Wall clock time and date at job start Tue Mar 31 2020 12:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50693 * 120.00113 * 2 1 4 4 C 1.50701 * 109.47194 * 125.00026 * 3 2 1 5 5 C 1.38162 * 120.02658 * 265.01851 * 4 3 2 6 6 C 1.38246 * 120.05319 * 179.97438 * 5 4 3 7 7 C 1.38290 * 120.11284 * 359.74772 * 6 5 4 8 8 C 1.38119 * 120.05415 * 0.50540 * 7 6 5 9 9 C 1.38713 * 120.02653 * 85.00057 * 4 3 2 10 10 O 1.35891 * 120.05768 * 359.97438 * 9 4 3 11 11 C 1.42898 * 117.00211 * 180.02562 * 10 9 4 12 12 C 1.52999 * 109.47644 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.47487 * 54.99683 * 12 11 10 14 14 O 1.42906 * 109.46540 * 295.00146 * 12 11 10 15 15 C 1.52995 * 109.47539 * 175.00226 * 12 11 10 16 16 N 1.46506 * 109.47230 * 181.69530 * 15 12 11 17 17 C 1.36941 * 119.99300 * 93.20591 * 16 15 12 18 18 H 1.07993 * 120.00227 * 351.10216 * 17 16 15 19 19 C 1.38811 * 119.99546 * 171.09800 * 17 16 15 20 20 N 1.31620 * 120.00161 * 1.63349 * 19 17 16 21 21 Si 1.86798 * 120.00126 * 181.63446 * 19 17 16 22 22 H 1.48497 * 109.47144 * 59.99860 * 21 19 17 23 23 H 1.48496 * 109.47458 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46971 * 299.99955 * 21 19 17 25 25 C 1.46493 * 120.00418 * 273.20971 * 16 15 12 26 26 C 1.52995 * 109.47005 * 262.71426 * 25 16 15 27 27 C 1.53008 * 109.47300 * 185.83363 * 26 25 16 28 28 H 1.08001 * 119.99671 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.00428 * 180.02562 * 1 2 3 30 30 H 1.08006 * 119.99458 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47367 * 4.99721 * 3 2 1 32 32 H 1.09004 * 109.46913 * 244.99758 * 3 2 1 33 33 H 1.08000 * 119.97773 * 0.02562 * 5 4 3 34 34 H 1.08008 * 119.93988 * 180.02562 * 6 5 4 35 35 H 1.08005 * 119.96969 * 180.27683 * 7 6 5 36 36 H 1.07997 * 120.02843 * 179.76580 * 8 7 6 37 37 H 1.09005 * 109.47551 * 300.00469 * 11 10 9 38 38 H 1.09004 * 109.47175 * 60.00732 * 11 10 9 39 39 H 0.96693 * 114.00230 * 299.99234 * 14 12 11 40 40 H 1.09001 * 109.47030 * 301.69982 * 15 12 11 41 41 H 1.09008 * 109.46947 * 61.69884 * 15 12 11 42 42 H 0.97003 * 120.00456 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.47326 * 22.70648 * 25 16 15 44 44 H 1.08993 * 109.47544 * 142.70609 * 25 16 15 45 45 H 1.09001 * 109.47103 * 305.82926 * 26 25 16 46 46 H 1.08996 * 109.47770 * 65.83059 * 26 25 16 47 47 H 1.09001 * 109.46686 * 299.99818 * 27 26 25 48 48 H 1.08996 * 109.46957 * 59.99198 * 27 26 25 49 49 H 1.08995 * 109.47047 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0204 1.3326 1.1639 5 6 2.6459 1.9281 2.3530 6 6 3.5231 1.9532 3.4212 7 6 4.7753 1.3781 3.3043 8 6 5.1565 0.7862 2.1160 9 6 4.2779 0.7598 1.0423 10 8 4.6484 0.1727 -0.1260 11 6 5.9577 -0.3972 -0.1790 12 6 6.1932 -1.0063 -1.5627 13 1 6.0171 -0.2500 -2.3275 14 8 5.2960 -2.1011 -1.7600 15 6 7.6361 -1.5053 -1.6615 16 7 7.8733 -2.0519 -2.9999 17 6 8.3907 -1.2524 -3.9840 18 1 8.4895 -0.1896 -3.8200 19 6 8.7880 -1.8082 -5.1923 20 7 8.6378 -3.0985 -5.4042 21 14 9.5359 -0.7249 -6.5177 22 1 10.7691 -0.0834 -5.9951 23 1 9.8727 -1.5538 -7.7028 24 1 8.5600 0.3238 -6.9089 25 6 7.5570 -3.4534 -3.2855 26 6 8.8279 -4.2971 -3.1683 27 6 8.5297 -5.7323 -3.6069 28 1 -0.5400 0.9354 0.0004 29 1 -0.5401 -0.9353 0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6213 1.4025 -0.9314 33 1 1.6667 2.3736 2.4484 34 1 3.2282 2.4188 4.3500 35 1 5.4571 1.3951 4.1417 36 1 6.1359 0.3406 2.0239 37 1 6.6998 0.3793 0.0068 38 1 6.0468 -1.1742 0.5802 39 1 5.3966 -2.8134 -1.1139 40 1 8.3204 -0.6763 -1.4810 41 1 7.8033 -2.2833 -0.9164 42 1 8.9151 -3.4869 -6.2488 43 1 6.8160 -3.8116 -2.5708 44 1 7.1572 -3.5371 -4.2960 45 1 9.6039 -3.8758 -3.8073 46 1 9.1700 -4.2972 -2.1334 47 1 7.7536 -6.1536 -2.9678 48 1 8.1876 -5.7322 -4.6418 49 1 9.4352 -6.3332 -3.5238 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118004415.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:56 Heat of formation + Delta-G solvation = -18.947308 kcal Electronic energy + Delta-G solvation = -27068.394540 eV Core-core repulsion = 23383.341725 eV Total energy + Delta-G solvation = -3685.052816 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.31948 -38.09045 -36.83676 -35.30461 -35.18609 -31.94821 -31.43499 -31.28373 -30.29182 -29.17041 -26.41676 -25.70124 -25.42062 -22.85491 -21.86502 -21.49681 -20.82931 -19.81566 -19.71989 -17.99469 -16.98114 -16.37318 -16.11291 -15.98934 -15.30597 -14.97761 -14.83006 -14.55858 -14.36064 -13.86995 -13.61707 -13.58263 -13.25147 -13.13260 -12.82598 -12.74433 -12.41746 -12.02274 -11.95538 -11.59717 -11.30306 -11.23596 -11.17649 -10.98716 -10.94567 -10.83110 -10.75454 -10.38769 -10.30995 -10.04461 -9.82411 -9.66654 -9.63171 -9.35946 -9.23983 -8.94462 -8.23990 -8.14224 -6.76452 -5.57082 -3.09176 1.20702 1.37875 2.30005 3.23399 3.40345 3.45596 3.45716 3.66910 4.48474 4.67765 4.70156 4.85053 4.88760 5.02862 5.05127 5.14547 5.19914 5.27047 5.28236 5.41751 5.44962 5.55913 5.58774 5.72071 5.76015 5.90755 5.93050 5.95317 5.99987 6.26053 6.34075 6.35468 6.35697 6.42952 6.46174 6.60282 6.64935 6.72176 6.74063 6.77622 6.86963 7.06129 7.38193 7.47224 7.48375 7.65995 8.02504 8.19465 8.22283 8.52356 9.31942 9.90068 10.31926 11.32564 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015132 B = 0.002829 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.904805 B = 9895.705535 C = 9914.204966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.130 4.130 3 C -0.047 4.047 4 C -0.114 4.114 5 C -0.079 4.079 6 C -0.164 4.164 7 C -0.084 4.084 8 C -0.211 4.211 9 C 0.139 3.861 10 O -0.298 6.298 11 C 0.027 3.973 12 C 0.086 3.914 13 H 0.104 0.896 14 O -0.542 6.542 15 C 0.129 3.871 16 N -0.591 5.591 17 C -0.245 4.245 18 H 0.071 0.929 19 C -0.006 4.006 20 N -0.902 5.902 21 Si 0.909 3.091 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.180 3.820 26 C -0.115 4.115 27 C -0.132 4.132 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.125 0.875 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.128 0.872 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.360 0.640 40 H 0.056 0.944 41 H 0.040 0.960 42 H 0.249 0.751 43 H 0.001 0.999 44 H 0.100 0.900 45 H 0.093 0.907 46 H 0.002 0.998 47 H 0.026 0.974 48 H 0.056 0.944 49 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.878 5.945 15.870 19.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.148 4.148 3 C -0.084 4.084 4 C -0.115 4.115 5 C -0.097 4.097 6 C -0.182 4.182 7 C -0.102 4.102 8 C -0.230 4.230 9 C 0.093 3.907 10 O -0.210 6.210 11 C -0.049 4.049 12 C 0.023 3.977 13 H 0.122 0.878 14 O -0.345 6.345 15 C -0.001 4.001 16 N -0.311 5.311 17 C -0.374 4.374 18 H 0.089 0.911 19 C -0.202 4.202 20 N -0.550 5.550 21 Si 0.740 3.260 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.213 1.213 25 C 0.056 3.944 26 C -0.155 4.155 27 C -0.190 4.190 28 H 0.111 0.889 29 H 0.114 0.886 30 H 0.129 0.871 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.143 0.857 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.146 0.854 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.205 0.795 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.019 0.981 44 H 0.118 0.882 45 H 0.111 0.889 46 H 0.021 0.979 47 H 0.045 0.955 48 H 0.076 0.924 49 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -10.108 6.194 14.971 19.097 hybrid contribution 0.943 0.197 0.099 0.968 sum -9.165 6.391 15.070 18.761 Atomic orbital electron populations 1.23763 0.95776 1.01544 1.03277 1.22891 0.95642 0.98458 0.97853 1.19587 0.96378 0.95627 0.96782 1.19131 0.93068 1.02587 0.96668 1.20846 0.99209 0.97924 0.91768 1.20976 0.94717 1.03453 0.99095 1.20916 0.96243 0.96335 0.96742 1.21293 1.00672 1.06758 0.94230 1.18984 0.93120 0.92899 0.85746 1.86229 1.34129 1.69354 1.31337 1.23875 0.82320 0.97421 1.01274 1.23120 0.93164 0.88889 0.92502 0.87850 1.86683 1.60269 1.30677 1.56842 1.21220 0.92239 0.97411 0.89208 1.44017 1.73037 1.08557 1.05470 1.19279 1.33653 0.90594 0.93877 0.91149 1.24807 1.01103 0.95950 0.98358 1.70242 1.51892 1.09212 1.23654 0.86257 0.79059 0.79331 0.81390 1.21369 1.21661 1.21281 1.21046 0.92393 0.80633 1.00375 1.22214 1.02847 0.93962 0.96456 1.21564 0.98380 0.97779 1.01257 0.88865 0.88623 0.87134 0.90964 0.89334 0.85742 0.86194 0.86072 0.85447 0.91552 0.92278 0.79466 0.92590 0.94139 0.94014 0.98083 0.88202 0.88859 0.97948 0.95491 0.92447 0.95481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.11 14.32 29.01 0.42 -1.69 16 2 C -0.13 -1.55 9.50 -36.03 -0.34 -1.89 16 3 C -0.05 -0.55 5.51 -29.04 -0.16 -0.71 16 4 C -0.11 -1.41 5.13 -104.47 -0.54 -1.94 16 5 C -0.08 -0.83 9.68 -39.61 -0.38 -1.22 16 6 C -0.16 -1.61 10.04 -39.56 -0.40 -2.01 16 7 C -0.08 -0.87 10.04 -39.61 -0.40 -1.26 16 8 C -0.21 -2.50 9.04 -39.43 -0.36 -2.86 16 9 C 0.14 1.87 6.66 -39.21 -0.26 1.61 16 10 O -0.30 -4.48 9.24 -24.25 -0.22 -4.71 16 11 C 0.03 0.38 4.37 37.16 0.16 0.54 16 12 C 0.09 1.48 3.51 -26.73 -0.09 1.39 16 13 H 0.10 2.05 8.14 -51.93 -0.42 1.63 16 14 O -0.54 -9.90 11.93 -40.08 -0.48 -10.38 16 15 C 0.13 2.42 5.35 -4.04 -0.02 2.40 16 16 N -0.59 -14.07 2.51 -173.24 -0.43 -14.50 16 17 C -0.24 -6.43 9.76 -15.06 -0.15 -6.58 16 18 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 19 C -0.01 -0.17 5.19 -17.43 -0.09 -0.26 16 20 N -0.90 -24.39 7.26 55.49 0.40 -23.99 16 21 Si 0.91 21.47 29.55 -169.99 -5.02 16.45 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 25 C 0.18 4.27 4.66 -4.05 -0.02 4.25 16 26 C -0.12 -2.64 5.33 -26.73 -0.14 -2.78 16 27 C -0.13 -2.64 9.91 37.16 0.37 -2.27 16 28 H 0.09 0.82 7.84 -52.49 -0.41 0.41 16 29 H 0.10 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 31 H 0.07 0.70 7.70 -51.93 -0.40 0.30 16 32 H 0.09 1.16 7.69 -51.93 -0.40 0.77 16 33 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 35 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 36 H 0.13 1.36 6.30 -52.49 -0.33 1.03 16 37 H 0.07 0.84 7.66 -51.93 -0.40 0.44 16 38 H 0.06 0.72 7.66 -51.93 -0.40 0.32 16 39 H 0.36 5.32 8.80 45.56 0.40 5.72 16 40 H 0.06 1.01 8.01 -51.93 -0.42 0.60 16 41 H 0.04 0.70 8.10 -51.92 -0.42 0.28 16 42 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 43 H 0.00 0.02 6.79 -51.93 -0.35 -0.33 16 44 H 0.10 2.72 5.92 -51.93 -0.31 2.41 16 45 H 0.09 2.45 6.01 -51.93 -0.31 2.14 16 46 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 47 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 49 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 395.44 15.07 5.96 5.96 Total: -1.00 -28.92 395.44 -9.72 -38.64 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -7.52 Total: 7.80 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -2.40 Total: -15.28 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: -0.03 Total: -38.49 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -0.70 Total: -15.08 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -28.92 -9.72 -38.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118004415.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.696 kcal (2) G-P(sol) polarization free energy of solvation -28.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds