Wall clock time and date at job start Tue Mar 31 2020 12:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50693 * 120.00113 * 2 1 4 4 C 1.50701 * 109.47194 * 125.00026 * 3 2 1 5 5 C 1.38162 * 120.02658 * 265.01851 * 4 3 2 6 6 C 1.38246 * 120.05319 * 179.97438 * 5 4 3 7 7 C 1.38290 * 120.11284 * 359.74772 * 6 5 4 8 8 C 1.38119 * 120.05415 * 0.50540 * 7 6 5 9 9 C 1.38713 * 120.02653 * 85.00057 * 4 3 2 10 10 O 1.35891 * 120.05768 * 359.97438 * 9 4 3 11 11 C 1.42898 * 117.00211 * 180.02562 * 10 9 4 12 12 C 1.52999 * 109.47644 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.47487 * 54.99683 * 12 11 10 14 14 O 1.42906 * 109.46540 * 295.00146 * 12 11 10 15 15 C 1.52995 * 109.47539 * 175.00226 * 12 11 10 16 16 N 1.46506 * 109.47230 * 181.69530 * 15 12 11 17 17 C 1.36941 * 119.99300 * 93.20591 * 16 15 12 18 18 H 1.07993 * 120.00227 * 351.10216 * 17 16 15 19 19 C 1.38811 * 119.99546 * 171.09800 * 17 16 15 20 20 N 1.31620 * 120.00161 * 1.63349 * 19 17 16 21 21 Si 1.86798 * 120.00126 * 181.63446 * 19 17 16 22 22 H 1.48497 * 109.47144 * 59.99860 * 21 19 17 23 23 H 1.48496 * 109.47458 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46971 * 299.99955 * 21 19 17 25 25 C 1.46493 * 120.00418 * 273.20971 * 16 15 12 26 26 C 1.52995 * 109.47005 * 262.71426 * 25 16 15 27 27 C 1.53008 * 109.47300 * 185.83363 * 26 25 16 28 28 H 1.08001 * 119.99671 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.00428 * 180.02562 * 1 2 3 30 30 H 1.08006 * 119.99458 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47367 * 4.99721 * 3 2 1 32 32 H 1.09004 * 109.46913 * 244.99758 * 3 2 1 33 33 H 1.08000 * 119.97773 * 0.02562 * 5 4 3 34 34 H 1.08008 * 119.93988 * 180.02562 * 6 5 4 35 35 H 1.08005 * 119.96969 * 180.27683 * 7 6 5 36 36 H 1.07997 * 120.02843 * 179.76580 * 8 7 6 37 37 H 1.09005 * 109.47551 * 300.00469 * 11 10 9 38 38 H 1.09004 * 109.47175 * 60.00732 * 11 10 9 39 39 H 0.96693 * 114.00230 * 299.99234 * 14 12 11 40 40 H 1.09001 * 109.47030 * 301.69982 * 15 12 11 41 41 H 1.09008 * 109.46947 * 61.69884 * 15 12 11 42 42 H 0.97003 * 120.00456 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.47326 * 22.70648 * 25 16 15 44 44 H 1.08993 * 109.47544 * 142.70609 * 25 16 15 45 45 H 1.09001 * 109.47103 * 305.82926 * 26 25 16 46 46 H 1.08996 * 109.47770 * 65.83059 * 26 25 16 47 47 H 1.09001 * 109.46686 * 299.99818 * 27 26 25 48 48 H 1.08996 * 109.46957 * 59.99198 * 27 26 25 49 49 H 1.08995 * 109.47047 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0204 1.3326 1.1639 5 6 2.6459 1.9281 2.3530 6 6 3.5231 1.9532 3.4212 7 6 4.7753 1.3781 3.3043 8 6 5.1565 0.7862 2.1160 9 6 4.2779 0.7598 1.0423 10 8 4.6484 0.1727 -0.1260 11 6 5.9577 -0.3972 -0.1790 12 6 6.1932 -1.0063 -1.5627 13 1 6.0171 -0.2500 -2.3275 14 8 5.2960 -2.1011 -1.7600 15 6 7.6361 -1.5053 -1.6615 16 7 7.8733 -2.0519 -2.9999 17 6 8.3907 -1.2524 -3.9840 18 1 8.4895 -0.1896 -3.8200 19 6 8.7880 -1.8082 -5.1923 20 7 8.6378 -3.0985 -5.4042 21 14 9.5359 -0.7249 -6.5177 22 1 10.7691 -0.0834 -5.9951 23 1 9.8727 -1.5538 -7.7028 24 1 8.5600 0.3238 -6.9089 25 6 7.5570 -3.4534 -3.2855 26 6 8.8279 -4.2971 -3.1683 27 6 8.5297 -5.7323 -3.6069 28 1 -0.5400 0.9354 0.0004 29 1 -0.5401 -0.9353 0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6213 1.4025 -0.9314 33 1 1.6667 2.3736 2.4484 34 1 3.2282 2.4188 4.3500 35 1 5.4571 1.3951 4.1417 36 1 6.1359 0.3406 2.0239 37 1 6.6998 0.3793 0.0068 38 1 6.0468 -1.1742 0.5802 39 1 5.3966 -2.8134 -1.1139 40 1 8.3204 -0.6763 -1.4810 41 1 7.8033 -2.2833 -0.9164 42 1 8.9151 -3.4869 -6.2488 43 1 6.8160 -3.8116 -2.5708 44 1 7.1572 -3.5371 -4.2960 45 1 9.6039 -3.8758 -3.8073 46 1 9.1700 -4.2972 -2.1334 47 1 7.7536 -6.1536 -2.9678 48 1 8.1876 -5.7322 -4.6418 49 1 9.4352 -6.3332 -3.5238 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118004415.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:55 Heat of formation + Delta-G solvation = -33.806839 kcal Electronic energy + Delta-G solvation = -27069.038898 eV Core-core repulsion = 23383.341725 eV Total energy + Delta-G solvation = -3685.697173 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.26110 -39.34969 -38.15760 -36.92705 -36.04324 -33.61702 -33.24491 -32.22983 -31.38951 -30.40014 -27.37514 -27.29501 -27.03341 -24.23110 -22.90487 -22.75820 -22.09830 -21.57007 -20.65875 -19.06324 -18.67517 -17.68537 -17.33104 -16.93038 -16.76298 -16.39173 -15.82562 -15.63555 -15.56905 -15.44566 -15.03581 -14.93944 -14.52808 -14.42254 -14.12722 -13.81818 -13.68856 -13.29806 -13.07603 -13.03589 -12.80069 -12.61895 -12.55537 -12.39481 -12.17490 -12.12343 -12.03010 -11.88927 -11.81337 -11.74877 -11.52538 -11.47209 -11.30758 -10.94549 -10.22690 -10.18725 -9.76383 -9.04236 -8.64955 -7.57764 -5.09395 0.38740 0.52848 1.43834 1.49544 1.50590 1.56158 2.19569 2.56786 2.84149 3.40591 3.56401 3.64999 3.86459 3.89399 4.02843 4.04377 4.17232 4.25474 4.28705 4.33338 4.42522 4.47000 4.48226 4.55175 4.64106 4.71003 4.75797 4.77274 4.94072 4.96086 5.00516 5.07128 5.08249 5.15513 5.21369 5.30264 5.43770 5.53306 5.59429 5.62307 5.66018 5.69183 5.75330 5.89320 5.93834 6.05766 6.32381 6.51216 6.54566 6.93631 7.31891 8.01359 8.37499 9.28954 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015132 B = 0.002829 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.904805 B = 9895.705535 C = 9914.204966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.155 4.155 3 C -0.042 4.042 4 C -0.130 4.130 5 C -0.083 4.083 6 C -0.161 4.161 7 C -0.088 4.088 8 C -0.220 4.220 9 C 0.109 3.891 10 O -0.321 6.321 11 C 0.040 3.960 12 C 0.099 3.901 13 H 0.069 0.931 14 O -0.563 6.563 15 C 0.128 3.872 16 N -0.609 5.609 17 C -0.255 4.255 18 H 0.070 0.930 19 C -0.055 4.055 20 N -0.914 5.914 21 Si 0.963 3.037 22 H -0.282 1.282 23 H -0.296 1.296 24 H -0.288 1.288 25 C 0.188 3.812 26 C -0.107 4.107 27 C -0.123 4.123 28 H 0.112 0.888 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.136 0.864 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.376 0.624 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.240 0.760 43 H 0.018 0.982 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.012 0.988 47 H 0.048 0.952 48 H 0.038 0.962 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.655 6.692 18.609 22.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.173 4.173 3 C -0.079 4.079 4 C -0.131 4.131 5 C -0.100 4.100 6 C -0.179 4.179 7 C -0.106 4.106 8 C -0.238 4.238 9 C 0.064 3.936 10 O -0.235 6.235 11 C -0.036 4.036 12 C 0.037 3.963 13 H 0.087 0.913 14 O -0.369 6.369 15 C 0.000 4.000 16 N -0.330 5.330 17 C -0.385 4.385 18 H 0.088 0.912 19 C -0.249 4.249 20 N -0.562 5.562 21 Si 0.793 3.207 22 H -0.208 1.208 23 H -0.223 1.223 24 H -0.214 1.214 25 C 0.063 3.937 26 C -0.146 4.146 27 C -0.181 4.181 28 H 0.130 0.870 29 H 0.122 0.878 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.081 0.919 33 H 0.165 0.835 34 H 0.167 0.833 35 H 0.165 0.835 36 H 0.154 0.846 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.223 0.777 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.050 0.950 43 H 0.036 0.964 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.031 0.969 47 H 0.067 0.933 48 H 0.058 0.942 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.892 6.951 17.753 21.957 hybrid contribution 1.073 0.005 -0.640 1.249 sum -9.820 6.956 17.112 20.920 Atomic orbital electron populations 1.23979 0.95110 1.02851 1.00583 1.22803 0.96322 0.97767 1.00391 1.19528 0.96481 0.96244 0.95667 1.19377 0.92953 1.03106 0.97635 1.21159 1.00406 0.97336 0.91147 1.21382 0.94230 1.02382 0.99879 1.21281 0.96994 0.95508 0.96833 1.21491 1.00836 1.07105 0.94418 1.19258 0.94266 0.94353 0.85714 1.86160 1.34357 1.70195 1.32808 1.23604 0.82641 0.98255 0.99143 1.22679 0.91814 0.88089 0.93730 0.91300 1.86637 1.60591 1.31595 1.58028 1.21382 0.93074 0.98162 0.87359 1.44181 1.73372 1.08532 1.06887 1.19535 1.33284 0.90976 0.94749 0.91194 1.25434 1.02227 0.97101 1.00127 1.70461 1.52461 1.10021 1.23299 0.85406 0.78349 0.77805 0.79138 1.20836 1.22278 1.21424 1.20802 0.93030 0.81246 0.98612 1.22020 1.01226 0.95255 0.96143 1.21454 0.99803 0.96374 1.00456 0.86971 0.87800 0.89296 0.88954 0.91872 0.83496 0.83333 0.83530 0.84639 0.90324 0.90173 0.77682 0.91952 0.91914 0.94966 0.96388 0.92049 0.92420 0.96949 0.93342 0.94244 0.93828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.56 14.32 67.78 0.97 -2.59 16 2 C -0.15 -3.67 9.50 25.64 0.24 -3.43 16 3 C -0.04 -0.99 5.51 29.10 0.16 -0.83 16 4 C -0.13 -3.12 5.13 -19.77 -0.10 -3.22 16 5 C -0.08 -1.54 9.68 22.25 0.22 -1.33 16 6 C -0.16 -2.65 10.04 22.28 0.22 -2.43 16 7 C -0.09 -1.57 10.04 22.25 0.22 -1.35 16 8 C -0.22 -4.86 9.04 22.37 0.20 -4.66 16 9 C 0.11 2.91 6.66 22.51 0.15 3.06 16 10 O -0.32 -9.83 9.24 -87.68 -0.81 -10.64 16 11 C 0.04 1.07 4.37 71.98 0.31 1.38 16 12 C 0.10 3.45 3.51 30.59 0.11 3.55 16 13 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 14 O -0.56 -20.72 11.93 -144.34 -1.72 -22.44 16 15 C 0.13 4.74 5.35 86.38 0.46 5.20 16 16 N -0.61 -29.29 2.51 -702.02 -1.76 -31.05 16 17 C -0.26 -13.68 9.76 84.03 0.82 -12.86 16 18 H 0.07 3.65 7.83 -2.91 -0.02 3.62 16 19 C -0.06 -3.00 5.19 84.86 0.44 -2.56 16 20 N -0.91 -50.93 7.26 21.65 0.16 -50.77 16 21 Si 0.96 45.14 29.55 68.60 2.03 47.17 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 23 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 24 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 25 C 0.19 9.00 4.66 86.38 0.40 9.40 16 26 C -0.11 -4.87 5.33 30.60 0.16 -4.71 16 27 C -0.12 -4.82 9.91 71.98 0.71 -4.10 16 28 H 0.11 1.69 7.84 -2.91 -0.02 1.66 16 29 H 0.10 1.77 8.06 -2.91 -0.02 1.74 16 30 H 0.09 2.45 8.06 -2.91 -0.02 2.43 16 31 H 0.09 1.69 7.70 -2.39 -0.02 1.67 16 32 H 0.06 1.76 7.69 -2.39 -0.02 1.74 16 33 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 34 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 36 H 0.14 2.64 6.30 -2.91 -0.02 2.62 16 37 H 0.08 1.90 7.66 -2.38 -0.02 1.88 16 38 H 0.08 1.81 7.66 -2.39 -0.02 1.79 16 39 H 0.38 10.84 8.80 -74.06 -0.65 10.18 16 40 H 0.06 2.22 8.01 -2.39 -0.02 2.20 16 41 H 0.06 2.05 8.10 -2.38 -0.02 2.03 16 42 H 0.24 13.31 8.31 -92.71 -0.77 12.54 16 43 H 0.02 0.78 6.79 -2.39 -0.02 0.77 16 44 H 0.06 3.45 5.92 -2.39 -0.01 3.43 16 45 H 0.06 3.08 6.01 -2.39 -0.01 3.06 16 46 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -64.47 395.44 3.87 -60.60 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: 0.26 Total: 28.59 kcal Atomic # 6 Polarization: -27.17 SS G_CDS: 5.71 Total: -21.46 kcal Atomic # 7 Polarization: -80.22 SS G_CDS: -1.60 Total: -81.82 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -2.53 Total: -33.08 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -64.47 3.87 -60.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118004415.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.793 kcal (2) G-P(sol) polarization free energy of solvation -64.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds