Wall clock time and date at job start Tue Mar 31 2020 12:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47012 * 2 1 4 4 N 1.46497 * 109.47158 * 179.97438 * 3 2 1 5 5 C 1.36939 * 120.00254 * 269.30494 * 4 3 2 6 6 H 1.07995 * 119.99697 * 322.09898 * 5 4 3 7 7 C 1.38811 * 119.99731 * 142.10673 * 5 4 3 8 8 N 1.31619 * 119.99826 * 157.15873 * 7 5 4 9 9 Si 1.86801 * 120.00421 * 337.15489 * 7 5 4 10 10 H 1.48497 * 109.46829 * 95.69526 * 9 7 5 11 11 H 1.48499 * 109.47245 * 215.70054 * 9 7 5 12 12 H 1.48506 * 109.46786 * 335.70013 * 9 7 5 13 13 C 1.46506 * 119.99818 * 89.57890 * 4 3 2 14 14 C 1.50697 * 109.47274 * 89.99881 * 13 4 3 15 15 C 1.38368 * 119.84977 * 269.73189 * 14 13 4 16 16 C 1.37940 * 120.14924 * 179.72362 * 15 14 13 17 17 C 1.39627 * 119.84681 * 0.56762 * 16 15 14 18 18 C 1.47730 * 120.15246 * 179.68385 * 17 16 15 19 19 O 1.21468 * 120.00320 * 180.02562 * 18 17 16 20 20 O 1.34721 * 119.99739 * 0.02562 * 18 17 16 21 21 C 1.45195 * 116.99739 * 180.02562 * 20 18 17 22 22 C 1.53000 * 109.47173 * 60.00053 * 21 20 18 23 23 C 1.52998 * 109.47112 * 180.02562 * 21 20 18 24 24 C 1.52998 * 109.47372 * 300.00143 * 21 20 18 25 25 C 1.39631 * 119.70269 * 359.70164 * 17 16 15 26 26 C 1.37944 * 119.84453 * 0.02562 * 25 17 16 27 27 H 1.08998 * 109.46851 * 299.99619 * 1 2 3 28 28 H 1.08998 * 109.47211 * 59.99209 * 1 2 3 29 29 H 1.09004 * 109.46949 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46594 * 240.00506 * 2 1 3 31 31 H 1.08991 * 109.47296 * 120.00404 * 2 1 3 32 32 H 1.08998 * 109.47002 * 60.00473 * 3 2 1 33 33 H 1.08998 * 109.47778 * 300.00444 * 3 2 1 34 34 H 0.96998 * 120.00530 * 179.97438 * 8 7 5 35 35 H 1.08996 * 109.47040 * 210.00554 * 13 4 3 36 36 H 1.09005 * 109.47098 * 330.00080 * 13 4 3 37 37 H 1.08002 * 119.92481 * 359.97438 * 15 14 13 38 38 H 1.08001 * 120.08185 * 180.27164 * 16 15 14 39 39 H 1.08999 * 109.46953 * 60.00052 * 22 21 20 40 40 H 1.09007 * 109.47053 * 179.97438 * 22 21 20 41 41 H 1.08992 * 109.47195 * 299.99683 * 22 21 20 42 42 H 1.09002 * 109.46975 * 59.99509 * 23 21 20 43 43 H 1.08997 * 109.47351 * 180.02562 * 23 21 20 44 44 H 1.09002 * 109.46912 * 300.00467 * 23 21 20 45 45 H 1.08998 * 109.47715 * 60.00042 * 24 21 20 46 46 H 1.09007 * 109.47118 * 180.02562 * 24 21 20 47 47 H 1.09004 * 109.47227 * 300.00062 * 24 21 20 48 48 H 1.08002 * 120.07669 * 179.97438 * 25 17 16 49 49 H 1.08004 * 119.92269 * 180.02562 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.4571 1.1867 6 1 3.8197 2.0419 2.0161 7 6 5.3578 0.7204 1.3229 8 7 6.2428 1.0534 2.2385 9 14 5.6744 -0.7437 0.2068 10 1 6.5136 -0.3180 -0.9420 11 1 6.3806 -1.8042 0.9697 12 1 4.3806 -1.2728 -0.2946 13 6 4.2380 1.4330 -1.2678 14 6 4.4893 2.8505 -1.7135 15 6 3.5677 3.4918 -2.5221 16 6 3.7888 4.7912 -2.9290 17 6 4.9514 5.4552 -2.5327 18 6 5.1982 6.8445 -2.9702 19 8 6.2108 7.4194 -2.6242 20 8 4.3003 7.4737 -3.7530 21 6 4.6087 8.8373 -4.1450 22 6 5.9229 8.8580 -4.9282 23 6 3.4817 9.3825 -5.0244 24 6 4.7464 9.7086 -2.8949 25 6 5.8798 4.8001 -1.7212 26 6 5.6435 3.5026 -1.3170 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9562 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 7.0592 0.5384 2.3340 35 1 5.1903 0.9201 -1.1333 36 1 3.6492 0.9135 -2.0239 37 1 2.6713 2.9753 -2.8321 38 1 3.0666 5.2922 -3.5566 39 1 5.8249 8.2374 -5.8188 40 1 6.1542 9.8817 -5.2228 41 1 6.7256 8.4699 -4.3013 42 1 2.5457 9.3677 -4.4660 43 1 3.7134 10.4060 -5.3190 44 1 3.3832 8.7618 -5.9150 45 1 5.5491 9.3205 -2.2679 46 1 4.9774 10.7324 -3.1892 47 1 3.8101 9.6939 -2.3368 48 1 6.7813 5.3079 -1.4114 49 1 6.3606 2.9949 -0.6890 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124117636.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:55 Heat of formation + Delta-G solvation = -65.276959 kcal Electronic energy + Delta-G solvation = -27207.337862 eV Core-core repulsion = 23520.276042 eV Total energy + Delta-G solvation = -3687.061820 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.90260 -40.22105 -38.21926 -37.66810 -35.12566 -34.61977 -33.69051 -32.02619 -31.93657 -28.38276 -28.28563 -28.17216 -27.49550 -24.87828 -23.71224 -23.53639 -22.22975 -21.48633 -20.64621 -19.03292 -18.67169 -17.73816 -17.29826 -17.00978 -16.42737 -16.29322 -16.09108 -15.69637 -15.51322 -15.32788 -14.96683 -14.60789 -14.56655 -14.47409 -14.27890 -14.05959 -13.57319 -13.51107 -13.34839 -13.06877 -12.94181 -12.85905 -12.83345 -12.67468 -12.48589 -12.39616 -12.30110 -12.23287 -12.12531 -12.02749 -11.80228 -11.47614 -11.40491 -11.32786 -11.06227 -10.64198 -9.92484 -9.80486 -8.78952 -8.20065 -5.57126 -0.28395 0.45749 1.29483 1.41217 1.51775 1.53391 1.61865 2.41334 2.76145 3.12272 3.48897 3.58636 3.75560 3.79677 3.85974 3.95650 4.02601 4.03858 4.27430 4.28639 4.42738 4.47993 4.56945 4.60000 4.64068 4.69652 4.75849 4.76389 4.81539 4.84563 4.86356 4.88763 4.92080 4.98186 5.09534 5.12655 5.20517 5.26029 5.28877 5.29718 5.31403 5.38512 5.45522 5.52163 5.62281 5.72602 5.92184 5.96918 6.20084 6.77253 6.98399 7.62416 8.04010 8.99402 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016765 B = 0.003216 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.708576 B = 8705.088938 C = 9697.713252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.141 4.141 3 C 0.148 3.852 4 N -0.605 5.605 5 C -0.251 4.251 6 H 0.036 0.964 7 C -0.011 4.011 8 N -0.944 5.944 9 Si 0.929 3.071 10 H -0.275 1.275 11 H -0.313 1.313 12 H -0.247 1.247 13 C 0.159 3.841 14 C -0.054 4.054 15 C -0.122 4.122 16 C -0.053 4.053 17 C -0.155 4.155 18 C 0.518 3.482 19 O -0.528 6.528 20 O -0.346 6.346 21 C 0.105 3.895 22 C -0.181 4.181 23 C -0.134 4.134 24 C -0.183 4.183 25 C -0.063 4.063 26 C -0.127 4.127 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.033 0.967 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.262 0.738 35 H 0.040 0.960 36 H 0.087 0.913 37 H 0.158 0.842 38 H 0.162 0.838 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.101 0.899 44 H 0.072 0.928 45 H 0.055 0.945 46 H 0.094 0.906 47 H 0.063 0.937 48 H 0.124 0.876 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.323 11.845 -17.939 23.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.180 4.180 3 C 0.024 3.976 4 N -0.326 5.326 5 C -0.381 4.381 6 H 0.053 0.947 7 C -0.208 4.208 8 N -0.587 5.587 9 Si 0.758 3.242 10 H -0.202 1.202 11 H -0.241 1.241 12 H -0.171 1.171 13 C 0.035 3.965 14 C -0.057 4.057 15 C -0.140 4.140 16 C -0.071 4.071 17 C -0.156 4.156 18 C 0.365 3.635 19 O -0.420 6.420 20 O -0.263 6.263 21 C 0.069 3.931 22 C -0.238 4.238 23 C -0.191 4.191 24 C -0.240 4.240 25 C -0.081 4.081 26 C -0.146 4.146 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.105 0.895 37 H 0.175 0.825 38 H 0.180 0.820 39 H 0.085 0.915 40 H 0.112 0.888 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.119 0.881 44 H 0.091 0.909 45 H 0.074 0.926 46 H 0.113 0.887 47 H 0.082 0.918 48 H 0.142 0.858 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.938 12.005 -17.766 23.230 hybrid contribution 1.291 -0.765 0.674 1.645 sum -7.647 11.240 -17.092 21.839 Atomic orbital electron populations 1.21657 0.93994 1.01826 1.02194 1.22025 0.96590 0.98885 1.00529 1.21115 0.81427 0.94925 1.00174 1.44211 1.02023 1.85838 1.00536 1.18556 1.05922 1.22159 0.91490 0.94676 1.25982 0.96758 0.99879 0.98173 1.70014 1.09253 1.40557 1.38902 0.86072 0.78768 0.80965 0.78420 1.20200 1.24149 1.17098 1.20416 0.96689 0.91048 0.88382 1.21197 0.92895 0.99024 0.92614 1.21261 0.99772 0.94821 0.98164 1.21607 0.94889 0.93958 0.96622 1.19156 0.99194 0.91733 1.05538 1.21120 0.80589 0.86687 0.75061 1.90716 1.28814 1.67336 1.55119 1.86579 1.47592 1.30279 1.61866 1.22564 0.97646 0.77317 0.95547 1.22469 0.96637 1.04434 1.00244 1.21869 0.96266 1.02120 0.98836 1.22485 1.02789 1.01124 0.97571 1.21150 0.98432 0.93843 0.94714 1.20968 0.98705 0.94860 1.00046 0.92993 0.91252 0.92451 0.92897 0.94817 0.94327 0.91002 0.92924 0.94175 0.89461 0.82473 0.82043 0.91528 0.88806 0.92538 0.91131 0.88086 0.90896 0.92609 0.88741 0.91843 0.85754 0.87937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 9.91 71.98 0.71 -2.61 16 2 C -0.14 -4.55 6.26 30.59 0.19 -4.36 16 3 C 0.15 5.26 5.67 86.38 0.49 5.75 16 4 N -0.60 -26.59 2.05 -706.35 -1.45 -28.04 16 5 C -0.25 -13.80 9.90 84.03 0.83 -12.97 16 6 H 0.04 2.20 8.06 -2.91 -0.02 2.17 16 7 C -0.01 -0.62 5.29 84.86 0.45 -0.17 16 8 N -0.94 -58.20 13.97 21.65 0.30 -57.90 16 9 Si 0.93 44.62 25.10 68.60 1.72 46.34 16 10 H -0.27 -12.63 6.68 99.48 0.66 -11.97 16 11 H -0.31 -15.52 7.11 99.48 0.71 -14.81 16 12 H -0.25 -11.06 7.11 99.48 0.71 -10.35 16 13 C 0.16 6.24 4.64 85.63 0.40 6.64 16 14 C -0.05 -1.97 5.47 -19.80 -0.11 -2.08 16 15 C -0.12 -3.43 9.68 22.23 0.22 -3.22 16 16 C -0.05 -1.41 9.62 22.53 0.22 -1.19 16 17 C -0.15 -4.92 5.87 -20.10 -0.12 -5.04 16 18 C 0.52 15.85 7.21 70.33 0.51 16.36 16 19 O -0.53 -18.18 11.89 19.94 0.24 -17.94 16 20 O -0.35 -8.65 9.14 -56.31 -0.51 -9.17 16 21 C 0.10 2.05 1.13 -10.79 -0.01 2.04 16 22 C -0.18 -3.45 8.37 71.98 0.60 -2.85 16 23 C -0.13 -1.65 8.85 71.98 0.64 -1.02 16 24 C -0.18 -3.67 8.37 71.98 0.60 -3.07 16 25 C -0.06 -2.29 9.60 22.54 0.22 -2.08 16 26 C -0.13 -5.09 9.68 22.23 0.22 -4.87 16 27 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 31 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.04 1.46 8.03 -2.39 -0.02 1.45 16 33 H 0.07 2.09 8.08 -2.39 -0.02 2.07 16 34 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 35 H 0.04 1.77 3.32 -2.39 -0.01 1.77 16 36 H 0.09 2.81 8.01 -2.38 -0.02 2.79 16 37 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 38 H 0.16 3.26 7.61 -2.91 -0.02 3.24 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.06 1.43 5.88 -2.39 -0.01 1.41 16 42 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.05 1.47 5.88 -2.39 -0.01 1.46 16 46 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 47 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 48 H 0.12 4.52 7.65 -2.91 -0.02 4.49 16 49 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -68.14 393.21 7.21 -60.93 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.87 Total: 20.49 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: 6.05 Total: -14.71 kcal Atomic # 7 Polarization: -84.79 SS G_CDS: -1.14 Total: -85.94 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.28 Total: -27.11 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.72 Total: 46.34 kcal Total: -68.14 7.21 -60.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124117636.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.348 kcal (2) G-P(sol) polarization free energy of solvation -68.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds