Wall clock time and date at job start Tue Mar 31 2020 12:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52999 * 109.47037 * 2 1 4 4 N 1.46500 * 109.46941 * 180.02562 * 3 2 1 5 5 C 1.37099 * 119.99515 * 262.79767 * 4 3 2 6 6 H 1.07997 * 119.99811 * 142.16982 * 5 4 3 7 7 C 1.38944 * 120.00246 * 322.16616 * 5 4 3 8 8 N 1.31420 * 120.00066 * 157.39046 * 7 5 4 9 9 Si 1.86806 * 120.00068 * 337.38974 * 7 5 4 10 10 H 1.48504 * 109.46960 * 95.21380 * 9 7 5 11 11 H 1.48498 * 109.47032 * 215.20834 * 9 7 5 12 12 H 1.48492 * 109.47139 * 335.21049 * 9 7 5 13 13 C 1.34767 * 120.00132 * 82.79788 * 4 3 2 14 14 O 1.21300 * 119.99808 * 179.97438 * 13 4 3 15 15 C 1.50699 * 120.00078 * 0.27884 * 13 4 3 16 16 C 1.53003 * 109.47130 * 179.72287 * 15 13 4 17 17 H 1.09002 * 109.47118 * 54.99956 * 16 15 13 18 18 C 1.52996 * 109.47492 * 294.99782 * 16 15 13 19 19 C 1.53002 * 109.47283 * 174.99521 * 16 15 13 20 20 C 1.50694 * 109.47213 * 185.00205 * 19 16 15 21 21 C 1.38166 * 120.02743 * 264.72430 * 20 19 16 22 22 C 1.38240 * 120.05653 * 179.77304 * 21 20 19 23 23 C 1.38285 * 120.11081 * 0.50427 * 22 21 20 24 24 C 1.38121 * 120.05674 * 359.74591 * 23 22 21 25 25 C 1.38712 * 120.03335 * 85.00202 * 20 19 16 26 26 O 1.35906 * 120.05143 * 359.97438 * 25 20 19 27 27 C 1.42896 * 116.99805 * 179.97438 * 26 25 20 28 28 H 1.09001 * 109.46698 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47250 * 299.99903 * 1 2 3 30 30 H 1.09004 * 109.46520 * 60.00128 * 1 2 3 31 31 H 1.08999 * 109.47250 * 240.00097 * 2 1 3 32 32 H 1.08996 * 109.46768 * 120.00113 * 2 1 3 33 33 H 1.08999 * 109.47021 * 59.99957 * 3 2 1 34 34 H 1.09001 * 109.47215 * 300.00119 * 3 2 1 35 35 H 0.97001 * 119.99726 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.46822 * 299.72259 * 15 13 4 37 37 H 1.08992 * 109.47399 * 59.72141 * 15 13 4 38 38 H 1.09002 * 109.47081 * 300.00196 * 18 16 15 39 39 H 1.09005 * 109.46951 * 59.99595 * 18 16 15 40 40 H 1.08993 * 109.47803 * 180.02562 * 18 16 15 41 41 H 1.09003 * 109.46935 * 305.00140 * 19 16 15 42 42 H 1.09003 * 109.46960 * 64.99603 * 19 16 15 43 43 H 1.08009 * 119.97417 * 0.02562 * 21 20 19 44 44 H 1.08005 * 119.94554 * 180.25551 * 22 21 20 45 45 H 1.08006 * 119.96962 * 179.76985 * 23 22 21 46 46 H 1.07999 * 120.02761 * 179.97438 * 24 23 22 47 47 H 1.08995 * 109.47439 * 300.00044 * 27 26 25 48 48 H 1.08998 * 109.46610 * 60.00746 * 27 26 25 49 49 H 1.09001 * 109.47031 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1910 1.5911 1.1771 6 1 5.1008 1.0343 1.3461 7 6 3.7157 2.4582 2.1532 8 7 4.0730 2.2952 3.4074 9 14 2.5687 3.8557 1.6829 10 1 1.1606 3.4296 1.8849 11 1 2.8548 5.0386 2.5339 12 1 2.7790 4.2099 0.2563 13 6 4.1784 1.2963 -1.1588 14 8 5.3914 1.2968 -1.1593 15 6 3.4245 1.1392 -2.4541 16 6 4.4183 0.9991 -3.6090 17 1 5.1025 0.1763 -3.4018 18 6 5.2130 2.2979 -3.7584 19 6 3.6570 0.7151 -4.9054 20 6 4.6394 0.4557 -6.0183 21 6 5.0178 1.4838 -6.8601 22 6 5.9225 1.2476 -7.8783 23 6 6.4431 -0.0201 -8.0635 24 6 6.0641 -1.0525 -7.2279 25 6 5.1601 -0.8168 -6.2021 26 8 4.7856 -1.8309 -5.3785 27 6 5.3616 -3.1148 -5.6270 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8901 31 1 1.8935 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 3.7415 2.9008 4.0887 36 1 2.7978 0.2488 -2.4040 37 1 2.7978 2.0157 -2.6184 38 1 4.5289 3.1208 -3.9656 39 1 5.7554 2.5002 -2.8347 40 1 5.9207 2.1984 -4.5813 41 1 3.0222 -0.1605 -4.7696 42 1 3.0387 1.5761 -5.1598 43 1 4.6096 2.4739 -6.7201 44 1 6.2203 2.0535 -8.5328 45 1 7.1470 -0.2029 -8.8621 46 1 6.4706 -2.0424 -7.3732 47 1 5.0992 -3.4423 -6.6329 48 1 6.4459 -3.0499 -5.5372 49 1 4.9795 -3.8314 -4.8999 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107227299.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:12 Heat of formation + Delta-G solvation = -76.817516 kcal Electronic energy + Delta-G solvation = -27665.289749 eV Core-core repulsion = 23977.727493 eV Total energy + Delta-G solvation = -3687.562256 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.27968 -40.71012 -38.43230 -37.52386 -36.46653 -34.67267 -33.25730 -32.44922 -30.98684 -29.28661 -28.19325 -27.56008 -27.26353 -26.12271 -23.02118 -22.89403 -22.72598 -21.30689 -20.15994 -18.92121 -18.81559 -17.85975 -17.40133 -17.13872 -16.66780 -16.47400 -16.23185 -15.88459 -15.42330 -15.25435 -15.15165 -14.97487 -14.66224 -14.49088 -14.32465 -13.98310 -13.71968 -13.34563 -13.31604 -13.28071 -13.00449 -12.82748 -12.76106 -12.49905 -12.46680 -12.19213 -12.13720 -12.03057 -11.98278 -11.87715 -11.78193 -11.56696 -11.41033 -11.31265 -11.00237 -10.21277 -9.69746 -9.64318 -9.00808 -8.50625 -6.10887 0.43967 0.56354 1.18242 1.30836 1.43273 2.02347 2.18309 2.46566 2.72052 2.87506 3.00468 3.79918 3.89601 3.92635 4.00407 4.04557 4.11500 4.21560 4.30168 4.32682 4.38103 4.41179 4.50286 4.52360 4.58213 4.64000 4.66101 4.71891 4.72817 4.76171 4.80697 4.84157 4.97519 5.01906 5.04617 5.15059 5.22043 5.27202 5.31724 5.41540 5.48873 5.52539 5.58429 5.60166 5.62795 5.70713 5.95935 6.06386 6.53335 6.61648 6.99631 7.36605 7.96257 8.67337 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017607 B = 0.003331 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.876918 B = 8403.883938 C = 8863.125953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.133 4.133 3 C 0.086 3.914 4 N -0.482 5.482 5 C -0.331 4.331 6 H 0.038 0.962 7 C 0.012 3.988 8 N -0.913 5.913 9 Si 0.944 3.056 10 H -0.239 1.239 11 H -0.289 1.289 12 H -0.257 1.257 13 C 0.459 3.541 14 O -0.610 6.610 15 C -0.122 4.122 16 C -0.055 4.055 17 H 0.041 0.959 18 C -0.145 4.145 19 C -0.057 4.057 20 C -0.124 4.124 21 C -0.085 4.085 22 C -0.163 4.163 23 C -0.093 4.093 24 C -0.218 4.218 25 C 0.107 3.893 26 O -0.334 6.334 27 C 0.020 3.980 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.039 0.961 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.278 0.722 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.065 0.935 39 H 0.035 0.965 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.143 0.857 44 H 0.144 0.856 45 H 0.146 0.854 46 H 0.141 0.859 47 H 0.070 0.930 48 H 0.056 0.944 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.787 -4.920 -24.197 25.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C -0.037 4.037 4 N -0.204 5.204 5 C -0.459 4.459 6 H 0.056 0.944 7 C -0.190 4.190 8 N -0.551 5.551 9 Si 0.767 3.233 10 H -0.163 1.163 11 H -0.216 1.216 12 H -0.181 1.181 13 C 0.250 3.750 14 O -0.494 6.494 15 C -0.161 4.161 16 C -0.074 4.074 17 H 0.059 0.941 18 C -0.202 4.202 19 C -0.094 4.094 20 C -0.125 4.125 21 C -0.103 4.103 22 C -0.181 4.181 23 C -0.111 4.111 24 C -0.237 4.237 25 C 0.062 3.938 26 O -0.248 6.248 27 C -0.074 4.074 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.083 0.917 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.110 0.890 43 H 0.160 0.840 44 H 0.162 0.838 45 H 0.164 0.836 46 H 0.159 0.841 47 H 0.089 0.911 48 H 0.074 0.926 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.330 -4.882 -23.812 25.118 hybrid contribution 0.616 0.180 0.829 1.049 sum -5.714 -4.702 -22.982 24.144 Atomic orbital electron populations 1.21699 0.92767 1.02867 1.02633 1.21867 0.97781 0.95724 1.01805 1.22122 0.80300 0.98781 1.02463 1.43939 1.05513 1.65558 1.05370 1.18602 1.09482 1.25241 0.92563 0.94410 1.26135 0.99519 0.99251 0.94059 1.69897 1.46517 1.37598 1.01121 0.85897 0.79639 0.78410 0.79385 1.16323 1.21585 1.18064 1.21399 0.88051 0.79494 0.86066 1.90494 1.16574 1.55051 1.87291 1.21778 0.98859 1.04904 0.90588 1.20636 0.95898 0.97952 0.92904 0.94053 1.21877 1.00219 0.97034 1.01037 1.20431 0.95669 1.02845 0.90483 1.19431 1.02177 0.91128 0.99753 1.21183 0.96847 0.98442 0.93837 1.21370 0.99146 0.97898 0.99688 1.21253 0.98780 0.92421 0.98600 1.21475 1.02102 1.01812 0.98263 1.19193 0.95234 0.88517 0.90884 1.86078 1.66458 1.18596 1.53659 1.23257 0.98868 0.81786 1.03498 0.91150 0.93172 0.90388 0.91022 0.94180 0.92155 0.88501 0.91195 0.87835 0.87422 0.91651 0.94587 0.92567 0.90686 0.88966 0.83973 0.83803 0.83618 0.84114 0.91133 0.92574 0.87194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 9.91 71.99 0.71 -2.62 16 2 C -0.13 -4.34 6.13 30.60 0.19 -4.15 16 3 C 0.09 3.28 3.73 86.38 0.32 3.60 16 4 N -0.48 -23.94 2.18 -635.55 -1.39 -25.33 16 5 C -0.33 -20.12 9.35 84.04 0.79 -19.33 16 6 H 0.04 2.71 7.92 -2.91 -0.02 2.69 16 7 C 0.01 0.69 5.25 84.92 0.45 1.14 16 8 N -0.91 -55.89 13.96 21.66 0.30 -55.59 16 9 Si 0.94 42.79 25.10 68.60 1.72 44.52 16 10 H -0.24 -9.40 6.68 99.48 0.66 -8.74 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 13 C 0.46 21.91 7.28 87.66 0.64 22.55 16 14 O -0.61 -34.91 13.84 -3.09 -0.04 -34.95 16 15 C -0.12 -4.04 3.79 29.85 0.11 -3.92 16 16 C -0.05 -1.76 2.03 -10.79 -0.02 -1.78 16 17 H 0.04 1.62 7.96 -2.39 -0.02 1.60 16 18 C -0.14 -4.78 8.58 71.98 0.62 -4.17 16 19 C -0.06 -1.39 4.55 29.85 0.14 -1.25 16 20 C -0.12 -3.05 4.57 -19.77 -0.09 -3.14 16 21 C -0.09 -1.76 8.37 22.25 0.19 -1.58 16 22 C -0.16 -2.95 10.04 22.28 0.22 -2.73 16 23 C -0.09 -1.66 10.04 22.25 0.22 -1.44 16 24 C -0.22 -4.49 9.04 22.36 0.20 -4.29 16 25 C 0.11 2.69 6.66 22.50 0.15 2.84 16 26 O -0.33 -8.60 9.63 -92.49 -0.89 -9.49 16 27 C 0.02 0.35 9.81 113.37 1.11 1.46 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.07 2.15 6.38 -2.39 -0.02 2.13 16 32 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.06 2.47 3.72 -2.39 -0.01 2.46 16 34 H 0.10 2.95 6.73 -2.39 -0.02 2.94 16 35 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 36 H 0.10 2.98 6.35 -2.39 -0.02 2.96 16 37 H 0.11 2.97 7.42 -2.39 -0.02 2.95 16 38 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.04 1.51 5.95 -2.38 -0.01 1.50 16 40 H 0.06 1.71 6.53 -2.39 -0.02 1.70 16 41 H 0.07 1.79 7.69 -2.39 -0.02 1.77 16 42 H 0.09 1.79 8.05 -2.39 -0.02 1.77 16 43 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 44 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 45 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 46 H 0.14 2.27 6.30 -2.91 -0.02 2.25 16 47 H 0.07 0.92 7.66 -2.39 -0.02 0.90 16 48 H 0.06 0.92 7.66 -2.39 -0.02 0.90 16 49 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -79.66 382.38 6.53 -73.13 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: 0.88 Total: 26.53 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: 5.95 Total: -18.81 kcal Atomic # 7 Polarization: -79.83 SS G_CDS: -1.09 Total: -80.92 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: -0.93 Total: -44.45 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.72 Total: 44.52 kcal Total: -79.66 6.53 -73.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107227299.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.688 kcal (2) G-P(sol) polarization free energy of solvation -79.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds