Wall clock time and date at job start Tue Mar 31 2020 12:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47207 * 2 1 4 4 N 1.46499 * 109.46996 * 180.02562 * 3 2 1 5 5 C 1.37100 * 119.99838 * 265.55798 * 4 3 2 6 6 H 1.08005 * 120.00156 * 145.67238 * 5 4 3 7 7 C 1.38954 * 119.99720 * 325.67056 * 5 4 3 8 8 N 1.31407 * 120.00175 * 338.40883 * 7 5 4 9 9 Si 1.86804 * 119.99555 * 158.41135 * 7 5 4 10 10 H 1.48499 * 109.47237 * 90.00085 * 9 7 5 11 11 H 1.48503 * 109.46721 * 209.99699 * 9 7 5 12 12 H 1.48495 * 109.47193 * 329.99854 * 9 7 5 13 13 C 1.34778 * 120.00464 * 85.56014 * 4 3 2 14 14 O 1.21289 * 119.99750 * 359.97438 * 13 4 3 15 15 C 1.50697 * 120.00314 * 180.02562 * 13 4 3 16 16 C 1.52995 * 109.47427 * 179.97438 * 15 13 4 17 17 H 1.08997 * 109.47146 * 305.00022 * 16 15 13 18 18 C 1.53004 * 109.46765 * 64.99766 * 16 15 13 19 19 C 1.53001 * 109.46797 * 185.00153 * 18 16 15 20 20 C 1.50698 * 109.47431 * 184.99557 * 16 15 13 21 21 C 1.38261 * 119.94341 * 299.73350 * 20 16 15 22 22 C 1.38159 * 120.05245 * 179.72338 * 21 20 16 23 23 C 1.38731 * 119.94035 * 0.54454 * 22 21 20 24 24 O 1.35902 * 120.05116 * 179.74700 * 23 22 21 25 25 C 1.42902 * 117.00091 * 359.97438 * 24 23 22 26 26 C 1.38730 * 119.89238 * 359.72490 * 23 22 21 27 27 C 1.38149 * 119.94442 * 0.02562 * 26 23 22 28 28 H 1.08993 * 109.47294 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46966 * 300.00568 * 1 2 3 30 30 H 1.09008 * 109.46920 * 60.00187 * 1 2 3 31 31 H 1.08999 * 109.46966 * 239.99432 * 2 1 3 32 32 H 1.09002 * 109.46599 * 120.00124 * 2 1 3 33 33 H 1.08999 * 109.47622 * 59.99833 * 3 2 1 34 34 H 1.09008 * 109.47028 * 299.99747 * 3 2 1 35 35 H 0.96996 * 119.99892 * 179.97438 * 8 7 5 36 36 H 1.09005 * 109.47431 * 59.99449 * 15 13 4 37 37 H 1.09004 * 109.46976 * 300.00048 * 15 13 4 38 38 H 1.09000 * 109.46901 * 65.00465 * 18 16 15 39 39 H 1.09000 * 109.47172 * 305.00317 * 18 16 15 40 40 H 1.09004 * 109.46891 * 180.02562 * 19 18 16 41 41 H 1.09007 * 109.47058 * 299.99825 * 19 18 16 42 42 H 1.08991 * 109.47084 * 60.00149 * 19 18 16 43 43 H 1.07994 * 119.98050 * 359.97438 * 21 20 16 44 44 H 1.07997 * 120.02535 * 180.26522 * 22 21 20 45 45 H 1.09000 * 109.46912 * 299.99442 * 25 24 23 46 46 H 1.08993 * 109.47273 * 59.99723 * 25 24 23 47 47 H 1.08998 * 109.46606 * 179.97438 * 25 24 23 48 48 H 1.08000 * 120.02798 * 179.97438 * 26 23 22 49 49 H 1.07995 * 119.97347 * 180.02562 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1910 1.5341 1.1829 6 1 5.1300 1.0145 1.3045 7 6 3.6781 2.2957 2.2259 8 7 2.8033 3.2445 1.9783 9 14 4.2324 1.9707 3.9799 10 1 5.4223 2.8049 4.2857 11 1 3.1333 2.3136 4.9178 12 1 4.5821 0.5354 4.1306 13 6 4.1785 1.3522 -1.1646 14 8 3.5717 1.2706 -2.2116 15 6 5.6855 1.3515 -1.1651 16 6 6.1950 1.2396 -2.6034 17 1 5.7598 0.3587 -3.0754 18 6 5.7904 2.4902 -3.3865 19 6 6.1899 2.3243 -4.8541 20 6 7.6968 1.1154 -2.5962 21 6 8.4699 2.1230 -2.0496 22 6 9.8467 2.0089 -2.0366 23 6 10.4538 0.8874 -2.5828 24 8 11.8081 0.7753 -2.5758 25 6 12.5452 1.8504 -1.9901 26 6 9.6760 -0.1196 -3.1356 27 6 8.2994 -0.0031 -3.1415 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 2.4451 3.7758 2.7064 36 1 6.0487 0.5037 -0.5843 37 1 6.0493 2.2784 -0.7215 38 1 6.2965 3.3603 -2.9683 39 1 4.7115 2.6291 -3.3171 40 1 5.9021 3.2155 -5.4119 41 1 7.2689 2.1854 -4.9234 42 1 5.6839 1.4543 -5.2723 43 1 7.9971 2.9980 -1.6288 44 1 10.4500 2.7942 -1.6057 45 1 12.3306 2.7736 -2.5283 46 1 12.2553 1.9630 -0.9455 47 1 13.6119 1.6343 -2.0496 48 1 10.1463 -0.9934 -3.5618 49 1 7.6935 -0.7869 -3.5714 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160237852.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:17 Heat of formation + Delta-G solvation = -69.166591 kcal Electronic energy + Delta-G solvation = -27426.025950 eV Core-core repulsion = 23738.795463 eV Total energy + Delta-G solvation = -3687.230487 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.18429 -38.90644 -37.74652 -35.46706 -34.28533 -32.79739 -31.33168 -30.96577 -30.25413 -29.06319 -27.26947 -25.87184 -24.78534 -23.34974 -22.82105 -21.83650 -20.74556 -19.64908 -18.91513 -18.13228 -16.87849 -16.23279 -15.88598 -15.77533 -15.06509 -14.68385 -14.48311 -14.27377 -14.22018 -13.85834 -13.69632 -13.60118 -13.40528 -13.03711 -12.76860 -12.57751 -12.42645 -12.04220 -11.94725 -11.61727 -11.56369 -11.33481 -11.19506 -11.09841 -10.98410 -10.92430 -10.85966 -10.63948 -10.41611 -10.30922 -10.17490 -10.10027 -9.96989 -9.69760 -9.07338 -8.86678 -8.30926 -7.90533 -7.48922 -6.37866 -4.04559 1.47436 1.57279 3.09048 3.19841 3.23931 3.25110 3.89369 3.94733 4.11220 4.74885 4.82944 4.95398 4.98023 5.01436 5.04518 5.24348 5.31133 5.35483 5.53602 5.58244 5.65765 5.71042 5.77641 5.81281 5.85457 5.98749 6.07156 6.09788 6.17348 6.23080 6.36180 6.40552 6.48751 6.49243 6.54058 6.56330 6.58005 6.65889 6.73260 6.73711 6.85415 6.87683 6.99836 7.06407 7.17636 7.37773 7.42778 7.52269 7.95645 8.39092 9.08650 9.56414 9.99507 10.62905 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.012623 B = 0.003667 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.724883 B = 7634.468866 C = 9052.457330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.114 3.886 4 N -0.439 5.439 5 C -0.337 4.337 6 H 0.089 0.911 7 C 0.044 3.956 8 N -0.858 5.858 9 Si 0.909 3.091 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.269 1.269 13 C 0.469 3.531 14 O -0.604 6.604 15 C -0.111 4.111 16 C -0.028 4.028 17 H 0.079 0.921 18 C -0.119 4.119 19 C -0.144 4.144 20 C -0.093 4.093 21 C -0.073 4.073 22 C -0.205 4.205 23 C 0.110 3.890 24 O -0.323 6.323 25 C 0.029 3.971 26 C -0.151 4.151 27 C -0.080 4.080 28 H 0.044 0.956 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.106 0.894 34 H 0.050 0.950 35 H 0.269 0.731 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.050 0.950 39 H 0.091 0.909 40 H 0.045 0.955 41 H 0.046 0.954 42 H 0.051 0.949 43 H 0.126 0.874 44 H 0.124 0.876 45 H 0.053 0.947 46 H 0.054 0.946 47 H 0.096 0.904 48 H 0.125 0.875 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.351 -2.217 -5.684 12.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C -0.010 4.010 4 N -0.157 5.157 5 C -0.465 4.465 6 H 0.107 0.893 7 C -0.162 4.162 8 N -0.495 5.495 9 Si 0.736 3.264 10 H -0.203 1.203 11 H -0.207 1.207 12 H -0.194 1.194 13 C 0.258 3.742 14 O -0.491 6.491 15 C -0.150 4.150 16 C -0.047 4.047 17 H 0.098 0.902 18 C -0.156 4.156 19 C -0.202 4.202 20 C -0.094 4.094 21 C -0.091 4.091 22 C -0.223 4.223 23 C 0.066 3.934 24 O -0.237 6.237 25 C -0.067 4.067 26 C -0.170 4.170 27 C -0.098 4.098 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.124 0.876 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.069 0.931 39 H 0.109 0.891 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.144 0.856 44 H 0.142 0.858 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.114 0.886 48 H 0.143 0.857 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.045 -2.248 -6.126 12.829 hybrid contribution 0.370 0.200 1.322 1.388 sum 11.415 -2.048 -4.804 12.553 Atomic orbital electron populations 1.21655 0.96696 1.00353 1.01345 1.21828 0.94614 0.99609 1.01185 1.21440 0.81656 0.94393 1.03512 1.43504 1.04724 1.62569 1.04884 1.19414 1.07552 1.29439 0.90132 0.89339 1.25296 0.97017 0.93632 1.00262 1.69928 1.30068 1.16660 1.32816 0.86223 0.78441 0.79157 0.82616 1.20294 1.20716 1.19353 1.20376 0.89396 0.80750 0.83646 1.90480 1.70460 1.56530 1.31593 1.21414 0.94478 1.03471 0.95683 1.19927 0.88799 0.99999 0.95952 0.90233 1.21686 1.03678 0.96067 0.94144 1.21723 1.00500 1.00958 0.96982 1.19969 0.96202 0.94287 0.98908 1.20872 0.92417 0.98636 0.97183 1.21192 0.96041 0.98702 1.06404 1.18984 0.82156 0.94930 0.97344 1.86031 1.15849 1.44712 1.77061 1.23000 0.96149 0.89639 0.97865 1.20348 0.93045 0.98933 1.04661 1.20912 0.93243 0.97460 0.98194 0.93712 0.93054 0.93165 0.92945 0.92512 0.87589 0.93122 0.92085 0.90564 0.89730 0.93076 0.89063 0.93585 0.93488 0.93009 0.85602 0.85848 0.92809 0.92697 0.88593 0.85675 0.85507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.91 37.16 0.37 -2.07 16 2 C -0.13 -2.76 6.23 -26.73 -0.17 -2.93 16 3 C 0.11 2.71 4.92 -4.04 -0.02 2.69 16 4 N -0.44 -10.87 2.55 -114.81 -0.29 -11.16 16 5 C -0.34 -8.39 8.70 -14.93 -0.13 -8.52 16 6 H 0.09 2.12 6.98 -52.48 -0.37 1.75 16 7 C 0.04 1.08 4.94 -17.47 -0.09 0.99 16 8 N -0.86 -22.27 11.31 55.50 0.63 -21.64 16 9 Si 0.91 19.16 29.60 -169.99 -5.03 14.13 16 10 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 11 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 12 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 13 C 0.47 11.03 7.29 -10.99 -0.08 10.94 16 14 O -0.60 -15.08 13.64 5.55 0.08 -15.00 16 15 C -0.11 -2.16 3.58 -27.89 -0.10 -2.26 16 16 C -0.03 -0.47 1.68 -91.77 -0.15 -0.63 16 17 H 0.08 1.41 7.68 -51.93 -0.40 1.01 16 18 C -0.12 -2.00 5.08 -26.73 -0.14 -2.14 16 19 C -0.14 -2.10 9.73 37.16 0.36 -1.74 16 20 C -0.09 -1.39 3.76 -104.60 -0.39 -1.78 16 21 C -0.07 -1.04 8.70 -39.60 -0.34 -1.38 16 22 C -0.20 -2.66 9.04 -39.43 -0.36 -3.02 16 23 C 0.11 1.47 6.69 -39.22 -0.26 1.21 16 24 O -0.32 -3.96 10.50 -19.43 -0.20 -4.16 16 25 C 0.03 0.24 9.81 101.05 0.99 1.23 16 26 C -0.15 -1.99 9.99 -39.43 -0.39 -2.38 16 27 C -0.08 -1.09 9.66 -39.60 -0.38 -1.47 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 31 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.11 2.68 5.34 -51.93 -0.28 2.40 16 34 H 0.05 1.26 7.56 -51.92 -0.39 0.86 16 35 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 36 H 0.08 1.46 7.65 -51.93 -0.40 1.06 16 37 H 0.08 1.67 7.53 -51.93 -0.39 1.27 16 38 H 0.05 0.83 7.20 -51.93 -0.37 0.45 16 39 H 0.09 1.84 5.88 -51.93 -0.31 1.53 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.65 7.38 -51.93 -0.38 0.27 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.13 1.75 7.12 -52.49 -0.37 1.38 16 44 H 0.12 1.33 6.30 -52.49 -0.33 1.00 16 45 H 0.05 0.40 7.66 -51.93 -0.40 0.01 16 46 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 47 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 49 H 0.13 1.54 7.94 -52.49 -0.42 1.13 16 LS Contribution 390.02 15.07 5.88 5.88 Total: -1.00 -28.37 390.02 -8.38 -36.74 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -8.14 Total: 8.47 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -1.28 Total: -13.25 kcal Atomic # 7 Polarization: -33.14 SS G_CDS: 0.33 Total: -32.80 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.13 Total: -19.17 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -28.37 -8.38 -36.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160237852.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.425 kcal (2) G-P(sol) polarization free energy of solvation -28.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds