 -40.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107227299.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.745 kcal (2) G-P(sol) polarization free energy of solvation -33.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds