Wall clock time and date at job start Tue Mar 31 2020 12:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47051 * 2 1 4 4 N 1.46503 * 109.46881 * 180.02562 * 3 2 1 5 5 C 1.37098 * 120.00033 * 264.76904 * 4 3 2 6 6 H 1.07999 * 120.00205 * 138.84823 * 5 4 3 7 7 C 1.38952 * 119.99703 * 318.85810 * 5 4 3 8 8 N 1.31407 * 120.00305 * 341.82758 * 7 5 4 9 9 Si 1.86805 * 119.99729 * 161.83217 * 7 5 4 10 10 H 1.48495 * 109.47459 * 59.99721 * 9 7 5 11 11 H 1.48498 * 109.46662 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47105 * 299.99232 * 9 7 5 13 13 C 1.34777 * 120.00094 * 84.77038 * 4 3 2 14 14 O 1.21293 * 119.99988 * 180.02562 * 13 4 3 15 15 C 1.50697 * 119.99867 * 359.97438 * 13 4 3 16 16 C 1.53008 * 109.47114 * 180.02562 * 15 13 4 17 17 C 1.52996 * 109.47383 * 180.02562 * 16 15 13 18 18 O 1.42895 * 109.47453 * 180.02562 * 17 16 15 19 19 C 1.35898 * 117.00304 * 180.02562 * 18 17 16 20 20 C 1.38746 * 120.05351 * 359.97438 * 19 18 17 21 21 C 1.38132 * 119.94245 * 180.02562 * 20 19 18 22 22 C 1.38282 * 120.05556 * 0.02562 * 21 20 19 23 23 C 1.50697 * 119.94323 * 179.97438 * 22 21 20 24 24 C 1.38247 * 120.11302 * 359.96010 * 22 21 20 25 25 C 1.38172 * 120.05332 * 359.76117 * 24 22 21 26 26 C 1.50699 * 120.02677 * 180.25600 * 25 24 22 27 27 H 1.09007 * 109.47077 * 59.99760 * 1 2 3 28 28 H 1.08993 * 109.47450 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47055 * 300.00196 * 1 2 3 30 30 H 1.09000 * 109.46834 * 240.00213 * 2 1 3 31 31 H 1.08997 * 109.47137 * 120.00345 * 2 1 3 32 32 H 1.09000 * 109.47127 * 60.00393 * 3 2 1 33 33 H 1.08995 * 109.47006 * 299.99858 * 3 2 1 34 34 H 0.96999 * 120.00477 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47421 * 60.00615 * 15 13 4 36 36 H 1.08999 * 109.47275 * 299.99560 * 15 13 4 37 37 H 1.09002 * 109.47075 * 59.99507 * 16 15 13 38 38 H 1.09006 * 109.46706 * 300.00010 * 16 15 13 39 39 H 1.09000 * 109.46924 * 299.99964 * 17 16 15 40 40 H 1.09005 * 109.46941 * 59.99425 * 17 16 15 41 41 H 1.07999 * 120.03127 * 0.03390 * 20 19 18 42 42 H 1.07998 * 119.96671 * 180.02562 * 21 20 19 43 43 H 1.09005 * 109.47137 * 90.00323 * 23 22 21 44 44 H 1.09004 * 109.47275 * 210.00476 * 23 22 21 45 45 H 1.09002 * 109.47470 * 330.00148 * 23 22 21 46 46 H 1.07994 * 119.97454 * 180.02562 * 24 22 21 47 47 H 1.08997 * 109.47309 * 270.28015 * 26 25 24 48 48 H 1.08998 * 109.47330 * 30.27571 * 26 25 24 49 49 H 1.08998 * 109.46888 * 150.27989 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1910 1.5505 1.1815 6 1 5.0710 0.9481 1.3522 7 6 3.7540 2.4350 2.1600 8 7 2.9284 3.4077 1.8451 9 14 4.3401 2.2413 3.9231 10 1 5.8197 2.3585 3.9686 11 1 3.7338 3.3032 4.7656 12 1 3.9329 0.9087 4.4365 13 6 4.1784 1.3362 -1.1633 14 8 5.3913 1.3357 -1.1637 15 6 3.4244 1.2169 -2.4625 16 6 4.4182 1.1105 -3.6211 17 6 3.6527 0.9900 -4.9403 18 8 4.5808 0.8901 -6.0222 19 6 4.0609 0.7763 -7.2726 20 6 2.6855 0.7606 -7.4545 21 6 2.1595 0.6442 -8.7264 22 6 3.0025 0.5430 -9.8179 23 6 2.4259 0.4156 -11.2044 24 6 4.3733 0.5587 -9.6393 25 6 4.9044 0.6806 -8.3696 26 6 6.3987 0.7035 -8.1762 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 2.6236 4.0254 2.5281 35 1 2.7974 2.0977 -2.6010 36 1 2.7981 0.3251 -2.4386 37 1 5.0449 0.2296 -3.4824 38 1 5.0448 2.0021 -3.6452 39 1 3.0257 0.0987 -4.9164 40 1 3.0262 1.8713 -5.0786 41 1 2.0266 0.8393 -6.6023 42 1 1.0889 0.6324 -8.8685 43 1 2.2877 1.4083 -11.6330 44 1 3.1087 -0.1587 -11.8305 45 1 1.4642 -0.0949 -11.1525 46 1 5.0295 0.4799 -10.4934 47 1 6.7628 -0.3145 -8.0376 48 1 6.8721 1.1421 -9.0546 49 1 6.6421 1.2994 -7.2966 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159444446.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:58 Heat of formation + Delta-G solvation = -90.893651 kcal Electronic energy + Delta-G solvation = -26321.514355 eV Core-core repulsion = 22633.341712 eV Total energy + Delta-G solvation = -3688.172643 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.24803 -40.51531 -38.75761 -37.16255 -35.09764 -34.43276 -33.77792 -32.96340 -32.41677 -29.03191 -28.10072 -27.42840 -26.78355 -26.00792 -23.89561 -22.47186 -22.07370 -21.60078 -20.52205 -18.94744 -18.74720 -17.82878 -17.40853 -17.08188 -16.73053 -16.10473 -16.04395 -15.79294 -15.36510 -15.27135 -14.97413 -14.74360 -14.38125 -14.15507 -14.05873 -13.98923 -13.82627 -13.41471 -13.33818 -13.19543 -13.08195 -12.96462 -12.74630 -12.70356 -12.60134 -12.41148 -12.24079 -12.17554 -12.09711 -12.00399 -11.96438 -11.60307 -11.53507 -11.40284 -10.86957 -10.35884 -9.74145 -9.38020 -8.89319 -8.34097 -6.10549 0.39249 0.48297 1.38394 1.39384 1.49482 2.06473 2.15447 2.32412 2.78067 3.00454 3.13776 3.77677 3.87787 3.90143 3.92619 4.06317 4.10933 4.16791 4.23695 4.32489 4.39717 4.41113 4.45358 4.46648 4.61450 4.62857 4.69362 4.71678 4.79527 4.81732 4.84961 4.91529 5.00165 5.03246 5.07570 5.16597 5.18014 5.25500 5.31913 5.35828 5.42145 5.42265 5.47178 5.53130 5.61026 5.70891 5.94798 6.24127 6.50425 6.56520 7.19535 7.48099 8.09071 8.69265 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.021736 B = 0.002326 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.848695 B =12035.021450 C =12954.490170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.133 4.133 3 C 0.110 3.890 4 N -0.456 5.456 5 C -0.342 4.342 6 H 0.058 0.942 7 C 0.004 3.996 8 N -0.890 5.890 9 Si 0.979 3.021 10 H -0.279 1.279 11 H -0.271 1.271 12 H -0.263 1.263 13 C 0.445 3.555 14 O -0.632 6.632 15 C -0.116 4.116 16 C -0.090 4.090 17 C 0.070 3.930 18 O -0.332 6.332 19 C 0.099 3.901 20 C -0.211 4.211 21 C -0.093 4.093 22 C -0.130 4.130 23 C -0.106 4.106 24 C -0.090 4.090 25 C -0.135 4.135 26 C -0.104 4.104 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.042 0.958 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.273 0.727 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.140 0.860 42 H 0.145 0.855 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.147 0.853 47 H 0.069 0.931 48 H 0.082 0.918 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.182 -6.106 -21.571 23.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.172 4.172 3 C -0.014 4.014 4 N -0.175 5.175 5 C -0.471 4.471 6 H 0.076 0.924 7 C -0.199 4.199 8 N -0.528 5.528 9 Si 0.803 3.197 10 H -0.205 1.205 11 H -0.196 1.196 12 H -0.188 1.188 13 C 0.235 3.765 14 O -0.519 6.519 15 C -0.155 4.155 16 C -0.128 4.128 17 C -0.005 4.005 18 O -0.246 6.246 19 C 0.054 3.946 20 C -0.229 4.229 21 C -0.111 4.111 22 C -0.130 4.130 23 C -0.162 4.162 24 C -0.108 4.108 25 C -0.136 4.136 26 C -0.161 4.161 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.120 0.880 36 H 0.128 0.872 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.158 0.842 42 H 0.163 0.837 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.165 0.835 47 H 0.088 0.912 48 H 0.101 0.899 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.520 -5.927 -21.379 23.425 hybrid contribution 0.475 0.262 1.482 1.578 sum -7.045 -5.665 -19.897 21.855 Atomic orbital electron populations 1.21634 0.93243 1.02397 1.02254 1.21899 0.97428 0.96529 1.01313 1.21644 0.79975 0.96623 1.03108 1.43753 1.06033 1.63186 1.04503 1.19274 1.12314 1.22351 0.93139 0.92410 1.26133 0.97012 0.92840 1.03872 1.69975 1.33933 1.13590 1.35279 0.85228 0.78296 0.78603 0.77622 1.20491 1.19563 1.18759 1.21342 0.87959 0.80482 0.86669 1.90484 1.16654 1.56818 1.87927 1.21426 0.98471 1.05146 0.90492 1.21041 0.97818 1.02709 0.91255 1.22808 0.91329 1.02645 0.83724 1.86029 1.37131 1.88109 1.13358 1.19179 0.92705 0.98274 0.84458 1.21499 0.93430 1.08120 0.99881 1.21132 1.00767 0.98111 0.91078 1.20193 0.93341 1.02375 0.97100 1.20752 1.01435 1.02767 0.91289 1.21031 0.95274 0.98867 0.95580 1.19588 0.96542 1.05861 0.91587 1.20601 0.90428 1.02382 1.02639 0.91248 0.91227 0.93331 0.91834 0.93905 0.90416 0.91385 0.91761 0.88028 0.87209 0.92264 0.92878 0.90076 0.90534 0.84221 0.83727 0.90670 0.90757 0.90752 0.83503 0.91226 0.89882 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 9.91 71.98 0.71 -2.73 16 2 C -0.13 -4.45 6.17 30.59 0.19 -4.27 16 3 C 0.11 4.57 4.69 86.38 0.41 4.98 16 4 N -0.46 -23.41 2.50 -635.53 -1.59 -25.00 16 5 C -0.34 -19.71 8.84 84.04 0.74 -18.96 16 6 H 0.06 3.57 7.82 -2.91 -0.02 3.54 16 7 C 0.00 0.22 4.95 84.93 0.42 0.64 16 8 N -0.89 -48.48 11.61 21.66 0.25 -48.22 16 9 Si 0.98 42.99 29.59 68.60 2.03 45.02 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 12 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 13 C 0.45 22.15 7.59 87.66 0.67 22.81 16 14 O -0.63 -37.27 15.89 -3.07 -0.05 -37.32 16 15 C -0.12 -4.00 4.31 29.85 0.13 -3.87 16 16 C -0.09 -3.02 4.87 30.60 0.15 -2.87 16 17 C 0.07 1.79 4.74 71.98 0.34 2.13 16 18 O -0.33 -9.77 9.18 -92.40 -0.85 -10.62 16 19 C 0.10 2.57 6.66 22.50 0.15 2.72 16 20 C -0.21 -4.56 9.04 22.37 0.20 -4.36 16 21 C -0.09 -1.67 9.69 22.25 0.22 -1.46 16 22 C -0.13 -2.21 5.88 -19.85 -0.12 -2.32 16 23 C -0.11 -1.11 10.01 71.23 0.71 -0.40 16 24 C -0.09 -1.67 9.35 22.26 0.21 -1.46 16 25 C -0.14 -3.16 5.89 -19.77 -0.12 -3.28 16 26 C -0.10 -2.21 9.79 71.24 0.70 -1.51 16 27 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 28 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.06 1.94 6.60 -2.39 -0.02 1.93 16 31 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.08 3.67 5.76 -2.39 -0.01 3.65 16 33 H 0.07 2.50 6.66 -2.39 -0.02 2.49 16 34 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 35 H 0.10 3.14 7.41 -2.39 -0.02 3.12 16 36 H 0.11 3.13 6.54 -2.39 -0.02 3.12 16 37 H 0.06 2.18 8.10 -2.39 -0.02 2.16 16 38 H 0.05 2.02 8.10 -2.38 -0.02 2.00 16 39 H 0.08 1.74 7.66 -2.39 -0.02 1.72 16 40 H 0.08 1.72 7.66 -2.38 -0.02 1.70 16 41 H 0.14 2.57 6.30 -2.91 -0.02 2.55 16 42 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 43 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 44 H 0.07 0.63 8.08 -2.38 -0.02 0.62 16 45 H 0.07 0.64 8.08 -2.39 -0.02 0.62 16 46 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 47 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.08 1.36 8.09 -2.39 -0.02 1.34 16 49 H 0.05 1.33 7.53 -2.39 -0.02 1.31 16 Total: -1.00 -72.86 396.15 6.42 -66.44 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 0.92 Total: 23.90 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: 5.71 Total: -14.21 kcal Atomic # 7 Polarization: -71.88 SS G_CDS: -1.34 Total: -73.22 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: -0.90 Total: -47.93 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -72.86 6.42 -66.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159444446.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.449 kcal (2) G-P(sol) polarization free energy of solvation -72.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds