Wall clock time and date at job start Tue Mar 31 2020 12:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47012 * 2 1 4 4 N 1.46497 * 109.47158 * 179.97438 * 3 2 1 5 5 C 1.36939 * 120.00254 * 269.30494 * 4 3 2 6 6 H 1.07995 * 119.99697 * 322.09898 * 5 4 3 7 7 C 1.38811 * 119.99731 * 142.10673 * 5 4 3 8 8 N 1.31619 * 119.99826 * 157.15873 * 7 5 4 9 9 Si 1.86801 * 120.00421 * 337.15489 * 7 5 4 10 10 H 1.48497 * 109.46829 * 95.69526 * 9 7 5 11 11 H 1.48499 * 109.47245 * 215.70054 * 9 7 5 12 12 H 1.48506 * 109.46786 * 335.70013 * 9 7 5 13 13 C 1.46506 * 119.99818 * 89.57890 * 4 3 2 14 14 C 1.50697 * 109.47274 * 89.99881 * 13 4 3 15 15 C 1.38368 * 119.84977 * 269.73189 * 14 13 4 16 16 C 1.37940 * 120.14924 * 179.72362 * 15 14 13 17 17 C 1.39627 * 119.84681 * 0.56762 * 16 15 14 18 18 C 1.47730 * 120.15246 * 179.68385 * 17 16 15 19 19 O 1.21468 * 120.00320 * 180.02562 * 18 17 16 20 20 O 1.34721 * 119.99739 * 0.02562 * 18 17 16 21 21 C 1.45195 * 116.99739 * 180.02562 * 20 18 17 22 22 C 1.53000 * 109.47173 * 60.00053 * 21 20 18 23 23 C 1.52998 * 109.47112 * 180.02562 * 21 20 18 24 24 C 1.52998 * 109.47372 * 300.00143 * 21 20 18 25 25 C 1.39631 * 119.70269 * 359.70164 * 17 16 15 26 26 C 1.37944 * 119.84453 * 0.02562 * 25 17 16 27 27 H 1.08998 * 109.46851 * 299.99619 * 1 2 3 28 28 H 1.08998 * 109.47211 * 59.99209 * 1 2 3 29 29 H 1.09004 * 109.46949 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46594 * 240.00506 * 2 1 3 31 31 H 1.08991 * 109.47296 * 120.00404 * 2 1 3 32 32 H 1.08998 * 109.47002 * 60.00473 * 3 2 1 33 33 H 1.08998 * 109.47778 * 300.00444 * 3 2 1 34 34 H 0.96998 * 120.00530 * 179.97438 * 8 7 5 35 35 H 1.08996 * 109.47040 * 210.00554 * 13 4 3 36 36 H 1.09005 * 109.47098 * 330.00080 * 13 4 3 37 37 H 1.08002 * 119.92481 * 359.97438 * 15 14 13 38 38 H 1.08001 * 120.08185 * 180.27164 * 16 15 14 39 39 H 1.08999 * 109.46953 * 60.00052 * 22 21 20 40 40 H 1.09007 * 109.47053 * 179.97438 * 22 21 20 41 41 H 1.08992 * 109.47195 * 299.99683 * 22 21 20 42 42 H 1.09002 * 109.46975 * 59.99509 * 23 21 20 43 43 H 1.08997 * 109.47351 * 180.02562 * 23 21 20 44 44 H 1.09002 * 109.46912 * 300.00467 * 23 21 20 45 45 H 1.08998 * 109.47715 * 60.00042 * 24 21 20 46 46 H 1.09007 * 109.47118 * 180.02562 * 24 21 20 47 47 H 1.09004 * 109.47227 * 300.00062 * 24 21 20 48 48 H 1.08002 * 120.07669 * 179.97438 * 25 17 16 49 49 H 1.08004 * 119.92269 * 180.02562 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.4571 1.1867 6 1 3.8197 2.0419 2.0161 7 6 5.3578 0.7204 1.3229 8 7 6.2428 1.0534 2.2385 9 14 5.6744 -0.7437 0.2068 10 1 6.5136 -0.3180 -0.9420 11 1 6.3806 -1.8042 0.9697 12 1 4.3806 -1.2728 -0.2946 13 6 4.2380 1.4330 -1.2678 14 6 4.4893 2.8505 -1.7135 15 6 3.5677 3.4918 -2.5221 16 6 3.7888 4.7912 -2.9290 17 6 4.9514 5.4552 -2.5327 18 6 5.1982 6.8445 -2.9702 19 8 6.2108 7.4194 -2.6242 20 8 4.3003 7.4737 -3.7530 21 6 4.6087 8.8373 -4.1450 22 6 5.9229 8.8580 -4.9282 23 6 3.4817 9.3825 -5.0244 24 6 4.7464 9.7086 -2.8949 25 6 5.8798 4.8001 -1.7212 26 6 5.6435 3.5026 -1.3170 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9562 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 7.0592 0.5384 2.3340 35 1 5.1903 0.9201 -1.1333 36 1 3.6492 0.9135 -2.0239 37 1 2.6713 2.9753 -2.8321 38 1 3.0666 5.2922 -3.5566 39 1 5.8249 8.2374 -5.8188 40 1 6.1542 9.8817 -5.2228 41 1 6.7256 8.4699 -4.3013 42 1 2.5457 9.3677 -4.4660 43 1 3.7134 10.4060 -5.3190 44 1 3.3832 8.7618 -5.9150 45 1 5.5491 9.3205 -2.2679 46 1 4.9774 10.7324 -3.1892 47 1 3.8101 9.6939 -2.3368 48 1 6.7813 5.3079 -1.4114 49 1 6.3606 2.9949 -0.6890 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124117636.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:56 Heat of formation + Delta-G solvation = -51.861758 kcal Electronic energy + Delta-G solvation = -27206.756135 eV Core-core repulsion = 23520.276042 eV Total energy + Delta-G solvation = -3686.480093 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.75298 -38.86258 -36.93647 -36.20747 -34.15204 -33.10223 -31.93044 -30.59059 -30.47465 -27.58972 -27.54258 -26.74311 -25.78116 -23.51207 -22.25643 -22.12816 -20.99635 -19.96130 -19.53053 -17.60665 -16.97847 -16.66374 -15.89680 -15.61802 -15.00212 -14.86376 -14.70206 -14.41832 -14.26033 -14.08840 -13.67320 -13.53501 -13.11413 -13.01660 -12.69392 -12.61802 -12.49718 -12.44497 -12.07818 -12.05787 -12.04260 -11.93242 -11.53765 -11.39091 -11.25576 -11.16604 -10.84588 -10.76712 -10.72758 -10.46589 -10.45076 -10.05189 -9.93062 -9.88734 -9.64722 -8.63106 -8.56216 -8.38182 -6.95609 -6.09581 -3.49472 1.05275 1.81370 2.69958 2.81527 3.23471 3.41324 3.45472 4.15766 4.43395 4.54275 4.59789 4.71334 4.76933 5.02594 5.16504 5.21924 5.28185 5.31519 5.35202 5.45864 5.50156 5.54290 5.57217 5.61688 5.67478 5.68426 5.78842 5.82938 5.84644 5.93082 6.07870 6.09892 6.10215 6.14025 6.21186 6.32533 6.38826 6.44245 6.47479 6.49494 6.54657 6.64264 6.82827 6.84062 7.02013 7.15312 7.32136 7.94769 7.96027 8.30972 8.87154 9.60047 10.00340 11.05174 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016765 B = 0.003216 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.708576 B = 8705.088938 C = 9697.713252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.146 4.146 3 C 0.151 3.849 4 N -0.594 5.594 5 C -0.267 4.267 6 H 0.079 0.921 7 C 0.040 3.960 8 N -0.891 5.891 9 Si 0.868 3.132 10 H -0.284 1.284 11 H -0.300 1.300 12 H -0.264 1.264 13 C 0.161 3.839 14 C -0.039 4.039 15 C -0.135 4.135 16 C -0.068 4.068 17 C -0.152 4.152 18 C 0.517 3.483 19 O -0.511 6.511 20 O -0.348 6.348 21 C 0.117 3.883 22 C -0.183 4.183 23 C -0.140 4.140 24 C -0.184 4.184 25 C -0.054 4.054 26 C -0.107 4.107 27 H 0.050 0.950 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.039 0.961 34 H 0.265 0.735 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.122 0.878 38 H 0.127 0.873 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.085 0.915 46 H 0.069 0.931 47 H 0.061 0.939 48 H 0.130 0.870 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.284 10.893 -14.119 18.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.026 3.974 4 N -0.314 5.314 5 C -0.395 4.395 6 H 0.097 0.903 7 C -0.161 4.161 8 N -0.531 5.531 9 Si 0.698 3.302 10 H -0.212 1.212 11 H -0.228 1.228 12 H -0.189 1.189 13 C 0.035 3.965 14 C -0.043 4.043 15 C -0.154 4.154 16 C -0.086 4.086 17 C -0.154 4.154 18 C 0.364 3.636 19 O -0.401 6.401 20 O -0.266 6.266 21 C 0.081 3.919 22 C -0.240 4.240 23 C -0.197 4.197 24 C -0.241 4.241 25 C -0.072 4.072 26 C -0.125 4.125 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.140 0.860 38 H 0.145 0.855 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.104 0.896 46 H 0.088 0.912 47 H 0.080 0.920 48 H 0.148 0.852 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.854 11.041 -13.897 18.690 hybrid contribution 0.392 -0.692 -0.449 0.914 sum -5.463 10.349 -14.346 18.514 Atomic orbital electron populations 1.21729 0.97108 1.00582 1.01059 1.22127 0.93883 1.00603 1.01932 1.20960 0.83572 0.93611 0.99281 1.44133 1.00602 1.85351 1.01306 1.18782 1.06194 1.23879 0.90652 0.90348 1.25460 0.96737 0.97514 0.96413 1.69885 1.08351 1.38985 1.35860 0.87071 0.78349 0.84747 0.80082 1.21170 1.22762 1.18862 1.20406 0.97469 0.89914 0.88676 1.21285 0.92241 0.99771 0.90985 1.20973 0.99787 0.94695 0.99900 1.21261 0.95390 0.94378 0.97583 1.18961 0.99045 0.91098 1.06307 1.21248 0.80540 0.86923 0.74927 1.90703 1.27943 1.66957 1.54470 1.86602 1.48467 1.28780 1.62770 1.22132 0.96037 0.78753 0.95023 1.22491 0.97810 1.02929 1.00764 1.21840 0.97555 1.00883 0.99402 1.22498 1.03879 0.99814 0.97885 1.21214 0.97825 0.94258 0.93893 1.21144 0.98210 0.93989 0.99188 0.93047 0.93461 0.93693 0.93222 0.91686 0.92929 0.94288 0.92543 0.91763 0.92855 0.85988 0.85465 0.92070 0.91245 0.89668 0.91453 0.90498 0.91522 0.89634 0.91248 0.91975 0.85225 0.84708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.16 0.37 -1.63 16 2 C -0.15 -2.51 6.26 -26.73 -0.17 -2.68 16 3 C 0.15 2.83 5.67 -4.05 -0.02 2.81 16 4 N -0.59 -13.15 2.05 -174.61 -0.36 -13.51 16 5 C -0.27 -7.02 9.90 -15.06 -0.15 -7.17 16 6 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 7 C 0.04 1.09 5.29 -17.43 -0.09 1.00 16 8 N -0.89 -25.89 13.97 55.49 0.78 -25.12 16 9 Si 0.87 20.93 25.10 -169.99 -4.27 16.66 16 10 H -0.28 -6.63 6.68 56.52 0.38 -6.25 16 11 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 12 H -0.26 -6.19 7.11 56.52 0.40 -5.79 16 13 C 0.16 3.26 4.64 -5.19 -0.02 3.24 16 14 C -0.04 -0.74 5.47 -104.53 -0.57 -1.31 16 15 C -0.13 -2.15 9.68 -39.64 -0.38 -2.53 16 16 C -0.07 -1.02 9.62 -39.17 -0.38 -1.40 16 17 C -0.15 -2.52 5.87 -104.98 -0.62 -3.13 16 18 C 0.52 8.17 7.21 34.61 0.25 8.41 16 19 O -0.51 -8.70 11.89 -19.24 -0.23 -8.93 16 20 O -0.35 -4.78 9.14 -40.55 -0.37 -5.16 16 21 C 0.12 1.29 1.13 -90.62 -0.10 1.19 16 22 C -0.18 -1.93 8.37 37.16 0.31 -1.62 16 23 C -0.14 -1.14 8.85 37.16 0.33 -0.81 16 24 C -0.18 -2.01 8.37 37.16 0.31 -1.70 16 25 C -0.05 -0.95 9.60 -39.17 -0.38 -1.32 16 26 C -0.11 -2.06 9.68 -39.64 -0.38 -2.45 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.05 1.01 8.03 -51.93 -0.42 0.59 16 33 H 0.04 0.65 8.08 -51.93 -0.42 0.23 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.06 1.43 3.32 -51.93 -0.17 1.26 16 36 H 0.05 0.96 8.01 -51.93 -0.42 0.54 16 37 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 38 H 0.13 1.63 7.61 -52.49 -0.40 1.23 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 1.10 5.88 -51.93 -0.31 0.80 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.08 1.14 5.88 -51.93 -0.31 0.84 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.13 2.20 7.65 -52.49 -0.40 1.80 16 49 H 0.14 2.83 8.06 -52.48 -0.42 2.41 16 LS Contribution 393.21 15.07 5.93 5.93 Total: -1.00 -29.12 393.21 -8.56 -37.68 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -8.34 Total: 3.54 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -1.70 Total: -11.10 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.42 Total: -38.62 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.60 Total: -14.09 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.27 Total: 16.66 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.12 -8.56 -37.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124117636.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.181 kcal (2) G-P(sol) polarization free energy of solvation -29.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds