Wall clock time and date at job start Tue Mar 31 2020 12:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47051 * 2 1 4 4 N 1.46503 * 109.46881 * 180.02562 * 3 2 1 5 5 C 1.37098 * 120.00033 * 264.76904 * 4 3 2 6 6 H 1.07999 * 120.00205 * 138.84823 * 5 4 3 7 7 C 1.38952 * 119.99703 * 318.85810 * 5 4 3 8 8 N 1.31407 * 120.00305 * 341.82758 * 7 5 4 9 9 Si 1.86805 * 119.99729 * 161.83217 * 7 5 4 10 10 H 1.48495 * 109.47459 * 59.99721 * 9 7 5 11 11 H 1.48498 * 109.46662 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47105 * 299.99232 * 9 7 5 13 13 C 1.34777 * 120.00094 * 84.77038 * 4 3 2 14 14 O 1.21293 * 119.99988 * 180.02562 * 13 4 3 15 15 C 1.50697 * 119.99867 * 359.97438 * 13 4 3 16 16 C 1.53008 * 109.47114 * 180.02562 * 15 13 4 17 17 C 1.52996 * 109.47383 * 180.02562 * 16 15 13 18 18 O 1.42895 * 109.47453 * 180.02562 * 17 16 15 19 19 C 1.35898 * 117.00304 * 180.02562 * 18 17 16 20 20 C 1.38746 * 120.05351 * 359.97438 * 19 18 17 21 21 C 1.38132 * 119.94245 * 180.02562 * 20 19 18 22 22 C 1.38282 * 120.05556 * 0.02562 * 21 20 19 23 23 C 1.50697 * 119.94323 * 179.97438 * 22 21 20 24 24 C 1.38247 * 120.11302 * 359.96010 * 22 21 20 25 25 C 1.38172 * 120.05332 * 359.76117 * 24 22 21 26 26 C 1.50699 * 120.02677 * 180.25600 * 25 24 22 27 27 H 1.09007 * 109.47077 * 59.99760 * 1 2 3 28 28 H 1.08993 * 109.47450 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47055 * 300.00196 * 1 2 3 30 30 H 1.09000 * 109.46834 * 240.00213 * 2 1 3 31 31 H 1.08997 * 109.47137 * 120.00345 * 2 1 3 32 32 H 1.09000 * 109.47127 * 60.00393 * 3 2 1 33 33 H 1.08995 * 109.47006 * 299.99858 * 3 2 1 34 34 H 0.96999 * 120.00477 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47421 * 60.00615 * 15 13 4 36 36 H 1.08999 * 109.47275 * 299.99560 * 15 13 4 37 37 H 1.09002 * 109.47075 * 59.99507 * 16 15 13 38 38 H 1.09006 * 109.46706 * 300.00010 * 16 15 13 39 39 H 1.09000 * 109.46924 * 299.99964 * 17 16 15 40 40 H 1.09005 * 109.46941 * 59.99425 * 17 16 15 41 41 H 1.07999 * 120.03127 * 0.03390 * 20 19 18 42 42 H 1.07998 * 119.96671 * 180.02562 * 21 20 19 43 43 H 1.09005 * 109.47137 * 90.00323 * 23 22 21 44 44 H 1.09004 * 109.47275 * 210.00476 * 23 22 21 45 45 H 1.09002 * 109.47470 * 330.00148 * 23 22 21 46 46 H 1.07994 * 119.97454 * 180.02562 * 24 22 21 47 47 H 1.08997 * 109.47309 * 270.28015 * 26 25 24 48 48 H 1.08998 * 109.47330 * 30.27571 * 26 25 24 49 49 H 1.08998 * 109.46888 * 150.27989 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1910 1.5505 1.1815 6 1 5.0710 0.9481 1.3522 7 6 3.7540 2.4350 2.1600 8 7 2.9284 3.4077 1.8451 9 14 4.3401 2.2413 3.9231 10 1 5.8197 2.3585 3.9686 11 1 3.7338 3.3032 4.7656 12 1 3.9329 0.9087 4.4365 13 6 4.1784 1.3362 -1.1633 14 8 5.3913 1.3357 -1.1637 15 6 3.4244 1.2169 -2.4625 16 6 4.4182 1.1105 -3.6211 17 6 3.6527 0.9900 -4.9403 18 8 4.5808 0.8901 -6.0222 19 6 4.0609 0.7763 -7.2726 20 6 2.6855 0.7606 -7.4545 21 6 2.1595 0.6442 -8.7264 22 6 3.0025 0.5430 -9.8179 23 6 2.4259 0.4156 -11.2044 24 6 4.3733 0.5587 -9.6393 25 6 4.9044 0.6806 -8.3696 26 6 6.3987 0.7035 -8.1762 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 2.6236 4.0254 2.5281 35 1 2.7974 2.0977 -2.6010 36 1 2.7981 0.3251 -2.4386 37 1 5.0449 0.2296 -3.4824 38 1 5.0448 2.0021 -3.6452 39 1 3.0257 0.0987 -4.9164 40 1 3.0262 1.8713 -5.0786 41 1 2.0266 0.8393 -6.6023 42 1 1.0889 0.6324 -8.8685 43 1 2.2877 1.4083 -11.6330 44 1 3.1087 -0.1587 -11.8305 45 1 1.4642 -0.0949 -11.1525 46 1 5.0295 0.4799 -10.4934 47 1 6.7628 -0.3145 -8.0376 48 1 6.8721 1.1421 -9.0546 49 1 6.6421 1.2994 -7.2966 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159444446.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:59 Heat of formation + Delta-G solvation = -74.829555 kcal Electronic energy + Delta-G solvation = -26320.817763 eV Core-core repulsion = 22633.341712 eV Total energy + Delta-G solvation = -3687.476052 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.35088 -38.71026 -37.81445 -35.34451 -33.82306 -33.04223 -32.51928 -31.64862 -31.14907 -27.68387 -27.31207 -26.09415 -25.64995 -24.37548 -22.71428 -21.15197 -20.88331 -20.75819 -18.82955 -17.89068 -16.85606 -16.39261 -16.25602 -15.75696 -15.11369 -14.93273 -14.59391 -14.52762 -14.29205 -13.95414 -13.77435 -13.55131 -13.35268 -13.31200 -13.02575 -12.77591 -12.58011 -12.32099 -12.06372 -11.87008 -11.77624 -11.57686 -11.46617 -11.38894 -11.33348 -11.19158 -10.95614 -10.94499 -10.69739 -10.60134 -10.40887 -10.34325 -10.22058 -9.92307 -8.94523 -8.90396 -8.38979 -8.04326 -7.40418 -6.30988 -3.99458 1.19302 1.30586 3.17708 3.20528 3.25685 3.29762 3.58434 3.93595 4.17483 4.60638 4.65241 4.74701 4.83965 4.98545 5.03412 5.07541 5.12469 5.19233 5.30026 5.34212 5.37692 5.47301 5.53316 5.55444 5.61332 5.63603 5.65171 5.73263 5.75926 5.77642 5.80870 5.96833 6.10413 6.12211 6.22883 6.27598 6.33093 6.34916 6.42079 6.45759 6.47177 6.58464 6.61456 6.73789 6.90009 7.22933 7.42985 7.59492 8.31351 8.53377 9.21437 9.41485 10.03939 10.74230 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.021736 B = 0.002326 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.848695 B =12035.021450 C =12954.490170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.109 3.891 4 N -0.443 5.443 5 C -0.309 4.309 6 H 0.087 0.913 7 C 0.038 3.962 8 N -0.873 5.873 9 Si 0.917 3.083 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.463 3.537 14 O -0.579 6.579 15 C -0.132 4.132 16 C -0.098 4.098 17 C 0.060 3.940 18 O -0.309 6.309 19 C 0.130 3.870 20 C -0.203 4.203 21 C -0.086 4.086 22 C -0.129 4.129 23 C -0.107 4.107 24 C -0.085 4.085 25 C -0.117 4.117 26 C -0.106 4.106 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.047 0.953 34 H 0.267 0.733 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.129 0.871 42 H 0.122 0.878 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.125 0.875 47 H 0.067 0.933 48 H 0.062 0.938 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.631 -5.514 -19.736 21.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C -0.015 4.015 4 N -0.162 5.162 5 C -0.437 4.437 6 H 0.104 0.896 7 C -0.166 4.166 8 N -0.510 5.510 9 Si 0.744 3.256 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.251 3.749 14 O -0.463 6.463 15 C -0.172 4.172 16 C -0.136 4.136 17 C -0.015 4.015 18 O -0.222 6.222 19 C 0.084 3.916 20 C -0.222 4.222 21 C -0.104 4.104 22 C -0.130 4.130 23 C -0.164 4.164 24 C -0.103 4.103 25 C -0.117 4.117 26 C -0.163 4.163 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.147 0.853 42 H 0.140 0.860 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.143 0.857 47 H 0.086 0.914 48 H 0.081 0.919 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.921 -5.331 -19.534 20.838 hybrid contribution -0.338 0.055 0.992 1.049 sum -5.259 -5.276 -18.542 19.983 Atomic orbital electron populations 1.21681 0.96369 1.00677 1.01561 1.22001 0.94860 0.99422 1.01727 1.21527 0.82363 0.94154 1.03457 1.43434 1.04375 1.63558 1.04857 1.19320 1.11929 1.21431 0.91013 0.89562 1.25416 0.97074 0.93559 1.00532 1.69912 1.33621 1.13452 1.34047 0.86148 0.79330 0.77889 0.82226 1.19734 1.21008 1.19896 1.20259 0.88064 0.81753 0.84805 1.90528 1.14157 1.54684 1.86894 1.21531 0.98712 1.02915 0.94086 1.21206 0.98170 1.04809 0.89417 1.22964 0.91996 1.00940 0.85561 1.86086 1.36302 1.87349 1.12492 1.18885 0.91582 0.96159 0.84928 1.21288 0.93981 1.08240 0.98686 1.20787 0.99392 0.98731 0.91522 1.19767 0.93454 1.04058 0.95678 1.20693 1.00800 1.01881 0.93000 1.20727 0.94434 0.99457 0.95681 1.19289 0.96097 1.05389 0.90967 1.20614 0.90508 1.02476 1.02654 0.93194 0.93458 0.92726 0.93159 0.91690 0.87848 0.93431 0.92258 0.90017 0.90282 0.90403 0.90286 0.92168 0.92088 0.85299 0.86030 0.91581 0.91834 0.91841 0.85673 0.91415 0.91894 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.14 -2.46 6.17 -26.73 -0.16 -2.63 16 3 C 0.11 2.30 4.69 -4.04 -0.02 2.28 16 4 N -0.44 -11.09 2.50 -114.81 -0.29 -11.38 16 5 C -0.31 -8.55 8.84 -14.93 -0.13 -8.68 16 6 H 0.09 2.50 7.82 -52.49 -0.41 2.09 16 7 C 0.04 1.02 4.95 -17.47 -0.09 0.93 16 8 N -0.87 -23.54 11.61 55.50 0.64 -22.90 16 9 Si 0.92 20.67 29.59 -169.99 -5.03 15.64 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 12 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 13 C 0.46 11.20 7.59 -10.99 -0.08 11.11 16 14 O -0.58 -16.20 15.89 5.55 0.09 -16.11 16 15 C -0.13 -2.34 4.31 -27.88 -0.12 -2.46 16 16 C -0.10 -1.62 4.87 -26.73 -0.13 -1.75 16 17 C 0.06 0.81 4.74 37.16 0.18 0.98 16 18 O -0.31 -4.50 9.18 -19.42 -0.18 -4.68 16 19 C 0.13 1.73 6.66 -39.22 -0.26 1.47 16 20 C -0.20 -2.37 9.04 -39.43 -0.36 -2.73 16 21 C -0.09 -0.88 9.69 -39.60 -0.38 -1.27 16 22 C -0.13 -1.26 5.88 -104.60 -0.62 -1.88 16 23 C -0.11 -0.74 10.01 36.00 0.36 -0.38 16 24 C -0.08 -0.87 9.35 -39.60 -0.37 -1.24 16 25 C -0.12 -1.40 5.89 -104.47 -0.62 -2.02 16 26 C -0.11 -1.12 9.79 36.00 0.35 -0.77 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.82 6.60 -51.93 -0.34 0.48 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.10 2.43 5.76 -51.93 -0.30 2.13 16 33 H 0.05 0.91 6.66 -51.93 -0.35 0.57 16 34 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 35 H 0.08 1.34 7.41 -51.93 -0.38 0.96 16 36 H 0.08 1.23 6.54 -51.93 -0.34 0.89 16 37 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 38 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 39 H 0.06 0.71 7.66 -51.93 -0.40 0.32 16 40 H 0.06 0.74 7.66 -51.93 -0.40 0.34 16 41 H 0.13 1.34 6.30 -52.49 -0.33 1.01 16 42 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 45 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 46 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 49 H 0.07 0.87 7.53 -51.93 -0.39 0.48 16 LS Contribution 396.15 15.07 5.97 5.97 Total: -1.00 -31.67 396.15 -9.13 -40.80 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -8.26 Total: 3.33 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -2.08 Total: -10.67 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.36 Total: -34.28 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.09 Total: -20.79 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.67 -9.13 -40.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159444446.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.028 kcal (2) G-P(sol) polarization free energy of solvation -31.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds